Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001207 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 8.6e-72 273.5 131 100.0
CSS0007655 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 2.0e-52 209.1 111 87.4
CSS0037826 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 2.0e-52 209.1 111 87.4
MD16G1027400 Malus domestica HOM05D005599 ORTHO05D006921 3.7e-51 204.9 106 87.7
Rhsim09G0066400 Rhododendron simsii HOM05D005599 ORTHO05D006921 6.4e-51 204.1 106 86.8
MD13G1024900 Malus domestica HOM05D005599 ORTHO05D006921 1.1e-50 203.4 106 86.8
Prupe.1G325600 Prunus persica HOM05D005599 ORTHO05D006921 1.4e-50 203.0 106 88.7
Duzib251G0393 Durio zibethinus HOM05D005599 ORTHO05D006921 3.2e-50 201.8 105 88.6
Cpa.g.sc65.146 Carica papaya HOM05D005599 ORTHO05D006921 4.1e-50 201.4 110 84.5
Thecc.02G282300 Theobroma cacao HOM05D005599 ORTHO05D006921 4.1e-50 201.4 105 87.6
vmacro00414 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 7.1e-50 200.7 106 86.8
Gorai.005G161400 Gossypium raimondii HOM05D005599 ORTHO05D006921 9.2e-50 200.3 107 86.0
Manes.15G128100 Manihot esculenta HOM05D005599 ORTHO05D006921 1.2e-49 199.9 106 86.8
Hma1.2p1_0096F.1_g047800 Hydrangea macrophylla HOM05D005599 ORTHO05D006921 1.6e-49 199.5 106 84.0
COL.COLO4_20491 Corchorus olitorius HOM05D005599 ORTHO05D006921 2.7e-49 198.7 105 87.6
Dinv14427 Davidia involucrata HOM05D005599 ORTHO05D006921 2.7e-49 198.7 106 84.9
QL01p001565 Quercus lobata HOM05D005599 ORTHO05D006921 2.7e-49 198.7 106 85.8
Haze_10995 Corylus avellana HOM05D005599 ORTHO05D006921 3.5e-49 198.4 116 77.6
Oeu045860.1 Olea europaea HOM05D005599 ORTHO05D006921 3.5e-49 198.4 106 84.0
Ciclev10017195m.g Citrus clementina HOM05D005599 ORTHO05D006921 4.6e-49 198.0 106 84.9
vmacro14440 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 6.0e-49 197.6 106 84.0
CiPaw.06G011400 Carya illinoinensis HOM05D005599 ORTHO05D006921 1.0e-48 196.8 106 84.9
Cc11_g08600 Coffea canephora HOM05D005599 ORTHO05D006921 1.0e-48 196.8 106 83.0
EL10Ac9g21851 Beta vulgaris HOM05D005599 ORTHO05D006921 1.3e-48 196.4 106 84.9
FvH4_4g19980 Fragaria vesca HOM05D005599 ORTHO05D006921 1.7e-48 196.1 115 79.1
Sabra08G0098500 Salix brachista HOM05D005599 ORTHO05D006921 1.7e-48 196.1 119 76.5
Oeu003383.1 Olea europaea HOM05D005599 ORTHO05D006921 3.0e-48 195.3 106 84.0
TWI79G1349 Tripterygium wilfordii HOM05D005599 ORTHO05D006921 3.0e-48 195.3 106 85.8
AUR62042684 Chenopodium quinoa HOM05D005599 ORTHO05D006921 3.9e-48 194.9 106 82.1
FAN05G3069 Fragaria x ananassa HOM05D005599 ORTHO05D006921 3.9e-48 194.9 106 84.9
FAN12G4015 Fragaria x ananassa HOM05D005599 ORTHO05D006921 3.9e-48 194.9 106 84.9
FAN25G3147 Fragaria x ananassa HOM05D005599 ORTHO05D006921 3.9e-48 194.9 106 84.9
Gohir.D02G144100 Gossypium hirsutum HOM05D005599 ORTHO05D006921 3.9e-48 194.9 105 84.8
RcHm_v2.0_Chr4g0425701 Rosa chinensis HOM05D005599 ORTHO05D006921 3.9e-48 194.9 106 84.9
