Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001214 Camellia sinensis var. sinensis HOM05D006062 ORTHO05D007613 2.2e-160 568.9 291 100.0
GSVIVG01024454001 Vitis vinifera HOM05D006062 ORTHO05D007613 3.3e-116 422.2 295 78.6
Cfa015906 Carpinus fangiana HOM05D006062 ORTHO05D007613 2.2e-115 419.5 295 75.6
Potri.019G042600 Populus trichocarpa HOM05D006062 ORTHO05D007613 8.5e-112 407.5 295 72.5
QL09p026245 Quercus lobata HOM05D006062 ORTHO05D007613 8.5e-112 407.5 295 73.2
Manes.08G164800 Manihot esculenta HOM05D006062 ORTHO05D007613 1.1e-111 407.1 295 74.6
SGA_v2.0_scaffold18G08502 Striga asiatica HOM05D006062 ORTHO05D007613 1.2e-110 403.7 292 73.3
Gohir.D03G049700 Gossypium hirsutum HOM05D006062 ORTHO05D007613 2.7e-110 402.5 296 75.7
CiPaw.06G020400 Carya illinoinensis HOM05D006062 ORTHO05D007613 3.6e-110 402.1 295 73.6
LjContig00222g0021869 Lotus japonicus HOM05D006062 ORTHO05D007613 4.6e-110 401.7 295 73.9
Eucgr.K00099 Eucalyptus grandis HOM05D006062 ORTHO05D007613 6.1e-110 401.4 294 73.5
Thecc.05G207500 Theobroma cacao HOM05D006062 ORTHO05D007613 7.9e-110 401.0 298 75.2
Gohir.A02G139100 Gossypium hirsutum HOM05D006062 ORTHO05D007613 1.4e-109 400.2 296 75.0
Actinidia18696 Actinidia chinensis HOM05D006062 ORTHO05D007613 2.3e-109 399.4 286 73.8
Duzib177G0391 Durio zibethinus HOM05D006062 ORTHO05D007613 6.7e-109 397.9 297 74.7
Gorai.003G051200 Gossypium raimondii HOM05D006062 ORTHO05D007613 8.8e-109 397.5 296 75.0
TWI60G0061 Tripterygium wilfordii HOM05D006062 ORTHO05D007613 5.7e-108 394.8 287 73.9
RcHm_v2.0_Chr1g0383771 Rosa chinensis HOM05D006062 ORTHO05D007613 9.7e-108 394.0 298 72.8
MSTRG.26938 Avicennia marina HOM05D006062 ORTHO05D007613 1.8e-106 389.8 286 72.7
Solyc03g096850.4 Solanum lycopersicum HOM05D006062 ORTHO05D007613 3.1e-106 389.0 298 70.1
CAN.G303.70 Capsicum annuum HOM05D006062 ORTHO05D007613 4.1e-106 388.7 300 69.7
Sabra19G0053200 Salix brachista HOM05D006062 ORTHO05D007613 4.1e-106 388.7 334 63.5
MD07G1305400 Malus domestica HOM05D006062 ORTHO05D007613 1.5e-105 386.7 301 71.8
Sopen03g027600 Solanum pennellii HOM05D006062 ORTHO05D007613 1.5e-105 386.7 298 69.5
Prupe.2G323500 Prunus persica HOM05D006062 ORTHO05D007613 2.6e-105 386.0 305 72.8
CANSAT21G2164 Cannabis sativa HOM05D006062 ORTHO05D007613 4.5e-105 385.2 277 75.8
Hma1.2p1_0758F.1_g213560 Hydrangea macrophylla HOM05D006062 ORTHO05D007613 4.5e-105 385.2 257 76.7
PGSC0003DMG400000569 Solanum tuberosum HOM05D006062 ORTHO05D007613 5.9e-105 384.8 298 69.5
Glyma.01G229800 Glycine max HOM05D006062 ORTHO05D007613 7.7e-105 384.4 294 71.4
