Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001283 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 2.6e-31 137.9 61 100.0
CSS0000944 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 7.4e-26 119.8 72 79.2
CSS0016713 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 1.5e-15 85.5 59 74.6
Rhsim08G0086100 Rhododendron simsii HOM05D002996 ORTHO05D003536 6.1e-12 73.6 57 63.2
vmacro18050 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 2.3e-11 71.6 59 61.0
Nitab4.5_0003360g0070 Nicotiana tabacum HOM05D002996 ORTHO05D003536 3.0e-11 71.2 56 62.5
Nitab4.5_0004399g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 3.0e-11 71.2 56 62.5
Peaxi162Scf00003g00013 Petunia axillaris HOM05D002996 ORTHO05D003536 3.0e-11 71.2 56 62.5
Nitab4.5_0000465g0030 Nicotiana tabacum HOM05D002996 ORTHO05D003536 3.9e-11 70.9 70 52.9
Sopen03g007520 Solanum pennellii HOM05D002996 ORTHO05D003536 5.1e-11 70.5 56 58.9
CAN.G625.86 Capsicum annuum HOM05D002996 ORTHO05D003536 6.7e-11 70.1 56 62.5
Solyc02g091410.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 6.7e-11 70.1 56 62.5
Lsat_1_v5_gn_4_154680 Lactuca sativa HOM05D002996 ORTHO05D003536 8.8e-11 69.7 56 58.9
Cfa007838 Carpinus fangiana HOM05D002996 ORTHO05D003536 1.1e-10 69.3 53 64.2
Haze_14227 Corylus avellana HOM05D002996 ORTHO05D003536 1.1e-10 69.3 53 64.2
Nitab4.5_0002366g0050 Nicotiana tabacum HOM05D002996 ORTHO05D003536 1.1e-10 69.3 56 58.9
SGA_v2.0_scaffold13G06389 Striga asiatica HOM05D002996 ORTHO05D003536 1.1e-10 69.3 53 64.2
Oeu000903.1 Olea europaea HOM05D002996 ORTHO05D003536 1.5e-10 68.9 59 59.3
vmacro05509 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 1.5e-10 68.9 66 51.5
Oeu047419.3 Olea europaea HOM05D002996 ORTHO05D003536 2.0e-10 68.6 58 58.6
PGSC0003DMG401030647 Solanum tuberosum HOM05D002996 ORTHO05D003536 2.0e-10 68.6 56 60.7
GSVIVG01030858001 Vitis vinifera HOM05D002996 ORTHO05D003536 2.0e-10 68.6 59 59.3
Cc07_g08150 Coffea canephora HOM05D002996 ORTHO05D003536 2.6e-10 68.2 54 61.1
MD17G1256700 Malus domestica HOM05D002996 ORTHO05D003536 2.6e-10 68.2 54 59.3
Peaxi162Scf00118g00223 Petunia axillaris HOM05D002996 ORTHO05D003536 2.6e-10 68.2 57 57.9
Sopen02g036030 Solanum pennellii HOM05D002996 ORTHO05D003536 2.6e-10 68.2 56 60.7
Dinv19013 Davidia involucrata HOM05D002996 ORTHO05D000378 3.3e-10 67.8 54 61.1
Nn4g24147 Nelumbo nucifera HOM05D002996 ORTHO05D003536 3.3e-10 67.8 58 58.6
Solyc03g043660.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 3.3e-10 67.8 56 57.1
CAN.G473.24 Capsicum annuum HOM05D002996 ORTHO05D003536 4.4e-10 67.4 56 57.1
Prupe.3G159400 Prunus persica HOM05D002996 ORTHO05D003536 7.4e-10 66.6 54 59.3
QL11p004079 Quercus lobata HOM05D002996 ORTHO05D003536 9.7e-10 66.2 53 58.5
