Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.2e-68 263.1 134 100.0
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.1e-66 256.5 131 99.2
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 2.7e-28 129.0 139 57.6
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 4.0e-24 115.2 137 56.9
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 3.4e-23 112.1 140 54.3
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 3.2e-21 105.5 138 49.3
Nitab4.5_0004588g0030 Nicotiana tabacum HOM05D015198 ORTHO05D002992 5.4e-21 104.8 156 42.3
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 3.5e-20 102.1 151 43.7
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 4.6e-20 101.7 138 50.7
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 3.0e-19 99.0 153 43.8
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 2.5e-18 95.9 139 46.0
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 4.3e-18 95.1 147 46.3
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 7.3e-18 94.4 149 45.0
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 7.3e-18 94.4 142 43.0
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 7.3e-18 94.4 132 49.2
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 1.2e-17 93.6 118 47.5
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.6e-17 93.2 140 46.4
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 4.7e-17 91.7 139 41.7
Dinv06180 Davidia involucrata HOM05D002974 ORTHO05D002992 4.7e-17 91.7 109 53.2
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 5.2e-16 88.2 141 44.0
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 8.9e-16 87.4 159 40.9
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 2.6e-15 85.9 141 42.6
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 3.4e-15 85.5 138 42.0
PGSC0003DMG400008372 Solanum tuberosum HOM05D015198 ORTHO05D002992 3.4e-15 85.5 135 44.4
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 4.4e-15 85.1 133 42.1
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 9.9e-15 84.0 142 40.8
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 9.9e-15 84.0 135 41.5
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 1.3e-14 83.6 142 42.3
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 1.7e-14 83.2 148 39.9
Rhsim04G0111200 Rhododendron simsii HOM05D002974 ORTHO05D002992 2.2e-14 82.8 109 47.7
Rhsim04G0112500 Rhododendron simsii HOM05D002974 ORTHO05D002992 2.2e-14 82.8 109 47.7
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 3.7e-14 82.0 132 44.7
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 4.9e-14 81.6 151 37.1
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 4.9e-14 81.6 142 45.1
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 1.1e-13 80.5 132 40.2
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 1.1e-13 80.5 136 42.6
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 1.1e-13 80.5 141 41.8
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.9e-13 79.7 141 41.1
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 3.2e-13 79.0 141 41.1
Solyc10g078440.2 Solanum lycopersicum HOM05D015198 ORTHO05D002992 4.1e-13 78.6 132 42.4
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 7.1e-13 77.8 160 37.5
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 2.7e-12 75.9 133 40.6
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 2.7e-12 75.9 161 39.8
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 3.5e-12 75.5 137 40.1
Peaxi162Scf00003g00491 Petunia axillaris HOM05D015198 ORTHO05D002992 6.0e-12 74.7 131 42.7
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 1.0e-11 73.9 152 37.5
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 1.0e-11 73.9 156 41.0
Medtr7g089860 Medicago truncatula HOM05D002974 ORTHO05D002992 1.3e-11 73.6 150 38.0
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 2.3e-11 72.8 139 41.0
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 2.3e-11 72.8 160 35.0
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 3.9e-11 72.0 146 38.4
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 5.1e-11 71.6 139 37.4
Gohir.D11G322600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 5.1e-11 71.6 141 39.0
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 5.1e-11 71.6 139 39.6
MSTRG.10792 Avicennia marina HOM05D002974 ORTHO05D002992 6.6e-11 71.2 101 41.6
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 1.1e-10 70.5 172 33.7
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 1.1e-10 70.5 134 38.8
SHI49841 Sapria himalayana HOM05D048774 ORTHO05D002992 1.5e-10 70.1 119 40.3
