Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001240 Camellia sinensis var. sinensis HOM05D000456 ORTHO05D000887 3.5e-49 198.0 99 100.0
CSS0017246 Camellia sinensis var. sinensis HOM05D000456 ORTHO05D000887 1.3e-35 152.9 101 78.2
Dinv44832 Davidia involucrata HOM05D000456 ORTHO05D000887 4.4e-20 101.3 156 43.6
THA.LOC104812608 Tarenaya hassleriana HOM05D000456 ORTHO05D000887 1.7e-19 99.4 99 54.5
BolC3t19732H Brassica oleracea HOM05D000456 ORTHO05D000887 8.3e-19 97.1 94 53.2
CAN.G458.25 Capsicum annuum HOM05D000456 ORTHO05D000887 1.1e-18 96.7 85 61.2
BcaC01g00016 Brassica carinata HOM05D000456 ORTHO05D000887 1.9e-18 95.9 94 52.1
Rhsim06G0074700 Rhododendron simsii HOM05D000456 ORTHO05D000887 1.9e-18 95.9 142 44.4
C03p74830 Brassica napus HOM05D000456 ORTHO05D000887 5.4e-18 94.4 108 49.1
Actinidia10362 Actinidia chinensis HOM05D000456 ORTHO05D000887 7.0e-18 94.0 124 46.8
AL1G41740 Arabidopsis lyrata HOM05D000456 ORTHO05D000887 7.0e-18 94.0 94 53.2
Thhalv10008557m.g Eutrema salsugineum HOM05D000456 ORTHO05D000887 6.0e-17 90.9 86 58.1
PGR031G2280 Punica granatum HOM05D000456 ORTHO05D000887 6.0e-17 90.9 100 50.0
Cpa.g.sc36.205 Carica papaya HOM05D000456 ORTHO05D000887 7.8e-17 90.5 127 47.2
Hund27001 Selenicereus undatus HOM05D000456 ORTHO05D000887 1.0e-16 90.1 85 58.8
AT1G28200 Arabidopsis thaliana HOM05D000456 ORTHO05D000887 1.7e-16 89.4 94 51.1
Cfa013706 Carpinus fangiana HOM05D000456 ORTHO05D000887 1.7e-16 89.4 116 45.7
Sp1g24390 Schrenkiella parvula HOM05D000456 ORTHO05D000887 1.7e-16 89.4 87 56.3
vmacro22334 Vaccinium macrocarpon HOM05D000456 ORTHO05D000887 1.7e-16 89.4 143 42.0
BcaB03g12126 Brassica carinata HOM05D000456 ORTHO05D000887 2.3e-16 89.0 106 50.9
Haze_22350 Corylus avellana HOM05D000456 ORTHO05D000887 3.0e-16 88.6 117 46.2
Hma1.2p1_0125F.1_g059160 Hydrangea macrophylla HOM05D000456 ORTHO05D000887 3.0e-16 88.6 139 41.7
TPR.G26033 Trifolium pratense HOM05D000456 ORTHO05D000887 3.0e-16 88.6 96 52.1
Lj1g0018020 Lotus japonicus HOM05D000456 ORTHO05D000887 3.9e-16 88.2 101 50.5
Sabra02G0080700 Salix brachista HOM05D000456 ORTHO05D000887 5.0e-16 87.8 114 45.6
Glyma.04G093400 Glycine max HOM05D000456 ORTHO05D000887 6.6e-16 87.4 93 52.7
A08p25810 Brassica napus HOM05D000456 ORTHO05D000887 8.6e-16 87.0 92 53.3
Glyma.06G095300 Glycine max HOM05D000456 ORTHO05D000887 8.6e-16 87.0 118 47.5
Carub.0001s2664 Capsella rubella HOM05D000456 ORTHO05D000887 1.1e-15 86.7 90 54.4
Ciclev10002139m.g Citrus clementina HOM05D000456 ORTHO05D000887 1.1e-15 86.7 103 49.5
Medtr3g100750 Medicago truncatula HOM05D000456 ORTHO05D000887 1.1e-15 86.7 114 49.1
TWI56G1096 Tripterygium wilfordii HOM05D000456 ORTHO05D000887 1.1e-15 86.7 134 46.3
arahy.Tifrunner.gnm1.ann1.XV68DF Arachis hypogaea HOM05D000456 ORTHO05D000887 1.9e-15 85.9 109 46.8
Peaxi162Scf00818g00217 Petunia axillaris HOM05D000456 ORTHO05D000887 1.9e-15 85.9 111 48.6
Actinidia29608 Actinidia chinensis HOM05D000456 ORTHO05D000887 2.5e-15 85.5 100 49.0
Psat5g045440 Pisum sativum HOM05D000456 ORTHO05D000887 2.5e-15 85.5 109 48.6
