Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 8.3e-105 383.6 185 100.0
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 6.9e-43 177.9 167 51.5
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 2.0e-42 176.4 156 53.8
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 2.6e-42 176.0 156 53.2
Actinidia09441 Actinidia chinensis HOM05D002733 ORTHO05D003856 7.7e-42 174.5 158 56.3
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.0e-41 174.1 156 53.2
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 5.0e-41 171.8 156 52.6
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 8.5e-41 171.0 159 52.8
Actinidia20408 Actinidia chinensis HOM05D002733 ORTHO05D003856 2.5e-40 169.5 154 53.9
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 1.2e-39 167.2 144 54.9
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 6.1e-39 164.9 143 51.7
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 2.3e-38 162.9 149 50.3
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 3.9e-38 162.2 149 50.3
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 3.9e-38 162.2 141 51.1
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 6.7e-38 161.4 165 48.5
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 7.4e-37 157.9 147 49.7
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 2.8e-36 156.0 144 50.0
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 4.8e-36 155.2 133 51.9
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 4.8e-36 155.2 141 50.4
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 6.3e-36 154.8 144 50.0
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 6.3e-36 154.8 136 53.7
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 1.1e-35 154.1 139 52.5
COL.COLO4_34789 Corchorus olitorius HOM05D002733 ORTHO05D003856 1.4e-35 153.7 138 52.2
Thecc.09G104200 Theobroma cacao HOM05D002733 ORTHO05D003856 1.4e-35 153.7 138 50.7
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 2.4e-35 152.9 139 52.5
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 2.4e-35 152.9 136 52.9
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 2.0e-34 149.8 141 49.6
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 2.6e-34 149.4 138 50.0
MD00G1107900 Malus domestica HOM05D002733 ORTHO05D003856 1.0e-33 147.5 144 49.3
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 8.5e-33 144.4 164 47.0
CiPaw.03G014800 Carya illinoinensis HOM05D002733 ORTHO05D003856 2.5e-32 142.9 137 48.9
MD02G1059300 Malus domestica HOM05D002733 ORTHO05D003856 2.5e-32 142.9 138 48.6
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 5.5e-32 141.7 136 48.5
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.1e-31 139.8 147 46.3
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 2.7e-31 139.4 136 47.8
Prupe.7G224000 Prunus persica HOM05D002733 ORTHO05D003856 3.6e-31 139.0 142 46.5
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 4.7e-31 138.7 168 45.8
Gohir.A06G065650 Gossypium hirsutum HOM05D002733 ORTHO05D003856 7.9e-31 137.9 136 47.1
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 1.4e-30 137.1 181 39.8
MD15G1316300 Malus domestica HOM05D002733 ORTHO05D003856 1.8e-30 136.7 142 47.2
QL02p042807 Quercus lobata HOM05D002733 ORTHO05D003856 1.8e-30 136.7 145 44.1
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 2.3e-30 136.3 150 46.0
QL02p042555 Quercus lobata HOM05D002733 ORTHO05D003856 3.0e-30 136.0 145 44.1
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 1.1e-29 134.0 140 45.7
CsaV3_3G004840 Cucumis sativus L. HOM05D002733 ORTHO05D003856 3.3e-29 132.5 124 46.8
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 4.4e-29 132.1 140 45.7
MELO3C004101.2 Cucumis melo HOM05D002733 ORTHO05D003856 7.4e-29 131.3 126 46.0
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 9.7e-29 131.0 158 42.4