SHI50452 Sapria himalayana HOM05D048774 ORTHO05D002992 1.5e-10 70.1 119 40.3
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 1.5e-10 70.1 130 36.9
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 3.3e-10 68.9 132 37.9
COL.COLO4_04711 Corchorus olitorius HOM05D002974 ORTHO05D002992 4.3e-10 68.6 129 39.5
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 5.6e-10 68.2 151 37.7
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 5.6e-10 68.2 129 37.2
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 7.3e-10 67.8 127 35.4
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 9.6e-10 67.4 129 38.8
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 9.6e-10 67.4 136 36.0
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.2e-09 67.0 54 64.8
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 1.2e-09 67.0 54 64.8
Sabra06G0026200 Salix brachista HOM05D002974 ORTHO05D002992 1.2e-09 67.0 120 40.8
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 2.1e-09 66.2 136 36.0
ClCG10G016220 Citrullus lanatus HOM05D002974 ORTHO05D002992 3.6e-09 65.5 116 38.8
MELO3C009755.2 Cucumis melo HOM05D002974 ORTHO05D002992 6.2e-09 64.7 115 40.0
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 8.1e-09 64.3 56 66.1
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 8.1e-09 64.3 129 34.9
Migut.J01657 Erythranthe guttata HOM05D002974 ORTHO05D002992 1.1e-08 63.9 162 35.2
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 1.4e-08 63.5 130 36.9
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 1.4e-08 63.5 126 34.9
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.4e-08 63.5 126 34.9
Dinv12041 Davidia involucrata HOM05D002974 ORTHO05D002992 1.8e-08 63.2 88 46.6
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 1.8e-08 63.2 129 37.2
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 1.8e-08 63.2 113 40.7
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 1.8e-08 63.2 141 36.9
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 2.4e-08 62.8 131 34.4
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 2.4e-08 62.8 124 37.9
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.1e-08 62.4 129 34.1
Sp5g05850 Schrenkiella parvula HOM05D002974 ORTHO05D002992 3.1e-08 62.4 129 37.2
Dinv05728 Davidia involucrata HOM05D009218 ORTHO05D010069 4.0e-08 62.0 120 34.2
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 4.0e-08 62.0 122 38.5
MSTRG.5073 Avicennia marina HOM05D002974 ORTHO05D002992 5.2e-08 61.6 131 34.4
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 5.2e-08 61.6 129 34.1
Lj3g0024515 Lotus japonicus HOM05D002974 ORTHO05D002992 5.2e-08 61.6 123 33.3
BcaB02g07639 Brassica carinata HOM05D002974 ORTHO05D002992 6.8e-08 61.2 120 40.0
Ciclev10002803m.g Citrus clementina HOM05D002974 ORTHO05D002992 6.8e-08 61.2 138 35.5
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 8.9e-08 60.8 161 33.5
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 8.9e-08 60.8 131 35.9
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 1.2e-07 60.5 46 67.4
EL10Ac2g02772 Beta vulgaris HOM05D012416 ORTHO05D002992 1.5e-07 60.1 128 35.9
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 1.5e-07 60.1 119 42.0
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.5e-07 60.1 129 35.7
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.0e-07 59.7 86 47.7
C08p31950 Brassica napus HOM05D002974 ORTHO05D002992 2.6e-07 59.3 119 40.3
BolC8t50812H Brassica oleracea HOM05D002974 ORTHO05D002992 2.6e-07 59.3 119 40.3
FAN02G0528 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.6e-07 59.3 129 35.7
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 3.4e-07 58.9 122 36.1
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 3.4e-07 58.9 101 42.6
A09p49560 Brassica napus HOM05D002974 ORTHO05D002992 4.4e-07 58.5 124 38.7
BraA09t40409Z Brassica rapa HOM05D002974 ORTHO05D002992 4.4e-07 58.5 124 38.7
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 4.4e-07 58.5 127 34.6
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 4.4e-07 58.5 140 35.0
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.8e-07 58.2 128 35.9
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.8e-07 58.2 128 35.9
Medtr8g040080 Medicago truncatula HOM05D002974 ORTHO05D002992 5.8e-07 58.2 78 42.3
PSO339G5722 Papaver somniferum HOM05D002974 ORTHO05D002992 5.8e-07 58.2 158 33.5
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 5.8e-07 58.2 45 73.3
MSTRG.28034 Avicennia marina HOM05D002974 ORTHO05D002992 7.6e-07 57.8 109 34.9