CSS0046992 Camellia sinensis var. sinensis HOM05D000456 ORTHO05D000887 3.3e-15 85.1 117 45.3
BraA08t34536Z Brassica rapa HOM05D000456 ORTHO05D000887 4.3e-15 84.7 92 52.2
CARHR027690 Cardamine hirsuta HOM05D000456 ORTHO05D000887 4.3e-15 84.7 106 50.0
Potri.002G102800 Populus trichocarpa HOM05D000456 ORTHO05D000887 4.3e-15 84.7 144 39.6
Sopen07g010950 Solanum pennellii HOM05D000456 ORTHO05D000887 4.3e-15 84.7 97 49.5
Ah.05g170580 Amaranthus hybridus HOM05D000456 ORTHO05D000887 5.6e-15 84.3 93 52.7
Manes.18G061700 Manihot esculenta HOM05D000456 ORTHO05D000887 5.6e-15 84.3 139 42.4
Migut.N02864 Erythranthe guttata HOM05D000456 ORTHO05D000887 7.3e-15 84.0 106 50.9
arahy.Tifrunner.gnm1.ann1.0B6IYK Arachis hypogaea HOM05D000456 ORTHO05D000887 9.5e-15 83.6 117 44.4
VMungo1309G1361 Vigna mungo HOM05D000456 ORTHO05D000887 9.5e-15 83.6 111 45.9
EL10Ac1g01099 Beta vulgaris HOM05D000456 ORTHO05D000887 1.2e-14 83.2 90 52.2
Eucgr.F02124 Eucalyptus grandis HOM05D000456 ORTHO05D000887 1.2e-14 83.2 95 52.6
Potri.005G159100 Populus trichocarpa HOM05D000456 ORTHO05D000887 1.2e-14 83.2 118 41.5
Lalb_Chr08g0242331 Lupinus albus HOM05D000456 ORTHO05D000887 1.6e-14 82.8 118 44.9
Solyc07g021540.3 Solanum lycopersicum HOM05D000456 ORTHO05D000887 1.6e-14 82.8 97 48.5
Phvul.009G037800 Phaseolus vulgaris HOM05D000456 ORTHO05D000887 2.1e-14 82.4 108 46.3
Nitab4.5_0000054g0010 Nicotiana tabacum HOM05D000456 ORTHO05D000887 4.7e-14 81.3 130 42.3
Gohir.D02G084500 Gossypium hirsutum HOM05D000456 ORTHO05D000887 8.1e-14 80.5 111 44.1
MD08G1192100 Malus domestica HOM05D000456 ORTHO05D000887 1.1e-13 80.1 130 42.3
Gorai.005G095200 Gossypium raimondii HOM05D000456 ORTHO05D000887 1.4e-13 79.7 109 44.0
TWI12G0036 Tripterygium wilfordii HOM05D000456 ORTHO05D000887 1.4e-13 79.7 130 41.5
Atru.chr13.1056 Acer truncatum HOM05D000456 ORTHO05D000887 1.8e-13 79.3 121 43.0
DCAR_019292 Daucus carota HOM05D000456 ORTHO05D000887 2.3e-13 79.0 122 42.6
Dinv42642 Davidia involucrata HOM05D000456 ORTHO05D000887 3.1e-13 78.6 132 41.7
RcHm_v2.0_Chr7g0237641 Rosa chinensis HOM05D000456 ORTHO05D000887 3.1e-13 78.6 144 42.4
Sabra05G0121100 Salix brachista HOM05D000456 ORTHO05D000887 5.2e-13 77.8 118 41.5
MSTRG.24433 Avicennia marina HOM05D000456 ORTHO05D000887 6.8e-13 77.4 117 43.6
Hma1.2p1_0010F.1_g007040 Hydrangea macrophylla HOM05D000456 ORTHO05D000887 6.8e-13 77.4 147 39.5
MD15G1380800 Malus domestica HOM05D000456 ORTHO05D000887 6.8e-13 77.4 135 40.7
Gohir.A02G077200 Gossypium hirsutum HOM05D000456 ORTHO05D000887 8.9e-13 77.0 108 42.6
Sc23g0000550 Simmondsia chinensis HOM05D000456 ORTHO05D000887 1.2e-12 76.6 116 44.8
QL09p016983 Quercus lobata HOM05D000456 ORTHO05D000887 4.4e-12 74.7 121 40.5
TAR376G0600 Trochodendron aralioides HOM05D000456 ORTHO05D000887 4.4e-12 74.7 119 42.9
Oeu044842.1 Olea europaea HOM05D000456 ORTHO05D000887 5.8e-12 74.3 116 41.4
Prupe.1G527000 Prunus persica HOM05D000456 ORTHO05D000887 5.8e-12 74.3 127 40.9
FAN08G1845 Fragaria x ananassa HOM05D000456 ORTHO05D000887 1.3e-11 73.2 148 37.2