arahy.Tifrunner.gnm1.ann1.5G098T Arachis hypogaea HOM05D005599 ORTHO05D006921 5.1e-48 194.5 108 81.5
Gohir.A03G120800 Gossypium hirsutum HOM05D005599 ORTHO05D006921 5.1e-48 194.5 104 85.6
arahy.Tifrunner.gnm1.ann1.UU8CC3 Arachis hypogaea HOM05D005599 ORTHO05D006921 6.6e-48 194.1 108 81.5
Nitab4.5_0000426g0280 Nicotiana tabacum HOM05D005599 ORTHO05D006921 6.6e-48 194.1 104 82.7
Nitab4.5_0004230g0050 Nicotiana tabacum HOM05D005599 ORTHO05D006921 6.6e-48 194.1 104 82.7
AUR62032768 Chenopodium quinoa HOM05D005599 ORTHO05D006921 1.1e-47 193.4 106 81.1
Hund09673 Selenicereus undatus HOM05D005599 ORTHO05D006921 1.1e-47 193.4 106 83.0
Atru.chr11.497 Acer truncatum HOM05D005599 ORTHO05D006921 1.5e-47 193.0 103 83.5
ClCG07G006660 Citrullus lanatus HOM05D005599 ORTHO05D006921 1.5e-47 193.0 106 84.9
CAN.G1244.3 Capsicum annuum HOM05D005599 ORTHO05D006921 1.9e-47 192.6 104 83.7
FAN07G1516 Fragaria x ananassa HOM05D005599 ORTHO05D006921 2.5e-47 192.2 106 84.0
arahy.Tifrunner.gnm1.ann1.5FG4B2 Arachis hypogaea HOM05D005599 ORTHO05D006921 7.3e-47 190.7 105 81.9
CsaV3_5G013870 Cucumis sativus L. HOM05D005599 ORTHO05D006921 9.6e-47 190.3 106 83.0
Potri.008G129900 Populus trichocarpa HOM05D005599 ORTHO05D006921 1.2e-46 189.9 106 81.1
Sed0017153 Sechium edule HOM05D005599 ORTHO05D006921 1.2e-46 189.9 104 82.7
Sc14g0007100 Simmondsia chinensis HOM05D005599 ORTHO05D006921 2.1e-46 189.1 106 81.1
Solyc04g007700.3 Solanum lycopersicum HOM05D005599 ORTHO05D006921 2.8e-46 188.7 105 81.0
Sopen04g002790 Solanum pennellii HOM05D005599 ORTHO05D006921 2.8e-46 188.7 105 81.0
PGSC0003DMG400005984 Solanum tuberosum HOM05D005599 ORTHO05D006921 2.8e-46 188.7 104 82.7
TAR622G1178 Trochodendron aralioides HOM05D005599 ORTHO05D006921 2.8e-46 188.7 106 81.1
Glyma.16G057902 Glycine max HOM05D005599 ORTHO05D006921 3.6e-46 188.3 106 80.2
Peaxi162Scf00253g01125 Petunia axillaris HOM05D005599 ORTHO05D006921 3.6e-46 188.3 106 80.2
MELO3C018308.2 Cucumis melo HOM05D005599 ORTHO05D006921 4.7e-46 188.0 106 83.0
Cfa008617 Carpinus fangiana HOM05D005599 ORTHO05D006921 6.2e-46 187.6 106 81.1
GSVIVG01011752001 Vitis vinifera HOM05D005599 ORTHO05D006921 6.2e-46 187.6 106 78.3
BolC8t52072H Brassica oleracea HOM05D005599 ORTHO05D006921 1.1e-45 186.8 120 70.8
Phvul.001G094900 Phaseolus vulgaris HOM05D005599 ORTHO05D006921 1.1e-45 186.8 106 79.2
Glyma.19G089600 Glycine max HOM05D005599 ORTHO05D006921 1.4e-45 186.4 104 80.8
MBI16_g23758_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 1.4e-45 186.4 106 81.1
Potri.010G112300 Populus trichocarpa HOM05D005599 ORTHO05D006921 2.4e-45 185.7 104 80.8
Sabra10G0082600 Salix brachista HOM05D005599 ORTHO05D006921 2.4e-45 185.7 112 75.9
Lj6g0000510 Lotus japonicus HOM05D005599 ORTHO05D006921 4.0e-45 184.9 106 81.1
Ah.04g163140 Amaranthus hybridus HOM05D005599 ORTHO05D006921 5.2e-45 184.5 106 79.2
