Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 2534.2 1259 100.0
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 2530.4 1259 99.8
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 2273.0 1258 89.0
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 2209.1 1253 87.5
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 2165.6 1281 84.2
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 2144.0 1259 83.9
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 2124.4 1263 83.1
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 2114.7 1258 82.0
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 2110.9 1259 82.8
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 2106.6 1266 81.6
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 2096.6 1258 81.6
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 2095.9 1259 81.6
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 2090.5 1258 81.3
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 2089.3 1259 81.5
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 2086.2 1258 81.7
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 2082.8 1259 81.2
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 2072.4 1261 81.1
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 2067.0 1259 81.3
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 2066.2 1258 80.6
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 2055.4 1300 78.4
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 2053.5 1266 79.6
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 2046.6 1258 79.0
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 2044.2 1259 80.0
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 2043.9 1258 78.9
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2030.0 1258 79.6
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 2028.8 1261 79.2
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 2027.3 1274 78.8
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 2020.7 1263 79.4
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2019.6 1258 79.2
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 2019.6 1262 78.4
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2019.2 1258 79.2
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 2018.4 1258 79.2
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 2018.4 1262 78.3
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 2016.1 1289 77.2
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 2014.2 1250 80.6
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2014.2 1258 79.0
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 2012.7 1260 79.4
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 2011.9 1270 80.6
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 2011.1 1518 69.2
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 2009.2 1259 79.0
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 2008.0 1263 79.0
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 2006.5 1258 78.0
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 2006.5 1268 78.2
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 2004.2 1258 78.1
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 2001.5 1259 78.8
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 2001.1 1258 77.8
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 2000.7 1259 78.6
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1999.2 1259 77.2
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 1998.8 1259 78.2
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 1998.4 1263 78.9
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1994.5 1264 78.4
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 1994.2 1257 78.6
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1990.7 1261 77.8
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1986.8 1259 77.5
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1984.1 1259 78.3
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1983.4 1259 77.8
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1981.8 1259 77.8
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1981.8 1257 77.3
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1979.9 1261 77.2
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1979.5 1263 76.9
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 1976.8 1243 78.1
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 1974.1 1259 77.4
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1973.7 1261 77.1
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1973.0 1327 74.5
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1966.0 1262 77.1
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1958.7 1260 76.4
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1955.3 1259 76.3
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1954.1 1262 75.8
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 1954.1 1275 76.0
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1952.9 1262 75.8
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1950.3 1263 75.7
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1949.9 1263 75.8
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1949.5 1244 78.2
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1949.1 1262 75.6
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1943.7 1268 75.3
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1939.5 1261 75.2
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1935.2 1285 74.7
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1934.8 1262 75.1
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1932.5 1262 75.4
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1928.3 1257 76.2
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1927.9 1259 75.3
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1927.9 1266 75.2
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1926.8 1262 74.9
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1921.0 1259 76.3
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 1914.8 1324 73.1
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1909.0 1257 75.6
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1907.9 1267 73.9
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1884.0 1241 76.0
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1869.0 1170 79.0
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1824.3 1256 72.9
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 1821.2 1162 77.2
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1773.8 1260 69.5
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1711.8 1094 77.9
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1693.3 1231 68.6
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1687.5 1080 76.3
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1679.5 1052 79.9
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1678.7 1263 66.5
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1662.9 1034 79.2
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1620.9 1007 80.0
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1583.5 1061 73.5
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1582.8 1030 75.7
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1572.8 1100 73.5
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1541.6 924 82.9
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1484.9 1015 72.2
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1444.1 856 82.2
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1336.2 1393 51.5
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 0.0e+00 1268.1 1260 56.1
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 0.0e+00 1224.5 1360 49.6
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 0.0e+00 1181.8 776 75.3
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 0.0e+00 1159.8 746 75.6
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 0.0e+00 1130.5 864 66.3
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 0.0e+00 1078.5 1012 57.3
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 5.0e-294 1015.0 1153 47.7
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 7.7e-287 991.1 592 85.0
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 5.6e-261 905.2 536 81.9
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 1.3e-254 884.0 859 57.0
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 1.9e-216 757.3 453 84.5
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 1.9e-213 747.3 446 82.7
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 1.4e-208 731.1 1446 33.5
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 5.9e-162 576.2 489 59.5
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 3.6e-159 567.0 306 88.9
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 3.0e-121 441.0 316 69.3
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 1.4e-107 395.6 205 92.2
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 4.3e-96 357.5 371 50.9
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 3.1e-94 351.3 316 60.8
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.5e-91 341.7 194 82.0
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 7.0e-86 323.6 256 62.5
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 3.2e-83 314.7 172 87.2
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 4.7e-82 310.8 159 95.0
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 4.4e-80 304.3 250 66.0
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 7.0e-78 297.0 217 70.5
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 1.1e-75 289.7 260 58.5
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 1.1e-75 289.7 260 58.5
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 1.1e-75 289.7 260 58.5
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 1.7e-71 275.8 183 73.2
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.2e-69 269.6 266 52.6
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 2.2e-68 265.4 152 83.6
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 2.9e-68 265.0 153 81.7
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 5.0e-68 264.2 451 35.9
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 2.7e-66 258.5 181 70.7
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.1e-62 246.5 166 73.5
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 2.6e-56 225.3 132 80.3
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 5.0e-52 211.1 152 67.1
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 6.1e-50 204.1 166 64.5
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.7e-47 196.1 136 66.9
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.6e-45 189.5 108 78.7
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.3e-44 186.4 108 78.7
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 1.9e-43 182.6 111 78.4
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 5.6e-43 181.0 108 76.9
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 5.6e-43 181.0 108 76.9
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 2.1e-42 179.1 130 66.9
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.4e-41 176.4 120 74.2
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.8e-41 176.0 108 75.9
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.2e-40 173.3 98 81.6
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 4.1e-38 164.9 102 79.4
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.3e-36 159.8 97 80.4
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 4.0e-33 148.3 81 82.7
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.7e-31 142.9 78 79.5
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 1.2e-29 136.7 124 59.7
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 2.3e-28 132.5 89 74.2
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 1.1e-27 130.2 110 64.5
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 4.7e-26 124.8 65 86.2
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 2.4e-22 112.5 107 47.7
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.5e-19 103.2 62 80.6
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 7.3e-19 100.9 581 24.3
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 9.6e-19 100.5 79 64.6
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 9.0e-17 94.0 52 76.9
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 1.5e-16 93.2 57 75.4
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 8.4e-15 87.4 45 93.3
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 2.4e-14 85.9 81 58.0
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 3.9e-12 78.6 69 53.6
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 5.1e-12 78.2 99 45.5
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 3.1e-09 68.9 373 21.2
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 9.0e-09 67.4 61 55.7
ATR0693G286 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.1e-06 60.5 40 67.5
Prupe.7G186800 Prunus persica HOM05D005976 ORTHO05D007149 2.4e-06 59.3 237 26.2
ATR0693G070 Amborella trichopoda HOM05D004029 ORTHO05D004613 9.3e-06 57.4 46 56.5
SEGI_32398 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 9.3e-06 57.4 78 39.7


User provided reference genes

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