Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 3.3e-125 451.8 247 100.0
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 4.0e-94 348.6 246 74.8
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 4.4e-93 345.1 241 77.2
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 7.7e-90 334.3 243 74.9
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 1.0e-89 334.0 242 71.5
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 2.5e-88 329.3 242 66.1
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 2.1e-87 326.2 244 68.4
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 2.7e-87 325.9 238 75.6
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 1.4e-86 323.6 238 75.2
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 1.8e-86 323.2 247 72.9
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 1.2e-85 320.5 242 67.4
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 1.5e-85 320.1 239 67.8
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 2.0e-85 319.7 241 67.6
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 7.5e-85 317.8 241 68.5
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 1.3e-84 317.0 236 68.2
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 1.3e-84 317.0 258 67.1
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 1.4e-83 313.5 239 66.5
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 2.4e-83 312.8 247 66.8
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 2.4e-83 312.8 249 63.9
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 3.1e-83 312.4 242 71.9
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 1.2e-82 310.5 244 70.1
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 5.9e-82 308.1 248 64.5
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 2.3e-81 306.2 244 66.0
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 1.5e-80 303.5 244 69.7
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 1.9e-80 303.1 250 66.8
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 2.5e-80 302.8 248 69.8
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 2.5e-80 302.8 244 70.1
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 4.2e-80 302.0 242 68.2
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 5.5e-80 301.6 247 67.6
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 5.5e-80 301.6 247 67.6
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 9.5e-80 300.8 250 68.0
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 9.5e-80 300.8 249 64.3
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 9.5e-80 300.8 245 64.1
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 4.7e-79 298.5 244 66.8
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 4.7e-79 298.5 239 62.8
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 6.1e-79 298.1 245 60.4
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 6.1e-79 298.1 245 64.1
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 6.1e-79 298.1 251 61.0
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 8.0e-79 297.7 259 61.8
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 1.0e-78 297.4 244 63.9
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 2.3e-78 296.2 242 65.7
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 3.0e-78 295.8 244 62.3
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 3.0e-78 295.8 244 62.3
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 4.0e-78 295.4 247 63.2
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 5.2e-78 295.0 257 64.2
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 6.8e-78 294.7 242 65.7
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 6.8e-78 294.7 240 63.8
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 2.0e-77 293.1 247 66.0
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 2.6e-77 292.7 243 65.0
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 5.7e-77 291.6 242 65.3
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 1.3e-76 290.4 242 64.9
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 1.7e-76 290.0 251 65.3
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 1.7e-76 290.0 242 66.5
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 1.7e-76 290.0 249 62.2
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 2.2e-76 289.7 242 60.3
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 2.2e-76 289.7 244 66.4
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 4.9e-76 288.5 242 63.6
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 6.3e-76 288.1 242 63.6
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 6.3e-76 288.1 244 61.5
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 1.1e-75 287.3 256 61.7
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 1.1e-75 287.3 261 64.8
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 1.8e-75 286.6 241 65.1
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 2.4e-75 286.2 247 60.7
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 2.4e-75 286.2 247 61.1
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 3.2e-75 285.8 242 64.0
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 5.4e-75 285.0 242 62.8
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 5.4e-75 285.0 242 64.0
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 9.2e-75 284.3 242 67.4
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 1.2e-74 283.9 242 64.0
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 1.2e-74 283.9 243 63.4
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 1.2e-74 283.9 242 57.4
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 2.0e-74 283.1 242 63.6
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 2.7e-74 282.7 242 63.6
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 2.7e-74 282.7 250 62.8
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 3.5e-74 282.3 243 63.4