Sed0022151 Sechium edule HOM05D002733 ORTHO05D003856 9.7e-29 131.0 129 46.5
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 2.2e-28 129.8 136 46.3
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 4.8e-28 128.6 162 38.3
TPR.G1412 Trifolium pratense HOM05D002733 ORTHO05D003856 1.6e-26 123.6 131 43.5
Cfa016244 Carpinus fangiana HOM05D002733 ORTHO05D003856 5.9e-26 121.7 122 46.7
Ciclev10010395m.g Citrus clementina HOM05D002733 ORTHO05D003856 5.0e-25 118.6 130 47.7
Sed0027145 Sechium edule HOM05D002733 ORTHO05D003856 6.5e-25 118.2 122 43.4
Peaxi162Scf00665g00139 Petunia axillaris HOM05D002733 ORTHO05D003856 8.5e-25 117.9 155 43.9
CiPaw.03G015100 Carya illinoinensis HOM05D002733 ORTHO05D003856 3.2e-24 115.9 105 49.5
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 4.2e-24 115.5 128 44.5
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 5.5e-24 115.2 113 45.1
Cfa016245 Carpinus fangiana HOM05D002733 ORTHO05D003856 2.1e-23 113.2 124 45.2
Haze_00185 Corylus avellana HOM05D002733 ORTHO05D003856 2.1e-23 113.2 117 48.7
Haze_00196 Corylus avellana HOM05D002733 ORTHO05D003856 2.7e-23 112.8 133 43.6
QL01p018928 Quercus lobata HOM05D002733 ORTHO05D003856 1.8e-22 110.2 136 42.6
Eucgr.L02178 Eucalyptus grandis HOM05D002733 ORTHO05D003856 6.7e-22 108.2 124 40.3
Peaxi162Scf00665g00148 Petunia axillaris HOM05D002733 ORTHO05D003856 6.7e-22 108.2 137 43.8
TPR.G1395 Trifolium pratense HOM05D002733 ORTHO05D003856 6.7e-22 108.2 133 40.6
TPR.G1447 Trifolium pratense HOM05D002733 ORTHO05D003856 6.7e-22 108.2 125 43.2
Solyc12g007300.1 Solanum lycopersicum HOM05D002733 ORTHO05D003856 1.2e-21 107.5 128 45.3
Sopen12g003260 Solanum pennellii HOM05D002733 ORTHO05D003856 1.2e-21 107.5 128 45.3
PGSC0003DMG400000368 Solanum tuberosum HOM05D002733 ORTHO05D003856 1.2e-21 107.5 128 45.3
Ciclev10007038m.g Citrus clementina HOM05D002733 ORTHO05D003856 1.5e-21 107.1 131 42.0
MD02G1060300 Malus domestica HOM05D002733 ORTHO05D003856 2.6e-21 106.3 120 41.7
Medtr3g013820 Medicago truncatula HOM05D002733 ORTHO05D003856 3.3e-21 105.9 133 39.1
QL01p018935 Quercus lobata HOM05D002733 ORTHO05D003856 3.3e-21 105.9 148 39.2
TPR.G8024 Trifolium pratense HOM05D002733 ORTHO05D003856 5.7e-21 105.1 136 39.0
Medtr3g013810 Medicago truncatula HOM05D002733 ORTHO05D003856 9.7e-21 104.4 133 38.3
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 1.3e-20 104.0 128 43.0
Medtr0267s0030 Medicago truncatula HOM05D002733 ORTHO05D003856 1.3e-20 104.0 133 37.6
Medtr3g013920 Medicago truncatula HOM05D002733 ORTHO05D003856 1.3e-20 104.0 133 38.3
Haze_00197 Corylus avellana HOM05D002733 ORTHO05D003856 1.7e-20 103.6 116 44.8
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 2.2e-20 103.2 129 45.0
Medtr3g013900 Medicago truncatula HOM05D002733 ORTHO05D003856 2.8e-20 102.8 133 37.6
AT4G03160 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 3.7e-20 102.4 117 39.3
DCAR_028226 Daucus carota HOM05D002733 ORTHO05D003856 3.7e-20 102.4 127 41.7
Lj1g0000886 Lotus japonicus HOM05D002733 ORTHO05D003856 4.8e-20 102.1 123 38.2
Sed0017653 Sechium edule HOM05D002733 ORTHO05D003856 4.8e-20 102.1 121 39.7
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 6.3e-20 101.7 153 36.6
DCAR_003268 Daucus carota HOM05D002733 ORTHO05D003856 1.1e-19 100.9 139 36.7
Peaxi162Scf00665g00126 Petunia axillaris HOM05D002733 ORTHO05D003856 1.1e-19 100.9 111 47.7
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.1e-19 100.9 139 38.1
BcaB02g09048 Brassica carinata HOM05D002733 ORTHO05D003856 1.4e-19 100.5 160 36.2
TPR.G12039 Trifolium pratense HOM05D002733 ORTHO05D003856 1.4e-19 100.5 136 38.2
VMungo1080G0686 Vigna mungo HOM05D002733 ORTHO05D003856 1.4e-19 100.5 109 43.1
VMungo1080G0152 Vigna mungo HOM05D002733 ORTHO05D003856 3.1e-19 99.4 104 45.2