FvH4_7g33550 Fragaria vesca HOM05D006062 ORTHO05D007613 1.0e-104 384.0 296 73.3
DCAR_014570 Daucus carota HOM05D006062 ORTHO05D007613 6.5e-104 381.3 294 69.7
Duzib106G1742 Durio zibethinus HOM05D006062 ORTHO05D007613 6.5e-104 381.3 283 72.1
Atru.chr12.2018 Acer truncatum HOM05D006062 ORTHO05D007613 1.4e-103 380.2 260 77.3
Glyma.11G012700 Glycine max HOM05D006062 ORTHO05D007613 2.5e-103 379.4 294 70.7
Phvul.002G037500 Phaseolus vulgaris HOM05D006062 ORTHO05D007613 3.2e-103 379.0 294 70.7
VMungo0720G1055 Vigna mungo HOM05D006062 ORTHO05D007613 5.5e-103 378.3 295 70.5
Aqoxy3G02060 Aquilegia oxysepala HOM05D006062 ORTHO05D007613 1.6e-102 376.7 295 69.5
Cpa.g.sc39.53 Carica papaya HOM05D006062 ORTHO05D007613 2.7e-102 375.9 287 71.8
CsaV3_5G005280 Cucumis sativus L. HOM05D006062 ORTHO05D007613 4.7e-102 375.2 296 68.6
PSO782G5695 Papaver somniferum HOM05D006062 ORTHO05D007613 6.1e-102 374.8 297 68.0
MELO3C005432.2 Cucumis melo HOM05D006062 ORTHO05D007613 2.3e-101 372.9 297 70.0
Migut.F00106 Erythranthe guttata HOM05D006062 ORTHO05D007613 3.0e-101 372.5 293 69.6
Psat2g187840 Pisum sativum HOM05D006062 ORTHO05D007613 6.7e-101 371.3 292 71.2
TPR.G37875 Trifolium pratense HOM05D006062 ORTHO05D007613 6.7e-101 371.3 294 70.1
PSO063G5144 Papaver somniferum HOM05D006062 ORTHO05D007613 1.1e-100 370.5 297 67.3
Lalb_Chr05g0211331 Lupinus albus HOM05D006062 ORTHO05D007613 1.5e-100 370.2 298 70.1
Sed0000932 Sechium edule HOM05D006062 ORTHO05D007613 3.3e-100 369.0 292 69.5
PGR142G0857 Punica granatum HOM05D006062 ORTHO05D007613 9.7e-100 367.5 271 73.8
Medtr5g008050 Medicago truncatula HOM05D006062 ORTHO05D007613 4.8e-99 365.2 293 69.3
Hund02967 Selenicereus undatus HOM05D006062 ORTHO05D007613 4.8e-99 365.2 298 68.8
Hma1.2p1_0758F.1_g213550 Hydrangea macrophylla HOM05D006062 ORTHO05D007613 6.3e-99 364.8 298 68.1
THA.LOC104820874 Tarenaya hassleriana HOM05D006062 ORTHO05D007613 1.8e-98 363.2 295 67.8
BolC2t06792H Brassica oleracea HOM05D006062 ORTHO05D007613 7.0e-98 361.3 290 67.6
Thhalv10014045m.g Eutrema salsugineum HOM05D006062 ORTHO05D007613 2.0e-97 359.8 291 67.7
Rhsim09G0211900 Rhododendron simsii HOM05D006062 ORTHO05D007613 2.6e-97 359.4 295 70.2
Aa31LG11G12480 Aethionema arabicum HOM05D006062 ORTHO05D007613 3.5e-97 359.0 287 68.3
BcaC03g18534 Brassica carinata HOM05D006062 ORTHO05D007613 3.5e-97 359.0 290 67.2
CARHR196050 Cardamine hirsuta HOM05D006062 ORTHO05D007613 5.9e-97 358.2 291 67.4
Ciclev10012505m.g Citrus clementina HOM05D006062 ORTHO05D007613 1.7e-96 356.7 292 68.5
