Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001288 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 5.3e-31 137.1 73 100.0
CSS0049934 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 5.9e-30 133.7 73 98.6
Actinidia27284 Actinidia chinensis HOM05D000567 ORTHO05D000767 7.5e-25 116.7 73 84.9
Dinv18742 Davidia involucrata HOM05D006482 ORTHO05D008149 1.5e-20 102.4 67 77.6
Nitab4.5_0002720g0020 Nicotiana tabacum HOM05D006482 ORTHO05D008149 2.8e-19 98.2 71 69.0
Nitab4.5_0008141g0050 Nicotiana tabacum HOM05D006482 ORTHO05D008149 3.6e-19 97.8 72 69.4
GSVIVG01038627001 Vitis vinifera HOM05D006482 ORTHO05D008149 3.6e-19 97.8 73 71.2
CSS0017170 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 6.1e-19 97.1 73 69.9
Rhsim03G0214200 Rhododendron simsii HOM05D006482 ORTHO05D008149 1.0e-18 96.3 73 68.5
vmacro06428 Vaccinium macrocarpon HOM05D006482 ORTHO05D008149 1.8e-18 95.5 73 65.8
TAR374G1512 Trochodendron aralioides HOM05D006482 ORTHO05D008149 2.3e-18 95.1 73 69.9
TAR629G1047 Trochodendron aralioides HOM05D006482 ORTHO05D008149 3.0e-18 94.7 73 71.2
Nn3g18841 Nelumbo nucifera HOM05D006482 ORTHO05D008149 4.0e-18 94.4 73 69.9
Oeu010737.1 Olea europaea HOM05D006482 ORTHO05D008149 5.2e-18 94.0 73 67.1
Hma1.2p1_0456F.1_g156710 Hydrangea macrophylla HOM05D006482 ORTHO05D008149 8.9e-18 93.2 73 67.1
PGR142G0199 Punica granatum HOM05D006482 ORTHO05D008149 1.2e-17 92.8 73 67.1
PGSC0003DMG400012236 Solanum tuberosum HOM05D006482 ORTHO05D008149 1.5e-17 92.4 73 67.1
Sopen08g031390 Solanum pennellii HOM05D006482 ORTHO05D008149 3.4e-17 91.3 73 65.8
Solyc08g083200.3 Solanum lycopersicum HOM05D006482 ORTHO05D008149 4.4e-17 90.9 73 65.8
Dinv29224 Davidia involucrata HOM05D006482 ORTHO05D008149 5.7e-17 90.5 65 69.2
Lj1g0026941 Lotus japonicus HOM05D006482 ORTHO05D008149 5.7e-17 90.5 73 67.1
Prupe.2G317400 Prunus persica HOM05D006482 ORTHO05D008149 7.5e-17 90.1 73 64.4
Glyma.04G230700 Glycine max HOM05D006482 ORTHO05D008149 9.8e-17 89.7 73 63.0
EL10Ac3g05199 Beta vulgaris HOM05D006482 ORTHO05D008149 1.7e-16 89.0 73 67.1
ECA233G2670 Erigeron canadensis HOM05D006482 ORTHO05D008149 1.7e-16 89.0 73 67.1
QL05p036199 Quercus lobata HOM05D006482 ORTHO05D008149 1.7e-16 89.0 72 65.3
RcHm_v2.0_Chr1g0382671 Rosa chinensis HOM05D006482 ORTHO05D008149 1.7e-16 89.0 73 64.4
Peaxi162Scf00074g00224 Petunia axillaris HOM05D006482 ORTHO05D008149 2.2e-16 88.6 73 65.8
CANSAT21G0227 Cannabis sativa HOM05D006482 ORTHO05D008149 2.8e-16 88.2 73 63.0
Lsat_1_v5_gn_6_10060 Lactuca sativa HOM05D006482 ORTHO05D008149 2.8e-16 88.2 73 65.8