Prupe.7G224100 Prunus persica HOM05D002733 ORTHO05D003856 1.2e-18 97.4 172 33.7
AL4G37790 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 1.6e-18 97.1 137 37.2
A04p30010 Brassica napus HOM05D002733 ORTHO05D003856 3.5e-18 95.9 124 38.7
BraA04t18506Z Brassica rapa HOM05D002733 ORTHO05D003856 3.5e-18 95.9 124 38.7
COL.COLO4_32232 Corchorus olitorius HOM05D002733 ORTHO05D003856 4.5e-18 95.5 129 41.1
QL01p018939 Quercus lobata HOM05D002733 ORTHO05D003856 7.7e-18 94.7 151 38.4
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 7.7e-18 94.7 113 41.6
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.3e-17 94.0 112 42.0
THA.LOC104810048 Tarenaya hassleriana HOM05D002733 ORTHO05D003856 1.7e-17 93.6 148 35.1
BcaC02g07356 Brassica carinata HOM05D002733 ORTHO05D003856 2.2e-17 93.2 123 38.2
BcaC02g12127 Brassica carinata HOM05D002733 ORTHO05D003856 2.9e-17 92.8 178 33.7
Dinv41650 Davidia involucrata HOM05D002733 ORTHO05D003856 2.9e-17 92.8 108 50.0
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 3.8e-17 92.4 112 40.2
A05p06330 Brassica napus HOM05D002733 ORTHO05D003856 3.8e-17 92.4 178 33.7
C04p07280 Brassica napus HOM05D002733 ORTHO05D003856 3.8e-17 92.4 178 33.7
BolC4t22351H Brassica oleracea HOM05D002733 ORTHO05D003856 3.8e-17 92.4 178 33.7
Glyma.04G133200 Glycine max HOM05D002733 ORTHO05D003856 3.8e-17 92.4 122 38.5
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 5.0e-17 92.0 132 34.1
DCAR_014131 Daucus carota HOM05D002733 ORTHO05D003856 5.0e-17 92.0 121 39.7
BcaB06g29131 Brassica carinata HOM05D002733 ORTHO05D003856 6.5e-17 91.7 111 41.4
BolC4t28286H Brassica oleracea HOM05D002733 ORTHO05D003856 8.5e-17 91.3 123 37.4
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 1.5e-16 90.5 132 34.1
BraA05t19601Z Brassica rapa HOM05D002733 ORTHO05D003856 1.5e-16 90.5 178 34.8
Dinv07992 Davidia involucrata HOM05D002733 ORTHO05D003856 1.5e-16 90.5 107 48.6
AL7G49890 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 3.2e-16 89.4 112 38.4
BcaC01g05431 Brassica carinata HOM05D002733 ORTHO05D003856 3.2e-16 89.4 147 35.4
C03p26740 Brassica napus HOM05D002733 ORTHO05D003856 3.2e-16 89.4 147 35.4
BolC3t15059H Brassica oleracea HOM05D002733 ORTHO05D003856 3.2e-16 89.4 147 35.4
Carub.0003s2754 Capsella rubella HOM05D002733 ORTHO05D003856 4.2e-16 89.0 114 38.6
Aa31LG7G1520 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.5e-16 88.6 138 38.4
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 7.2e-16 88.2 132 34.1
Carub.0004s2232 Capsella rubella HOM05D002733 ORTHO05D003856 1.2e-15 87.4 119 37.0
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 1.6e-15 87.0 132 34.1
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 2.1e-15 86.7 112 39.3
CARHR135120 Cardamine hirsuta HOM05D002733 ORTHO05D003856 2.1e-15 86.7 173 28.9
PGSC0003DMG400000371 Solanum tuberosum HOM05D002733 ORTHO05D003856 2.7e-15 86.3 182 30.2
Aa31LG7G1600 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.1e-15 85.1 146 34.2
Aa31LG8G17220 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.1e-15 85.1 134 35.8
Thhalv10017517m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 1.0e-14 84.3 174 32.2
Aa31LG8G17170 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.8e-14 83.6 114 42.1
Phvul.005G028900 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 2.3e-14 83.2 103 38.8
Aqoxy1G01499 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 3.0e-14 82.8 139 31.7
Aqoxy2G03580 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 4.0e-14 82.4 120 40.0
FAN19G0693 Fragaria x ananassa HOM05D002733 ORTHO05D003856 5.2e-14 82.0 64 57.8
Sabra08G0161200 Salix brachista HOM05D002733 ORTHO05D003856 6.8e-14 81.6 100 45.0
Aa31LG8G11380 Aethionema arabicum HOM05D002733 ORTHO05D003856 8.8e-14 81.3 122 36.9