BcaNung00424 Brassica carinata HOM05D006062 ORTHO05D007613 2.2e-96 356.3 294 67.0
Carub.0006s1536 Capsella rubella HOM05D006062 ORTHO05D007613 2.9e-96 355.9 291 67.0
AL6G28220 Arabidopsis lyrata HOM05D006062 ORTHO05D007613 6.5e-96 354.8 290 66.6
C02p08780 Brassica napus HOM05D006062 ORTHO05D007613 6.5e-96 354.8 295 66.4
BraA02t05361Z Brassica rapa HOM05D006062 ORTHO05D007613 8.5e-96 354.4 296 66.9
Sp6g27050 Schrenkiella parvula HOM05D006062 ORTHO05D007613 1.4e-95 353.6 291 66.7
EL10Ac3g05103 Beta vulgaris HOM05D006062 ORTHO05D007613 4.2e-95 352.1 296 66.9
ATR0829G005 Amborella trichopoda HOM05D006062 ORTHO05D007613 5.5e-95 351.7 294 66.0
ECA233G2527 Erigeron canadensis HOM05D006062 ORTHO05D007613 5.5e-95 351.7 293 66.6
A02p03960 Brassica napus HOM05D006062 ORTHO05D007613 7.2e-95 351.3 296 66.6
AT5G17170 Arabidopsis thaliana HOM05D006062 ORTHO05D007613 1.2e-94 350.5 291 66.3
Ca_24458_v3 Cicer arietinum L. HOM05D006062 ORTHO05D007613 3.6e-94 349.0 299 64.9
Ca_24464_v3 Cicer arietinum L. HOM05D006062 ORTHO05D007613 3.6e-94 349.0 299 64.9
HanXRQChr04g0105241 Helianthus annuus HOM05D006062 ORTHO05D007613 1.8e-93 346.7 292 67.1
AUR62005918 Chenopodium quinoa HOM05D006062 ORTHO05D007613 1.5e-92 343.6 293 66.2
HPP92_025526 Vanilla planifolia HOM05D006062 ORTHO05D007613 4.4e-92 342.0 222 77.9
HPP92_025509 Vanilla planifolia HOM05D006062 ORTHO05D007613 7.4e-92 341.3 222 77.9
ClCG01G005020 Citrullus lanatus HOM05D006062 ORTHO05D007613 2.0e-89 333.2 297 63.6
Os08g0162600 Oryza sativa ssp. japonica HOM05D006062 ORTHO05D007613 5.9e-89 331.6 291 63.9
SEGI_19152 Sequoiadendron giganteum HOM05D006062 ORTHO05D007613 1.0e-88 330.9 259 67.6
Ah.13g071240 Amaranthus hybridus HOM05D006062 ORTHO05D007613 3.8e-88 328.9 293 63.5
BolC9t58838H Brassica oleracea HOM05D006062 ORTHO05D007613 6.5e-88 328.2 283 65.4
Cc02_g00440 Coffea canephora HOM05D006062 ORTHO05D007613 1.5e-87 327.0 299 63.2
MBI04_g27273_MAGBIO Magnolia biondii HOM05D006062 ORTHO05D007613 4.2e-87 325.5 294 64.3
TAR375G0226 Trochodendron aralioides HOM05D006062 ORTHO05D007613 8.0e-86 321.2 212 77.8
C09p60030 Brassica napus HOM05D006062 ORTHO05D007613 1.0e-85 320.9 231 72.3
Peaxi162Scf01650g00050 Petunia axillaris HOM05D006062 ORTHO05D007613 1.8e-85 320.1 297 62.3
BcaC04g18827 Brassica carinata HOM05D006062 ORTHO05D007613 6.7e-85 318.2 298 60.7
Zm00001eb415470 Zea mays HOM05D006062 ORTHO05D007613 6.7e-85 318.2 289 60.9
Haze_00586 Corylus avellana HOM05D006062 ORTHO05D007613 2.8e-83 312.8 295 60.7