MD01G1227400 Malus domestica HOM05D006482 ORTHO05D008149 2.8e-16 88.2 73 64.4
Manes.01G041500 Manihot esculenta HOM05D006482 ORTHO05D008149 2.8e-16 88.2 73 64.4
Phvul.009G047100 Phaseolus vulgaris HOM05D006482 ORTHO05D008149 2.8e-16 88.2 73 65.8
Psat5g073480 Pisum sativum HOM05D006482 ORTHO05D008149 2.8e-16 88.2 73 64.4
Atru.chr12.2369 Acer truncatum HOM05D006482 ORTHO05D008149 3.7e-16 87.8 73 67.1
PSO063G1999 Papaver somniferum HOM05D006482 ORTHO05D008149 3.7e-16 87.8 73 63.0
FvH4_7g32700 Fragaria vesca HOM05D006482 ORTHO05D008149 6.3e-16 87.0 73 61.6
FAN01G3112 Fragaria x ananassa HOM05D006482 ORTHO05D008149 6.3e-16 87.0 73 61.6
FAN03G2872 Fragaria x ananassa HOM05D006482 ORTHO05D008149 6.3e-16 87.0 73 61.6
Migut.E00300 Erythranthe guttata HOM05D006482 ORTHO05D008149 8.3e-16 86.7 74 66.2
Lalb_Chr11g0067291 Lupinus albus HOM05D006482 ORTHO05D008149 1.1e-15 86.3 72 62.5
arahy.Tifrunner.gnm1.ann1.ZIU4UI Arachis hypogaea HOM05D006482 ORTHO05D008149 1.4e-15 85.9 73 61.6
Ciclev10023193m.g Citrus clementina HOM05D006482 ORTHO05D008149 1.4e-15 85.9 73 63.0
Eucgr.K00422 Eucalyptus grandis HOM05D006482 ORTHO05D008149 1.4e-15 85.9 73 63.0
CDE09G1364 Ceratophyllum demersum HOM05D001294 ORTHO05D001178 1.8e-15 85.5 71 62.0
unitig_699.g19497 Utricularia gibba HOM05D006482 ORTHO05D008149 1.8e-15 85.5 70 61.4
arahy.Tifrunner.gnm1.ann1.CVH3M3 Arachis hypogaea HOM05D006482 ORTHO05D008149 2.4e-15 85.1 73 61.6
HanXRQChr07g0192381 Helianthus annuus HOM05D006482 ORTHO05D008149 2.4e-15 85.1 73 65.8
Ah.13g070630 Amaranthus hybridus HOM05D006482 ORTHO05D008149 3.2e-15 84.7 74 66.2
SalBow3G2365 Salvia bowleyana HOM05D006482 ORTHO05D008149 3.2e-15 84.7 74 64.9
TWI39G0373 Tripterygium wilfordii HOM05D006482 ORTHO05D008149 3.2e-15 84.7 73 61.6
Hund21041 Selenicereus undatus HOM05D006482 ORTHO05D008149 5.4e-15 84.0 67 68.7
Sed0025475 Sechium edule HOM05D006482 ORTHO05D008149 7.0e-15 83.6 73 57.5
Medtr3g092270 Medicago truncatula HOM05D006482 ORTHO05D008149 1.6e-14 82.4 66 65.2
Thecc.03G206900 Theobroma cacao HOM05D006482 ORTHO05D008149 1.6e-14 82.4 73 61.6
COL.COLO4_14353 Corchorus olitorius HOM05D006482 ORTHO05D008149 2.7e-14 81.6 73 60.3
Glyma.04G154600 Glycine max HOM05D006482 ORTHO05D008149 2.7e-14 81.6 69 62.3
Potri.012G022900 Populus trichocarpa HOM05D006482 ORTHO05D008149 3.5e-14 81.3 73 61.6
TWI14G0741 Tripterygium wilfordii HOM05D006482 ORTHO05D008149 3.5e-14 81.3 66 63.6
Cc08_g16820 Coffea canephora HOM05D006482 ORTHO05D008149 4.6e-14 80.9 70 60.0
TPR.G14847 Trifolium pratense HOM05D006482 ORTHO05D008149 4.6e-14 80.9 65 63.1