AUR62032633 Chenopodium quinoa HOM05D012416 ORTHO05D002992 7.6e-07 57.8 138 33.3
Oeu006786.1 Olea europaea HOM05D002974 ORTHO05D002992 7.6e-07 57.8 126 38.1
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 7.6e-07 57.8 74 43.2
BraA04t16085Z Brassica rapa HOM05D002974 ORTHO05D002992 9.9e-07 57.4 126 36.5
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 9.9e-07 57.4 135 33.3
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 9.9e-07 57.4 131 33.6
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 9.9e-07 57.4 53 62.3
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 9.9e-07 57.4 123 39.8
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 9.9e-07 57.4 124 36.3
Zm00001eb005210 Zea mays HOM05D002974 ORTHO05D002992 9.9e-07 57.4 123 36.6
BcaC07g40124 Brassica carinata HOM05D002974 ORTHO05D002992 1.3e-06 57.0 119 40.3
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 1.3e-06 57.0 61 52.5
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 1.3e-06 57.0 53 62.3
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 1.3e-06 57.0 45 64.4
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 1.3e-06 57.0 45 64.4
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 1.3e-06 57.0 60 55.0
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 1.3e-06 57.0 60 55.0
Zm00001eb369260 Zea mays HOM05D002974 ORTHO05D002992 1.3e-06 57.0 53 60.4
BcaC08g44803 Brassica carinata HOM05D002974 ORTHO05D002992 1.7e-06 56.6 63 55.6
BolC6t37544H Brassica oleracea HOM05D002974 ORTHO05D002992 1.7e-06 56.6 63 55.6
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 1.7e-06 56.6 52 57.7
Oeu011571.1 Olea europaea HOM05D002974 ORTHO05D002992 1.7e-06 56.6 127 33.1
Psat4g145360 Pisum sativum HOM05D002974 ORTHO05D002992 1.7e-06 56.6 46 63.0
SalBow1G0087 Salvia bowleyana HOM05D064831 ORTHO05D002992 1.7e-06 56.6 103 39.8
SalBow1G1187 Salvia bowleyana HOM05D064831 ORTHO05D002992 1.7e-06 56.6 103 39.8
SalBow6G6653 Salvia bowleyana HOM05D002974 ORTHO05D002992 1.7e-06 56.6 50 60.0
TPR.G22516 Trifolium pratense HOM05D002974 ORTHO05D002992 1.7e-06 56.6 46 63.0
ATR1096G079 Amborella trichopoda HOM05D002974 ORTHO05D002992 2.2e-06 56.2 49 63.3
C04p35760 Brassica napus HOM05D002974 ORTHO05D002992 2.2e-06 56.2 132 34.8
C06p23750 Brassica napus HOM05D002974 ORTHO05D002992 2.2e-06 56.2 67 52.2
BraA04t16084Z Brassica rapa HOM05D002974 ORTHO05D002992 2.2e-06 56.2 121 37.2
Os05g0390800 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 2.2e-06 56.2 121 38.0
Sed0004403 Sechium edule HOM05D002974 ORTHO05D002992 2.2e-06 56.2 48 58.3
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 2.2e-06 56.2 46 58.7
BcaC02g09866 Brassica carinata HOM05D002974 ORTHO05D002992 2.9e-06 55.8 132 34.8
BolC4t25224H Brassica oleracea HOM05D002974 ORTHO05D002992 2.9e-06 55.8 132 34.8
Glyma.04G134200 Glycine max HOM05D002974 ORTHO05D002992 3.8e-06 55.5 45 62.2
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 3.8e-06 55.5 56 53.6
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 3.8e-06 55.5 73 45.2
BcaB02g08350 Brassica carinata HOM05D002974 ORTHO05D002992 4.9e-06 55.1 128 35.9
CANSAT56G2792 Cannabis sativa HOM05D002974 ORTHO05D002992 4.9e-06 55.1 56 60.7
Lsat_1_v5_gn_5_156980 Lactuca sativa HOM05D002974 ORTHO05D002992 4.9e-06 55.1 131 32.8
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 4.9e-06 55.1 79 43.0
SGA_v2.0_scaffold232G43495 Striga asiatica HOM05D002974 ORTHO05D002992 4.9e-06 55.1 123 33.3
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 4.9e-06 55.1 120 34.2
BcaC07g39979 Brassica carinata HOM05D002974 ORTHO05D002992 6.4e-06 54.7 47 66.0
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 6.4e-06 54.7 119 34.5
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 6.4e-06 54.7 45 68.9
Migut.B01240 Erythranthe guttata HOM05D002974 ORTHO05D002992 6.4e-06 54.7 123 35.0
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 6.4e-06 54.7 57 52.6
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 6.4e-06 54.7 119 32.8
SGA_v2.0_scaffold105G30292 Striga asiatica HOM05D002974 ORTHO05D002992 6.4e-06 54.7 54 53.7
SGA_v2.0_scaffold105G30310 Striga asiatica HOM05D002974 ORTHO05D002992 6.4e-06 54.7 54 53.7
THA.LOC104803260 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 6.4e-06 54.7 99 43.4
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 6.4e-06 54.7 51 54.9
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 8.4e-06 54.3 56 51.8
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 8.4e-06 54.3 56 51.8


User provided reference genes

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