SMO140G0084 Selaginella moellendorffii HOM05D006062 ORTHO05D007613 1.8e-82 310.1 218 73.4
Pp3c10_15730 Physcomitrium patens HOM05D006062 ORTHO05D007613 7.7e-81 304.7 234 66.7
Mapoly0041s0075 Marchantia polymorpha HOM05D006062 ORTHO05D007613 5.0e-80 302.0 290 59.0
SalBow4G0173 Salvia bowleyana HOM05D006062 ORTHO05D007613 2.5e-79 299.7 271 62.0
A10p22220 Brassica napus HOM05D006062 ORTHO05D007613 3.2e-79 299.3 196 79.1
BraA10t44281Z Brassica rapa HOM05D006062 ORTHO05D007613 3.2e-79 299.3 196 79.1
arahy.Tifrunner.gnm1.ann1.GZNV26 Arachis hypogaea HOM05D006062 ORTHO05D007613 2.7e-78 296.2 290 60.0
Sc25g0001120 Simmondsia chinensis HOM05D006062 ORTHO05D007613 1.4e-77 293.9 226 69.0
Actinidia28267 Actinidia chinensis HOM05D006062 ORTHO05D007613 1.8e-77 293.5 291 60.1
AUR62028145 Chenopodium quinoa HOM05D006062 ORTHO05D007613 1.6e-73 280.4 291 58.8
arahy.Tifrunner.gnm1.ann1.GUDI7G Arachis hypogaea HOM05D006062 ORTHO05D007613 1.5e-71 273.9 290 56.9
CDE02G0118 Ceratophyllum demersum HOM05D006062 ORTHO05D007613 3.3e-71 272.7 220 70.0
Lj3A890T59 Lonicera japonica HOM05D006062 ORTHO05D007613 1.6e-70 270.4 200 76.0
Lsat_1_v5_gn_8_3801 Lactuca sativa HOM05D006062 ORTHO05D007613 2.3e-69 266.5 295 57.3
CDE02G0767 Ceratophyllum demersum HOM05D006062 ORTHO05D007613 1.5e-68 263.8 204 69.1
FAN01G1199 Fragaria x ananassa HOM05D006062 ORTHO05D007613 4.9e-67 258.8 203 72.4
FAN10G3926 Fragaria x ananassa HOM05D006062 ORTHO05D007613 4.9e-67 258.8 201 73.6
FAN10G2030 Fragaria x ananassa HOM05D006062 ORTHO05D007613 6.3e-67 258.5 201 73.6
Nn1g02035 Nelumbo nucifera HOM05D006062 ORTHO05D007613 3.9e-64 249.2 173 74.6
COL.COLO4_08912 Corchorus olitorius HOM05D006062 ORTHO05D007613 5.6e-63 245.4 197 72.6
MD01G1233200 Malus domestica HOM05D006062 ORTHO05D007613 1.2e-62 244.2 263 56.7
Dinv29176 Davidia involucrata HOM05D006062 ORTHO05D007613 1.5e-60 237.3 169 80.5
Nitab4.5_0002302g0030 Nicotiana tabacum HOM05D006062 ORTHO05D007613 2.6e-60 236.5 298 50.0
unitig_52.g17697 Utricularia gibba HOM05D006062 ORTHO05D007613 2.4e-50 203.4 165 67.3
Cre12.g510400 Chlamydomonas reinhardtii HOM05D006062 ORTHO05D007613 4.4e-44 182.6 203 48.3
Duzib187G0879 Durio zibethinus HOM05D006062 ORTHO05D007613 1.3e-43 181.0 137 67.9
TAR375G0371 Trochodendron aralioides HOM05D006062 ORTHO05D007613 5.6e-39 165.6 139 61.9
PRCOL_00001509 Prasinoderma coloniale HOM05D006062 ORTHO05D007613 2.0e-36 157.1 230 45.2
AagrBONN_evm.TU.Sc2ySwM_117.4047 Anthoceros agrestis HOM05D006062 ORTHO05D007613 3.2e-34 149.8 144 57.6
Cc11_g03890 Coffea canephora HOM05D006062 ORTHO05D007613 9.3e-34 148.3 206 49.0