Gohir.A08G103900 Gossypium hirsutum HOM05D006482 ORTHO05D008149 5.9e-14 80.5 73 60.3
Potri.015G006500 Populus trichocarpa HOM05D006482 ORTHO05D008149 5.9e-14 80.5 73 60.3
CiPaw.05G203100 Carya illinoinensis HOM05D006482 ORTHO05D008149 7.8e-14 80.1 73 60.3
AL8G28600 Arabidopsis lyrata HOM05D006482 ORTHO05D008149 1.0e-13 79.7 73 61.6
CsaV3_5G000030 Cucumis sativus L. HOM05D006482 ORTHO05D008149 1.3e-13 79.3 73 57.5
Carub.0008s1398 Capsella rubella HOM05D006482 ORTHO05D008149 1.7e-13 79.0 73 61.6
Duzib205G0332 Durio zibethinus HOM05D006482 ORTHO05D008149 1.7e-13 79.0 73 57.5
Gohir.D08G115300 Gossypium hirsutum HOM05D006482 ORTHO05D008149 1.7e-13 79.0 73 58.9
Gorai.004G124200 Gossypium raimondii HOM05D006482 ORTHO05D008149 1.7e-13 79.0 73 58.9
Hund09702 Selenicereus undatus HOM05D006482 ORTHO05D008149 1.7e-13 79.0 73 60.3
MELO3C005924.2 Cucumis melo HOM05D006482 ORTHO05D008149 2.3e-13 78.6 73 56.2
Sabra15G0004500 Salix brachista HOM05D006482 ORTHO05D008149 2.3e-13 78.6 73 58.9
AT5G53650 Arabidopsis thaliana HOM05D006482 ORTHO05D008149 2.9e-13 78.2 73 61.6
ClCG01G000130 Citrullus lanatus HOM05D006482 ORTHO05D008149 3.9e-13 77.8 73 53.4
Thhalv10015198m.g Eutrema salsugineum HOM05D006482 ORTHO05D008149 3.9e-13 77.8 73 60.3
Lalb_Chr23g0271851 Lupinus albus HOM05D006482 ORTHO05D008149 3.9e-13 77.8 73 58.9
Sp6g15770 Schrenkiella parvula HOM05D006482 ORTHO05D008149 3.9e-13 77.8 73 60.3
Aa31LG3G9780 Aethionema arabicum HOM05D006482 ORTHO05D008149 6.6e-13 77.0 73 58.9
A03p15030 Brassica napus HOM05D006482 ORTHO05D008149 6.6e-13 77.0 71 60.6
C03p17520 Brassica napus HOM05D006482 ORTHO05D008149 6.6e-13 77.0 71 60.6
BolC3t14165H Brassica oleracea HOM05D006482 ORTHO05D008149 6.6e-13 77.0 71 60.6
BraA03t10797Z Brassica rapa HOM05D006482 ORTHO05D008149 6.6e-13 77.0 71 60.6
CARHR266810 Cardamine hirsuta HOM05D006482 ORTHO05D008149 8.6e-13 76.6 73 60.3
BcaC01g06263 Brassica carinata HOM05D006482 ORTHO05D008149 1.1e-12 76.3 71 60.6
A02p10930 Brassica napus HOM05D006482 ORTHO05D008149 1.5e-12 75.9 71 59.2
BcaB01g04252 Brassica carinata HOM05D006482 ORTHO05D008149 1.9e-12 75.5 71 59.2
Sc19g0000660 Simmondsia chinensis HOM05D006482 ORTHO05D008149 1.9e-12 75.5 67 64.2
BraA02t06158Z Brassica rapa HOM05D006482 ORTHO05D008149 2.5e-12 75.1 71 59.2
Glyma.06G134500 Glycine max HOM05D006482 ORTHO05D008149 2.5e-12 75.1 73 56.2
Gorai.008G265700 Gossypium raimondii HOM05D006482 ORTHO05D008149 2.5e-12 75.1 73 56.2
Sc13g0010170 Simmondsia chinensis HOM05D006482 ORTHO05D008149 3.3e-12 74.7 73 56.2