TAR622G0566 Trochodendron aralioides HOM05D002996 ORTHO05D003536 9.7e-10 66.2 58 55.2
MSTRG.15319 Avicennia marina HOM05D002996 ORTHO05D003536 1.3e-09 65.9 54 61.1
Cpa.g.sc604.6 Carica papaya HOM05D002996 ORTHO05D003536 1.7e-09 65.5 54 57.4
CDE10G0501 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 1.7e-09 65.5 54 57.4
FvH4_5g27890 Fragaria vesca HOM05D002996 ORTHO05D003536 1.7e-09 65.5 54 55.6
FAN04G0036 Fragaria x ananassa HOM05D002996 ORTHO05D003536 1.7e-09 65.5 54 55.6
FAN18G1791 Fragaria x ananassa HOM05D002996 ORTHO05D003536 1.7e-09 65.5 54 55.6
Thecc.04G120500 Theobroma cacao HOM05D002996 ORTHO05D003536 1.7e-09 65.5 54 57.4
Lsat_1_v5_gn_2_81521 Lactuca sativa HOM05D002996 ORTHO05D003536 2.2e-09 65.1 53 60.4
Ciclev10010941m.g Citrus clementina HOM05D002996 ORTHO05D003536 2.8e-09 64.7 59 54.2
HPP92_003793 Vanilla planifolia HOM05D002996 ORTHO05D003536 2.8e-09 64.7 53 58.5
ATR0053G010 Amborella trichopoda HOM05D002996 ORTHO05D003536 3.7e-09 64.3 58 53.4
COL.COLO4_15722 Corchorus olitorius HOM05D002996 ORTHO05D003536 3.7e-09 64.3 53 58.5
Manes.02G074800 Manihot esculenta HOM05D002996 ORTHO05D003536 3.7e-09 64.3 70 51.4
Gohir.A11G162100 Gossypium hirsutum HOM05D002996 ORTHO05D003536 4.8e-09 63.9 54 55.6
Gohir.D11G168300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 4.8e-09 63.9 54 55.6
Gorai.007G179800 Gossypium raimondii HOM05D002996 ORTHO05D003536 4.8e-09 63.9 54 55.6
MSTRG.3518 Avicennia marina HOM05D002996 ORTHO05D003536 6.3e-09 63.5 53 56.6
ClCG05G010970 Citrullus lanatus HOM05D002996 ORTHO05D003536 6.3e-09 63.5 54 57.4
Migut.L00466 Erythranthe guttata HOM05D002996 ORTHO05D003536 6.3e-09 63.5 54 57.4
Gohir.A08G052700 Gossypium hirsutum HOM05D002996 ORTHO05D003536 6.3e-09 63.5 54 55.6
Gohir.D08G062300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 6.3e-09 63.5 54 55.6
Gorai.004G064500 Gossypium raimondii HOM05D002996 ORTHO05D003536 6.3e-09 63.5 54 55.6
RcHm_v2.0_Chr7g0220101 Rosa chinensis HOM05D002996 ORTHO05D003536 6.3e-09 63.5 54 53.7
SalBow7G0652 Salvia bowleyana HOM05D002996 ORTHO05D003536 6.3e-09 63.5 58 55.2
Zm00001eb252510 Zea mays HOM05D002996 ORTHO05D003536 6.3e-09 63.5 58 56.9
Atru.chr1.1814 Acer truncatum HOM05D002996 ORTHO05D003536 8.2e-09 63.2 54 57.4
Lj6g0006116 Lotus japonicus HOM05D002996 ORTHO05D003536 8.2e-09 63.2 53 54.7
Rhsim10G0079400 Rhododendron simsii HOM05D002996 ORTHO05D003536 8.2e-09 63.2 57 56.1
Aa31LG5G13900 Aethionema arabicum HOM05D002996 ORTHO05D003536 1.1e-08 62.8 53 54.7
MELO3C020288.2 Cucumis melo HOM05D002996 ORTHO05D003536 1.1e-08 62.8 54 57.4
Migut.H00264 Erythranthe guttata HOM05D002996 ORTHO05D003536 1.1e-08 62.8 59 52.5
