Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 8.1e-269 929.9 481 100.0
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 1.3e-173 613.6 491 70.3
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 1.1e-167 594.0 490 66.7
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 1.5e-161 573.5 488 65.0
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 1.7e-157 560.1 490 64.9
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 8.4e-157 557.8 451 66.7
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 1.9e-156 556.6 447 69.4
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 2.4e-156 556.2 452 66.8
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 4.6e-155 552.0 481 64.2
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 1.3e-154 550.4 434 67.3
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 2.3e-154 549.7 448 67.0
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 3.0e-154 549.3 436 65.6
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 5.1e-154 548.5 441 68.0
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.5e-153 547.0 441 67.8
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 5.6e-153 545.0 456 65.6
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 2.1e-152 543.1 447 65.8
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.8e-151 540.0 440 67.5
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 2.9e-149 532.7 434 65.4
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 8.4e-149 531.2 505 60.8
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.6e-147 526.9 436 66.3
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 3.5e-147 525.8 453 64.0
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 1.0e-146 524.2 444 63.3
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 3.9e-146 522.3 447 60.9
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 5.1e-146 521.9 490 59.4
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 8.7e-146 521.2 504 61.7
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 1.9e-145 520.0 448 63.6
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 3.3e-145 519.2 447 61.5
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 1.4e-143 513.8 467 63.0
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 1.4e-143 513.8 439 64.2
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 5.3e-143 511.9 504 60.3
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 4.5e-142 508.8 458 61.1
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 2.9e-141 506.1 447 62.0
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 6.7e-138 495.0 502 59.8
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 1.5e-137 493.8 439 63.3
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 2.5e-137 493.0 453 60.5
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 2.8e-136 489.6 449 61.7
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 1.5e-134 483.8 457 59.3
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.3e-133 480.7 464 60.3
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 1.3e-133 480.7 490 57.6
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 3.8e-133 479.2 464 59.9
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 1.4e-132 477.2 464 59.7
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 4.2e-132 475.7 514 54.5
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 5.5e-132 475.3 387 66.9
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 7.1e-132 474.9 464 60.1
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.3e-130 470.7 408 63.7
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 2.3e-130 469.9 506 54.7
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 3.0e-130 469.5 463 59.0
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 3.0e-130 469.5 408 63.5
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 5.1e-130 468.8 464 58.4
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 6.7e-130 468.4 408 63.7
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 8.7e-130 468.0 503 55.1
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 1.9e-129 466.8 440 60.0
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 3.1e-127 459.5 441 57.6
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 5.0e-125 452.2 444 59.5
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 5.0e-125 452.2 485 53.8
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 3.2e-124 449.5 462 55.4
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 1.2e-123 447.6 488 54.1
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 4.6e-123 445.7 491 55.4
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 6.1e-123 445.3 457 55.8
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 7.9e-123 444.9 484 53.9
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 1.8e-122 443.7 433 58.4
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 2.3e-122 443.4 432 57.6
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 3.0e-122 443.0 442 57.5
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 5.7e-121 438.7 512 53.7
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 2.8e-120 436.4 459 56.9
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 6.3e-120 435.3 492 53.0
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 1.1e-119 434.5 456 54.8
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 1.8e-119 433.7 464 53.4
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 4.1e-119 432.6 424 58.7
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 7.7e-118 428.3 506 51.6
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 1.0e-117 427.9 491 52.1
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 2.2e-117 426.8 397 60.7
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 1.1e-116 424.5 448 54.9
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 9.4e-116 421.4 415 57.1
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 1.6e-115 420.6 483 50.9
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 2.1e-115 420.2 451 59.4
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.0e-114 417.9 402 58.5
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 3.0e-114 416.4 452 54.9
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 6.7e-114 415.2 455 54.3
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 8.8e-114 414.8 466 54.1
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 1.5e-113 414.1 406 56.7
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 2.5e-113 413.3 407 57.2
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 4.3e-113 412.5 421 58.0
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 7.4e-113 411.8 417 56.1
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 1.3e-112 411.0 421 57.5
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 2.2e-112 410.2 400 56.8
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 1.4e-111 407.5 421 57.5
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 4.1e-111 406.0 454 53.7
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 1.4e-108 397.5 453 51.7
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 1.9e-108 397.1 501 49.3
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 5.5e-108 395.6 450 52.0
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 1.2e-107 394.4 454 52.9
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 6.1e-107 392.1 400 57.2
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.1e-105 387.9 434 50.5
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 3.1e-103 379.8 350 60.9
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 5.9e-102 375.6 472 47.9
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 7.7e-102 375.2 433 49.7
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 3.8e-101 372.9 506 46.6
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 6.5e-101 372.1 431 51.0
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 1.5e-100 370.9 343 59.8
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 4.2e-100 369.4 422 50.7
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 4.2e-100 369.4 408 52.2
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 1.2e-94 351.3 411 48.9
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 1.6e-94 350.9 489 42.9
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 5.9e-94 349.0 442 47.1
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 1.2e-89 334.7 425 47.5
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 1.8e-87 327.4 409 47.2
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 1.7e-85 320.9 473 44.2
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 3.2e-84 316.6 299 58.9
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 3.2e-84 316.6 201 77.6
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 7.2e-84 315.5 469 43.7
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 2.1e-83 313.9 501 42.9
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 6.1e-83 312.4 442 43.7
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 1.8e-82 310.8 495 41.2
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 2.0e-81 307.4 499 40.9
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 6.3e-80 302.4 205 73.7
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 1.6e-78 297.7 397 50.9
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 4.5e-78 296.2 420 44.3
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.0e-77 295.0 420 44.3
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 9.5e-76 288.5 378 45.2
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 2.1e-75 287.3 390 43.8
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 6.1e-75 285.8 497 39.8
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 8.0e-75 285.4 497 39.8
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 2.6e-73 280.4 406 41.4
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 3.4e-73 280.0 466 41.2
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 7.5e-73 278.9 209 65.1
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 6.4e-72 275.8 490 38.6
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 1.8e-71 274.2 397 41.3
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 1.7e-69 267.7 192 70.8
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 8.3e-64 248.8 478 35.4
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 3.9e-61 240.0 419 38.2
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.0e-57 227.6 413 36.8
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 3.4e-57 226.9 382 39.0
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 2.7e-54 217.2 418 34.4
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 4.6e-54 216.5 413 38.0
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 9.5e-52 208.8 412 36.4
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 4.7e-51 206.5 160 63.8
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 8.1e-51 205.7 168 63.7
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 8.1e-51 205.7 168 63.7
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 1.5e-49 201.4 421 32.5
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 9.2e-47 192.2 437 31.6
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 8.1e-43 179.1 171 53.8
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 1.1e-42 178.7 168 54.2
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 6.8e-42 176.0 161 54.7
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 1.0e-37 162.2 160 48.1
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.3e-37 161.8 262 41.6
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.3e-37 161.8 262 41.6
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 8.7e-37 159.1 108 69.4
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 1.9e-36 157.9 385 31.7
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 8.1e-35 152.5 149 53.0
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 1.2e-30 138.7 336 33.9
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 6.0e-30 136.3 337 32.9
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 3.0e-21 107.5 285 31.2
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 7.4e-20 102.8 111 54.1
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 2.0e-09 68.2 120 34.2
SEGI_40713 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.2e-08 64.7 117 29.9


User provided reference genes

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