BcaB05g22064 Brassica carinata HOM05D006482 ORTHO05D008149 4.3e-12 74.3 71 59.2
MD07G1297700 Malus domestica HOM05D006482 ORTHO05D008149 5.6e-12 73.9 99 47.5
BcaC03g14399 Brassica carinata HOM05D006482 ORTHO05D008149 9.5e-12 73.2 71 57.7
C02p18140 Brassica napus HOM05D006482 ORTHO05D008149 9.5e-12 73.2 71 57.7
BolC2t07944H Brassica oleracea HOM05D006482 ORTHO05D008149 9.5e-12 73.2 71 57.7
THA.LOC109117152 Tarenaya hassleriana HOM05D006482 ORTHO05D008149 1.6e-11 72.4 69 56.5
Sed0001965 Sechium edule HOM05D006482 ORTHO05D008149 2.1e-11 72.0 69 53.6
Duzib068G1219 Durio zibethinus HOM05D006482 ORTHO05D008149 3.6e-11 71.2 88 48.9
SEGI_31465 Sequoiadendron giganteum HOM05D006482 ORTHO05D008149 3.6e-11 71.2 61 60.7
AUR62035606 Chenopodium quinoa HOM05D006482 ORTHO05D008149 6.1e-11 70.5 96 49.0
Gohir.A12G246900 Gossypium hirsutum HOM05D006482 ORTHO05D008149 6.1e-11 70.5 73 52.1
Rhsim07G0077300 Rhododendron simsii HOM05D006482 ORTHO05D008149 1.0e-10 69.7 42 78.6
CiPaw.06G042200 Carya illinoinensis HOM05D006482 ORTHO05D008149 2.3e-10 68.6 73 49.3
vmacro13845 Vaccinium macrocarpon HOM05D006482 ORTHO05D008149 4.0e-10 67.8 45 73.3
CDE11G0870 Ceratophyllum demersum HOM05D006482 ORTHO05D008149 5.2e-10 67.4 105 41.0
Eucgr.E02459 Eucalyptus grandis HOM05D006482 ORTHO05D008149 2.2e-08 62.0 70 51.4
Duzib084G1447 Durio zibethinus HOM05D006482 ORTHO05D008149 3.7e-08 61.2 63 52.4
CSS0007382 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 6.4e-08 60.5 72 52.8
Os05g0535700 Oryza sativa ssp. japonica HOM05D006482 ORTHO05D008149 8.3e-08 60.1 70 48.6
CSS0015195 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 2.4e-07 58.5 58 56.9
AUR62006020 Chenopodium quinoa HOM05D006482 ORTHO05D008149 2.4e-07 58.5 42 69.0
DCAR_006554 Daucus carota HOM05D006482 ORTHO05D008149 2.4e-07 58.5 39 71.8
Gohir.D12G247600 Gossypium hirsutum HOM05D006482 ORTHO05D008149 3.2e-07 58.2 73 49.3
HPP92_020659 Vanilla planifolia HOM05D001695 ORTHO05D002735 3.2e-07 58.2 67 49.3
FAN17G0467 Fragaria x ananassa HOM05D006482 ORTHO05D008149 4.1e-07 57.8 41 65.9
QL09p007382 Quercus lobata HOM05D006482 ORTHO05D008149 4.1e-07 57.8 142 33.1
ATR0579G147 Amborella trichopoda HOM05D006482 ORTHO05D008149 9.2e-07 56.6 42 64.3
CSS0018303 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 1.6e-06 55.8 62 48.4
Sabra12G0010900 Salix brachista HOM05D006482 ORTHO05D008149 4.6e-06 54.3 132 34.1
Haze_00279 Corylus avellana HOM05D006482 ORTHO05D008149 6.0e-06 53.9 41 61.0


User provided reference genes

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