Nitab4.5_0000021g0330 Nicotiana tabacum HOM05D006062 ORTHO05D007613 4.6e-33 146.0 297 37.7
Aqoxy1G04105 Aquilegia oxysepala HOM05D006062 ORTHO05D007613 1.5e-31 141.0 127 59.8
CBR_g41688 Chara braunii HOM05D006062 ORTHO05D007613 1.9e-31 140.6 92 78.3
unitig_52.g17696 Utricularia gibba HOM05D006062 ORTHO05D007613 9.6e-31 138.3 94 73.4
FAN03G0703 Fragaria x ananassa HOM05D006062 ORTHO05D007613 2.8e-30 136.7 95 72.6
Oeu033092.1 Olea europaea HOM05D006062 ORTHO05D007613 2.1e-22 110.5 55 96.4
COL.COLO4_08913 Corchorus olitorius HOM05D006062 ORTHO05D007613 6.9e-21 105.5 57 91.2
CBR_g41690 Chara braunii HOM05D006062 ORTHO05D008129 2.2e-19 100.5 112 50.9
Lj3A890T58 Lonicera japonica HOM05D006062 ORTHO05D007613 4.9e-19 99.4 59 76.3
CDE02G3588 Ceratophyllum demersum HOM05D006062 ORTHO05D007613 1.1e-15 88.2 182 40.7
Duzib177G0960 Durio zibethinus HOM05D006062 ORTHO05D007613 1.1e-15 88.2 105 61.9
A02p04000 Brassica napus HOM05D001822 ORTHO05D001744 1.4e-13 81.3 72 58.3
BraA02t05363Z Brassica rapa HOM05D001822 ORTHO05D001744 5.3e-13 79.3 74 56.8
MCO07G731 Micromonas commoda HOM05D000104 ORTHO05D006071 3.8e-11 73.2 104 36.5
CBR_g66797 Chara braunii HOM05D005410 ORTHO05D007394 1.1e-07 61.6 95 36.8
Aqoxy3G01868 Aquilegia oxysepala HOM05D006645 ORTHO05D008129 2.5e-07 60.5 105 36.2
Lalb_Chr12g0204581 Lupinus albus HOM05D005410 ORTHO05D007394 5.7e-07 59.3 70 44.3
Ca_10875_v3 Cicer arietinum L. HOM05D006645 ORTHO05D008129 7.4e-07 58.9 119 33.6
DCAR_016335 Daucus carota HOM05D006645 ORTHO05D008129 7.4e-07 58.9 118 32.2
Potri.015G108100 Populus trichocarpa HOM05D006645 ORTHO05D008129 7.4e-07 58.9 124 33.1
ATR0697G079 Amborella trichopoda HOM05D005410 ORTHO05D007394 1.3e-06 58.2 81 37.0
VMungo0251G1592 Vigna mungo HOM05D005410 ORTHO05D007394 1.3e-06 58.2 70 42.9
ATR0582G272 Amborella trichopoda HOM05D006645 ORTHO05D008129 1.6e-06 57.8 105 32.4
MD03G1003100 Malus domestica HOM05D005410 ORTHO05D007394 1.6e-06 57.8 75 42.7
TAR369G0462 Trochodendron aralioides HOM05D005410 ORTHO05D007394 1.6e-06 57.8 70 42.9
Glyma.08G124900 Glycine max HOM05D005410 ORTHO05D007394 2.1e-06 57.4 70 41.4
Os11g0528500 Oryza sativa ssp. japonica HOM05D006645 ORTHO05D008129 2.1e-06 57.4 126 29.4
Glyma.05G166800 Glycine max HOM05D005410 ORTHO05D007394 2.8e-06 57.0 70 41.4
Manes.06G127300 Manihot esculenta HOM05D006645 ORTHO05D008129 2.8e-06 57.0 132 31.1
Medtr8g088420 Medicago truncatula HOM05D005410 ORTHO05D007394 2.8e-06 57.0 70 42.9
TPR.G6787 Trifolium pratense HOM05D005410 ORTHO05D007394 2.8e-06 57.0 70 42.9