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 3.9e-73 278.9 249 59.0
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 2.5e-72 276.2 243 63.0
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 1.6e-71 273.5 256 62.1
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 3.6e-71 272.3 241 61.4
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 9.8e-69 264.2 257 61.1
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 1.3e-68 263.8 237 59.5
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 1.7e-68 263.5 247 61.9
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 1.1e-67 260.8 357 47.1
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 4.6e-66 255.4 231 58.0
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 1.5e-64 250.4 247 55.1
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 3.3e-64 249.2 247 56.7
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 1.6e-63 246.9 244 59.4
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 6.2e-63 245.0 244 58.2
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 8.1e-63 244.6 244 59.8
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 7.5e-61 238.0 269 53.9
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 9.8e-61 237.7 188 71.3
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 2.2e-60 236.5 205 60.0
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 1.9e-59 233.4 245 53.9
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 6.0e-58 228.4 234 60.3
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 6.0e-58 228.4 244 55.3
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 1.7e-57 226.9 235 54.5
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 1.7e-57 226.9 234 59.4
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 6.2e-55 218.4 242 54.5
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 5.2e-54 215.3 233 51.9
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 8.9e-54 214.5 233 52.4
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 1.3e-52 210.7 235 48.5
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 2.7e-50 203.0 248 45.2
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 1.7e-49 200.3 233 48.1
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 8.6e-49 198.0 133 78.9
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 3.6e-47 192.6 235 47.2
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 3.6e-47 192.6 235 47.2
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 6.8e-46 188.3 162 56.2
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 2.6e-45 186.4 248 42.7
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 6.4e-44 181.8 162 54.9
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 6.4e-44 181.8 162 54.9
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 1.7e-41 173.7 171 52.6
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 6.6e-41 171.8 133 68.4
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 9.6e-40 167.9 152 62.5
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 6.2e-39 165.2 241 46.5
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 4.0e-38 162.5 235 40.9
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 2.1e-31 140.2 236 33.9
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 8.1e-31 138.3 131 61.1
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 2.6e-29 133.3 234 41.5
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 3.8e-28 129.4 242 35.1
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 1.1e-27 127.9 258 33.7
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 1.3e-25 120.9 119 56.3
BcaNung07036 Brassica carinata HOM05D005295 ORTHO05D005962 2.8e-23 113.2 88 58.0
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 1.2e-21 107.8 91 60.4
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 3.5e-18 96.3 172 34.3
Hma1.2p1_0387F.1_g141930 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 2.6e-13 80.1 45 73.3
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 1.0e-12 78.2 141 35.5
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 1.0e-12 78.2 117 39.3
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 1.0e-12 78.2 117 39.3
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 5.0e-12 75.9 117 38.5
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 5.0e-12 75.9 117 38.5
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 1.9e-11 73.9 117 37.6
Cc11_g09910 Coffea canephora HOM05D005295 ORTHO05D005962 3.2e-11 73.2 38 89.5
AL3G27610 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 7.2e-11 72.0 125 34.4
AagrBONN_evm.TU.Sc2ySwM_117.1842 Anthoceros agrestis HOM05D005295 ORTHO05D005962 1.3e-09 67.8 168 32.7
Duzib268G1416 Durio zibethinus HOM05D005295 ORTHO05D005962 1.3e-09 67.8 212 28.8
BcaB05g22090 Brassica carinata HOM05D005295 ORTHO05D005962 1.9e-08 63.9 57 54.4
CBR_g39602 Chara braunii HOM05D005295 ORTHO05D005962 1.9e-08 63.9 281 28.5
AL1G49440 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 2.2e-07 60.5 35 80.0
AL4G33490 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 2.2e-07 60.5 35 80.0
AL6G44190 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 2.2e-07 60.5 35 80.0
AL6G51010 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 2.2e-07 60.5 35 80.0
AL7G20040 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 2.2e-07 60.5 35 80.0
BcaB05g22088 Brassica carinata HOM05D005295 ORTHO05D005962 2.8e-07 60.1 102 42.2
AL3G43900 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 6.3e-07 58.9 35 77.1
Carub.0001s2750 Capsella rubella HOM05D005295 ORTHO05D005962 3.1e-06 56.6 35 74.3
HanXRQChr09g0239031 Helianthus annuus HOM05D005295 ORTHO05D005962 5.3e-06 55.8 47 55.3
HanXRQChr11g0352521 Helianthus annuus HOM05D005295 ORTHO05D005962 5.3e-06 55.8 47 55.3


User provided reference genes

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