HanXRQChr07g0193641 Helianthus annuus HOM05D002996 ORTHO05D003536 1.1e-08 62.8 53 54.7
HanXRQChr09g0262271 Helianthus annuus HOM05D002996 ORTHO05D003536 1.4e-08 62.4 54 53.7
Psat5g122480 Pisum sativum HOM05D002996 ORTHO05D003536 1.4e-08 62.4 54 51.9
Hund16206 Selenicereus undatus HOM05D002996 ORTHO05D003536 1.4e-08 62.4 59 52.5
Eucgr.F02825 Eucalyptus grandis HOM05D002996 ORTHO05D003536 1.8e-08 62.0 53 54.7
Glyma.11G218000 Glycine max HOM05D002996 ORTHO05D003536 1.8e-08 62.0 54 53.7
MBI16_g14303_MAGBIO Magnolia biondii HOM05D002996 ORTHO05D003536 1.8e-08 62.0 53 56.6
Manes.01G115900 Manihot esculenta HOM05D002996 ORTHO05D003536 1.8e-08 62.0 54 55.6
Rhsim10G0079500 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.8e-08 62.0 60 51.7
Sed0026936 Sechium edule HOM05D002996 ORTHO05D003536 1.8e-08 62.0 54 55.6
TPR.G27148 Trifolium pratense HOM05D002996 ORTHO05D003536 1.8e-08 62.0 55 50.9
EL10Ac2g04480 Beta vulgaris HOM05D002996 ORTHO05D003536 2.4e-08 61.6 59 50.8
Carub.0003s0254 Capsella rubella HOM05D002996 ORTHO05D003536 2.4e-08 61.6 53 52.8
Medtr3g067690 Medicago truncatula HOM05D002996 ORTHO05D003536 2.4e-08 61.6 55 50.9
Sc10g0000830 Simmondsia chinensis HOM05D002996 ORTHO05D003536 2.4e-08 61.6 59 49.2
AL3G13060 Arabidopsis lyrata HOM05D002996 ORTHO05D003536 3.1e-08 61.2 53 52.8
AT3G03380 Arabidopsis thaliana HOM05D002996 ORTHO05D003536 3.1e-08 61.2 53 52.8
BcaC05g30278 Brassica carinata HOM05D002996 ORTHO05D003536 3.1e-08 61.2 53 52.8
BcaC09g47743 Brassica carinata HOM05D002996 ORTHO05D003536 3.1e-08 61.2 53 52.8
A05p43840 Brassica napus HOM05D002996 ORTHO05D003536 3.1e-08 61.2 53 52.8
A06p26370 Brassica napus HOM05D002996 ORTHO05D003536 3.1e-08 61.2 53 52.8
BNapus_Darmor_BZH_scaffold_162p00130 Brassica napus HOM05D002996 ORTHO05D003536 3.1e-08 61.2 53 52.8
BNapus_Darmor_BZH_scaffold_78p00120 Brassica napus HOM05D002996 ORTHO05D003536 3.1e-08 61.2 53 52.8
BolC1t05834H Brassica oleracea HOM05D002996 ORTHO05D003536 3.1e-08 61.2 53 52.8
BraA05t23122Z Brassica rapa HOM05D002996 ORTHO05D003536 3.1e-08 61.2 53 52.8
CARHR077410 Cardamine hirsuta HOM05D002996 ORTHO05D003536 3.1e-08 61.2 53 52.8
CiPaw.03G068800 Carya illinoinensis HOM05D002996 ORTHO05D003536 3.1e-08 61.2 53 54.7
Duzib133G0038 Durio zibethinus HOM05D002996 ORTHO05D003536 3.1e-08 61.2 54 51.9
Sp3g02390 Schrenkiella parvula HOM05D002996 ORTHO05D003536 3.1e-08 61.2 53 52.8
vmacro05502 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 3.1e-08 61.2 55 50.9
DCAR_010737 Daucus carota HOM05D002996 ORTHO05D003536 4.1e-08 60.8 59 54.2
Duzib211G0161 Durio zibethinus HOM05D002996 ORTHO05D003536 5.3e-08 60.5 54 53.7
Os02g0712000 Oryza sativa ssp. japonica HOM05D002996 ORTHO05D003536 5.3e-08 60.5 58 51.7