Duzib093G0461 Durio zibethinus HOM05D000456 ORTHO05D000887 1.7e-11 72.8 124 37.1
FvH4_5g35910 Fragaria vesca HOM05D000456 ORTHO05D000887 2.2e-11 72.4 149 36.9
FAN18G4036 Fragaria x ananassa HOM05D000456 ORTHO05D000887 2.2e-11 72.4 142 38.0
Aqoxy5G01339 Aquilegia oxysepala HOM05D000456 ORTHO05D000887 2.9e-11 72.0 102 46.1
Lsat_1_v5_gn_1_2361 Lactuca sativa HOM05D000456 ORTHO05D000887 2.9e-11 72.0 150 35.3
Cc10_g15530 Coffea canephora HOM05D000456 ORTHO05D000887 3.7e-11 71.6 117 38.5
MELO3C011063.2 Cucumis melo HOM05D000456 ORTHO05D000887 3.7e-11 71.6 134 38.8
TAR625G1299 Trochodendron aralioides HOM05D000456 ORTHO05D000887 4.9e-11 71.2 154 38.3
FAN13G2284 Fragaria x ananassa HOM05D000456 ORTHO05D000887 6.4e-11 70.9 149 36.2
CANSAT25G0888 Cannabis sativa HOM05D000456 ORTHO05D000887 1.4e-10 69.7 148 35.1
unitig_744.g24108 Utricularia gibba HOM05D000456 ORTHO05D000887 1.4e-10 69.7 106 44.3
CsaV3_2G030050 Cucumis sativus L. HOM05D000456 ORTHO05D000887 1.9e-10 69.3 134 38.1
HanXRQChr02g0047051 Helianthus annuus HOM05D000456 ORTHO05D000887 3.2e-10 68.6 135 37.8
Oeu057290.1 Olea europaea HOM05D000456 ORTHO05D000887 9.2e-10 67.0 122 37.7
TAR628G0183 Trochodendron aralioides HOM05D000456 ORTHO05D000887 1.6e-09 66.2 152 34.2
ECA247G2470 Erigeron canadensis HOM05D000456 ORTHO05D000887 2.1e-09 65.9 120 35.8
Sed0010130 Sechium edule HOM05D000456 ORTHO05D000887 2.1e-09 65.9 141 37.6
MBI06_g18791_MAGBIO Magnolia biondii HOM05D000456 ORTHO05D000887 2.7e-09 65.5 131 34.4
ATR0022G008 Amborella trichopoda HOM05D000456 ORTHO05D000887 3.5e-09 65.1 145 35.9
Thecc.08G067000 Theobroma cacao HOM05D000456 ORTHO05D000887 4.6e-09 64.7 119 37.0
MBI02_g18290_MAGBIO Magnolia biondii HOM05D000456 ORTHO05D000887 6.0e-09 64.3 137 34.3
Hund16875 Selenicereus undatus HOM05D000456 ORTHO05D000887 7.8e-09 63.9 113 40.7
BcaB08g34237 Brassica carinata HOM05D016604 ORTHO05D020006 3.9e-08 61.6 62 56.5
ClCG00G002080 Citrullus lanatus HOM05D000456 ORTHO05D000887 3.9e-08 61.6 135 37.0
ClCG08G011460 Citrullus lanatus HOM05D000456 ORTHO05D000887 3.9e-08 61.6 135 37.0
CiPaw.08G053700 Carya illinoinensis HOM05D000456 ORTHO05D000887 6.6e-08 60.8 127 36.2
Duzib116G0611 Durio zibethinus HOM05D000456 ORTHO05D000887 8.6e-08 60.5 122 36.1
Gohir.D05G224500 Gossypium hirsutum HOM05D000456 ORTHO05D000887 8.6e-08 60.5 113 38.1
Gorai.009G231900 Gossypium raimondii HOM05D000456 ORTHO05D000887 8.6e-08 60.5 113 38.1
TAR381G0793 Trochodendron aralioides HOM05D000456 ORTHO05D000887 1.5e-07 59.7 156 34.0
Lalb_Chr23g0270271 Lupinus albus HOM05D000456 ORTHO05D000887 1.9e-07 59.3 102 41.2
Nn5g29949 Nelumbo nucifera HOM05D000456 ORTHO05D000887 7.3e-07 57.4 160 32.5
PSO541G0356 Papaver somniferum HOM05D000456 ORTHO05D000887 7.3e-07 57.4 137 32.8
COL.COLO4_11956 Corchorus olitorius HOM05D000456 ORTHO05D000887 9.5e-07 57.0 65 47.7
GSVIVG01009127001 Vitis vinifera HOM05D000456 ORTHO05D000887 1.6e-06 56.2 58 53.4
Gohir.A05G221700 Gossypium hirsutum HOM05D000456 ORTHO05D000887 2.8e-06 55.5 125 32.8


User provided reference genes

Program Settings