CiPaw.12G000500 Carya illinoinensis HOM05D006645 ORTHO05D008129 3.7e-06 56.6 127 32.3
Gohir.A04G090700 Gossypium hirsutum HOM05D005410 ORTHO05D007394 3.7e-06 56.6 83 37.3
Gohir.D04G130700 Gossypium hirsutum HOM05D005410 ORTHO05D007394 3.7e-06 56.6 83 37.3
Gorai.012G114400 Gossypium raimondii HOM05D005410 ORTHO05D007394 3.7e-06 56.6 83 37.3
HanXRQChr07g0186621 Helianthus annuus HOM05D005410 ORTHO05D007394 3.7e-06 56.6 140 30.0
Hma1.2p1_0452F.1_g155930 Hydrangea macrophylla HOM05D006645 ORTHO05D008129 3.7e-06 56.6 130 30.0
Atru.chr3.2102 Acer truncatum HOM05D005410 ORTHO05D007394 4.8e-06 56.2 70 41.4
Atru.chr3.2395 Acer truncatum HOM05D005410 ORTHO05D007394 4.8e-06 56.2 70 41.4
Atru.chr6.1936 Acer truncatum HOM05D006645 ORTHO05D008129 4.8e-06 56.2 119 31.9
Actinidia16239 Actinidia chinensis HOM05D005410 ORTHO05D007394 4.8e-06 56.2 148 32.4
AUR62005847 Chenopodium quinoa HOM05D005410 ORTHO05D007394 4.8e-06 56.2 80 37.5
Nitab4.5_0000976g0110 Nicotiana tabacum HOM05D006645 ORTHO05D008129 4.8e-06 56.2 113 32.7
Phvul.002G247200 Phaseolus vulgaris HOM05D005410 ORTHO05D007394 4.8e-06 56.2 70 40.0
Pp3c14_10490 Physcomitrium patens HOM05D006645 ORTHO05D008129 4.8e-06 56.2 75 32.0
Rhsim08G0198600 Rhododendron simsii HOM05D006645 ORTHO05D008129 4.8e-06 56.2 161 28.0
Sabra15G0130800 Salix brachista HOM05D006645 ORTHO05D008129 4.8e-06 56.2 120 33.3
Lj4g0005740 Lotus japonicus HOM05D005410 ORTHO05D007394 6.2e-06 55.8 70 44.3
MD11G1002900 Malus domestica HOM05D005410 ORTHO05D007394 6.2e-06 55.8 75 41.3
Psat7g064320 Pisum sativum HOM05D005410 ORTHO05D007394 6.2e-06 55.8 70 42.9
RcHm_v2.0_Chr5g0083861 Rosa chinensis HOM05D005410 ORTHO05D007394 6.2e-06 55.8 70 42.9
CDE05G3351 Ceratophyllum demersum HOM05D006645 ORTHO05D008129 8.2e-06 55.5 166 27.1
Cc04_g05780 Coffea canephora HOM05D006645 ORTHO05D008129 8.2e-06 55.5 113 30.1
Mapoly0188s0012 Marchantia polymorpha HOM05D006645 ORTHO05D008129 8.2e-06 55.5 121 33.9
Nn2g15872 Nelumbo nucifera HOM05D005410 ORTHO05D007394 8.2e-06 55.5 70 42.9
Peaxi162Scf00314g00728 Petunia axillaris HOM05D006645 ORTHO05D008129 8.2e-06 55.5 126 31.7
Pp3c2_6110 Physcomitrium patens HOM05D006645 ORTHO05D008129 8.2e-06 55.5 64 35.9
SMO238G0020 Selaginella moellendorffii HOM05D005410 ORTHO05D007394 8.2e-06 55.5 70 40.0
SMO329G0030 Selaginella moellendorffii HOM05D005410 ORTHO05D007394 8.2e-06 55.5 70 40.0
Hund10027 Selenicereus undatus HOM05D006645 ORTHO05D008129 8.2e-06 55.5 113 31.0


User provided reference genes

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