Potri.017G128300 Populus trichocarpa HOM05D002996 ORTHO05D003536 5.3e-08 60.5 57 50.9
Sabra17G0107000 Salix brachista HOM05D002996 ORTHO05D003536 5.3e-08 60.5 57 49.1
PSO017G4487 Papaver somniferum HOM05D002996 ORTHO05D003536 6.9e-08 60.1 57 49.1
PGR004G1736 Punica granatum HOM05D002996 ORTHO05D003536 6.9e-08 60.1 53 52.8
VMungo1383G2581 Vigna mungo HOM05D002996 ORTHO05D003536 6.9e-08 60.1 54 51.9
BcaC05g30533 Brassica carinata HOM05D002996 ORTHO05D003536 9.1e-08 59.7 53 50.9
C05p63430 Brassica napus HOM05D002996 ORTHO05D003536 9.1e-08 59.7 53 50.9
BolC5t35007H Brassica oleracea HOM05D002996 ORTHO05D003536 9.1e-08 59.7 53 50.9
Thhalv10019951m.g Eutrema salsugineum HOM05D002996 ORTHO05D003536 9.1e-08 59.7 53 50.9
Actinidia17657 Actinidia chinensis HOM05D002996 ORTHO05D003536 1.2e-07 59.3 46 60.9
TAR374G0579 Trochodendron aralioides HOM05D002996 ORTHO05D003536 1.2e-07 59.3 58 51.7
Glyma.18G039000 Glycine max HOM05D002996 ORTHO05D003536 1.5e-07 58.9 54 50.0
Phvul.001G231700 Phaseolus vulgaris HOM05D002996 ORTHO05D003536 1.5e-07 58.9 54 50.0
BraA01t04583Z Brassica rapa HOM05D002996 ORTHO05D003536 2.0e-07 58.5 53 50.9
Lalb_Chr15g0084771 Lupinus albus HOM05D002996 ORTHO05D003536 2.6e-07 58.2 54 48.1
arahy.Tifrunner.gnm1.ann1.RDL55E Arachis hypogaea HOM05D002996 ORTHO05D003536 4.5e-07 57.4 53 50.9
Ah.16g101290 Amaranthus hybridus HOM05D002996 ORTHO05D003536 7.7e-07 56.6 54 50.0
PSO478G4946 Papaver somniferum HOM05D002996 ORTHO05D003536 7.7e-07 56.6 57 47.4
SMO361G0084 Selaginella moellendorffii HOM05D002996 ORTHO05D003536 7.7e-07 56.6 53 45.3
Ca_08163_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 1.0e-06 56.2 54 48.1
Medtr3g067695 Medicago truncatula HOM05D002996 ORTHO05D003536 1.0e-06 56.2 54 46.3
AUR62023190 Chenopodium quinoa HOM05D002996 ORTHO05D003536 1.3e-06 55.8 59 47.5
AUR62023237 Chenopodium quinoa HOM05D002996 ORTHO05D003536 1.3e-06 55.8 59 47.5
SEGI_30841 Sequoiadendron giganteum HOM05D002996 ORTHO05D003536 1.3e-06 55.8 53 50.9
PSO339G5742 Papaver somniferum HOM05D002996 ORTHO05D003536 1.7e-06 55.5 53 47.2
TWI77G0049 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 1.7e-06 55.5 70 40.0
CANSAT78G2389 Cannabis sativa HOM05D002996 ORTHO05D003536 3.8e-06 54.3 52 50.0
ECA232G3169 Erigeron canadensis HOM05D002996 ORTHO05D003536 3.8e-06 54.3 53 49.1
Aqoxy3G00131_Aqoxy3G00132 Aquilegia oxysepala HOM05D002996 ORTHO05D003536 5.0e-06 53.9 52 50.0
Pp3c2_7790 Physcomitrium patens HOM05D002996 ORTHO05D003536 5.0e-06 53.9 52 50.0
Manes.01G116000 Manihot esculenta HOM05D002996 ORTHO05D003536 8.5e-06 53.1 69 40.6
Potri.004G088600 Populus trichocarpa HOM05D002996 ORTHO05D003536 8.5e-06 53.1 52 50.0


User provided reference genes

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