Aa31LG3G6410 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.2e-13 80.9 127 37.8
Thhalv10003384m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 3.4e-13 79.3 122 35.2
Aa31LG7G1530 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.4e-13 79.0 130 33.8
Aa31LG8G17140 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.7e-13 78.6 127 37.0
Aa31LG8G17210 Aethionema arabicum HOM05D002733 ORTHO05D003856 9.8e-13 77.8 132 34.8
BcaC01g05470 Brassica carinata HOM05D002733 ORTHO05D003856 1.3e-12 77.4 121 33.1
Dinv26718 Davidia involucrata HOM05D002733 ORTHO05D003856 2.8e-12 76.3 94 48.9
Sp4g22040 Schrenkiella parvula HOM05D010480 ORTHO05D003856 6.3e-12 75.1 142 33.8
Aa31LG8G17150 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.4e-11 73.2 104 39.4
Aa31LG8G17160 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.4e-11 73.2 153 31.4
Nitab4.5_0005564g0030 Nicotiana tabacum HOM05D002733 ORTHO05D003856 2.4e-11 73.2 109 36.7
ATR1159G057 Amborella trichopoda HOM05D020218 ORTHO05D013427 4.1e-11 72.4 109 32.1
Aa31LG8G17190 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.4e-11 72.0 144 31.9
TPR.G22027 Trifolium pratense HOM05D002733 ORTHO05D003856 9.1e-11 71.2 93 36.6
BcaC02g12109 Brassica carinata HOM05D010480 ORTHO05D003856 1.6e-10 70.5 144 31.9
C04p07770 Brassica napus HOM05D010480 ORTHO05D003856 1.6e-10 70.5 146 31.5
BolC4t22394H Brassica oleracea HOM05D010480 ORTHO05D003856 1.6e-10 70.5 144 31.9
PSO782G1409 Papaver somniferum HOM05D002733 ORTHO05D003856 1.6e-10 70.5 107 34.6
BcaC02g12110 Brassica carinata HOM05D010480 ORTHO05D003856 1.3e-09 67.4 143 32.9
C04p07760 Brassica napus HOM05D010480 ORTHO05D003856 1.3e-09 67.4 143 32.9
BolC4t22393H Brassica oleracea HOM05D010480 ORTHO05D003856 1.3e-09 67.4 143 32.9
A05p06630 Brassica napus HOM05D010480 ORTHO05D003856 1.7e-09 67.0 143 31.5
BolC4t22395H Brassica oleracea HOM05D010480 ORTHO05D003856 1.7e-09 67.0 145 31.7
BraA05t19630Z Brassica rapa HOM05D010480 ORTHO05D003856 1.7e-09 67.0 143 31.5
A05p06650 Brassica napus HOM05D010480 ORTHO05D003856 6.5e-09 65.1 142 30.3
BraA05t19631Z Brassica rapa HOM05D010480 ORTHO05D003856 6.5e-09 65.1 142 30.3
CDE02G0413 Ceratophyllum demersum HOM05D040791 ORTHO05D013425 1.1e-08 64.3 112 30.4
BcaB02g09089 Brassica carinata HOM05D010480 ORTHO05D003856 1.5e-08 63.9 143 32.2
BraA05t19632Z Brassica rapa HOM05D010480 ORTHO05D003856 1.5e-08 63.9 148 31.1
ATR0594G191 Amborella trichopoda HOM05D020218 ORTHO05D013427 3.2e-08 62.8 109 32.1
BolC3t19780H Brassica oleracea HOM05D010480 ORTHO05D003856 4.2e-08 62.4 127 32.3
Prupe.7G162100 Prunus persica HOM05D002733 ORTHO05D003856 4.2e-08 62.4 90 38.9
BcaC02g12108 Brassica carinata HOM05D010480 ORTHO05D003856 5.5e-08 62.0 147 31.3
C04p07780 Brassica napus HOM05D010480 ORTHO05D003856 5.5e-08 62.0 147 31.3
MBI18_g14086_MAGBIO Magnolia biondii HOM05D018115 ORTHO05D017274 5.5e-08 62.0 127 30.7
A05p06660 Brassica napus HOM05D010480 ORTHO05D003856 9.5e-08 61.2 145 30.3
FAN28G2808 Fragaria x ananassa HOM05D002733 ORTHO05D003856 9.5e-08 61.2 65 46.2
Phvul.004G169500 Phaseolus vulgaris HOM05D022012 ORTHO05D003856 9.5e-08 61.2 122 35.2
VMungo0464G0934 Vigna mungo HOM05D022012 ORTHO05D003856 9.5e-08 61.2 108 37.0
MBI15_g37630_MAGBIO Magnolia biondii HOM05D018115 ORTHO05D017274 2.1e-07 60.1 112 31.2
Phvul.004G169400 Phaseolus vulgaris HOM05D022012 ORTHO05D003856 2.8e-07 59.7 94 35.1
Aa31LG7G1580 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.7e-07 58.9 76 46.1
Phvul.004G029250 Phaseolus vulgaris HOM05D022012 ORTHO05D003856 4.7e-07 58.9 88 36.4
CARHR135110 Cardamine hirsuta HOM05D002733 ORTHO05D003856 6.1e-07 58.5 99 34.3
SGA_v2.0_scaffold342G49412 Striga asiatica HOM05D018190 ORTHO05D011718 1.8e-06 57.0 98 32.7


User provided reference genes

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