BraA09t41538Z Brassica rapa HOM05D005599 ORTHO05D006921 6.8e-45 184.1 123 69.1
Aa31LG2G8490 Aethionema arabicum HOM05D005599 ORTHO05D006921 8.9e-45 183.7 104 76.9
C08p45240 Brassica napus HOM05D005599 ORTHO05D006921 1.2e-44 183.3 117 70.1
PSO170G3715 Papaver somniferum HOM05D005599 ORTHO05D006921 1.2e-44 183.3 106 79.2
PSO782G0484 Papaver somniferum HOM05D005599 ORTHO05D006921 1.2e-44 183.3 106 79.2
Carub.0001s1476 Capsella rubella HOM05D005599 ORTHO05D006921 1.5e-44 183.0 106 76.4
CARHR015530 Cardamine hirsuta HOM05D005599 ORTHO05D006921 1.5e-44 183.0 106 75.5
Ca_21512_v3 Cicer arietinum L. HOM05D005599 ORTHO05D006921 1.5e-44 183.0 106 78.3
Lsat_1_v5_gn_9_79661 Lactuca sativa HOM05D005599 ORTHO05D006921 1.5e-44 183.0 104 79.8
RcHm_v2.0_Chr4g0441361 Rosa chinensis HOM05D005599 ORTHO05D006921 1.5e-44 183.0 114 77.2
DCAR_023596 Daucus carota HOM05D005599 ORTHO05D006921 2.0e-44 182.6 106 74.5
Thhalv10009435m.g Eutrema salsugineum HOM05D005599 ORTHO05D006921 2.0e-44 182.6 106 77.4
ATR0796G095 Amborella trichopoda HOM05D005599 ORTHO05D006921 2.6e-44 182.2 104 81.7
Lalb_Chr08g0237401 Lupinus albus HOM05D005599 ORTHO05D006921 4.4e-44 181.4 106 78.3
MSTRG.6631 Avicennia marina HOM05D005599 ORTHO05D006921 5.8e-44 181.0 104 77.9
AL1G27050 Arabidopsis lyrata HOM05D005599 ORTHO05D006921 7.6e-44 180.6 106 75.5
Zm00001eb161570 Zea mays HOM05D005599 ORTHO05D006921 9.9e-44 180.3 106 75.5
A09p61660 Brassica napus HOM05D005599 ORTHO05D006921 1.3e-43 179.9 104 76.9
THA.LOC104823847 Tarenaya hassleriana HOM05D005599 ORTHO05D006921 1.3e-43 179.9 106 77.4
VMungo0464G0261 Vigna mungo HOM05D005599 ORTHO05D006921 1.3e-43 179.9 106 76.4
CDE07G0704 Ceratophyllum demersum HOM05D005599 ORTHO05D006921 1.7e-43 179.5 106 79.2
HPP92_003868 Vanilla planifolia HOM05D005599 ORTHO05D006921 1.7e-43 179.5 106 78.3
HPP92_003899 Vanilla planifolia HOM05D005599 ORTHO05D006921 1.7e-43 179.5 106 78.3
Sed0011013 Sechium edule HOM05D005599 ORTHO05D006921 2.2e-43 179.1 108 78.7
AT1G14990 Arabidopsis thaliana HOM05D005599 ORTHO05D006921 3.8e-43 178.3 106 73.6
Sp1g13380 Schrenkiella parvula HOM05D005599 ORTHO05D006921 3.8e-43 178.3 106 75.5
DCAR_026778 Daucus carota HOM05D005599 ORTHO05D006921 6.4e-43 177.6 106 71.7
HanXRQChr08g0212121 Helianthus annuus HOM05D005599 ORTHO05D006921 6.4e-43 177.6 104 77.9
Os01g0606050 Oryza sativa ssp. japonica HOM05D005599 ORTHO05D006921 6.4e-43 177.6 106 75.5
Eucgr.B01298 Eucalyptus grandis HOM05D005599 ORTHO05D006921 8.4e-43 177.2 106 75.5
HanXRQChr12g0364441 Helianthus annuus HOM05D005599 ORTHO05D006921 8.4e-43 177.2 104 78.8
TPR.G19139 Trifolium pratense HOM05D005599 ORTHO05D006921 8.4e-43 177.2 106 76.4
unitig_899.g15269 Utricularia gibba HOM05D005599 ORTHO05D006921 8.4e-43 177.2 104 76.9
Medtr1g069405 Medicago truncatula HOM05D005599 ORTHO05D006921 1.1e-42 176.8 106 76.4
SGA_v2.0_scaffold181G39695 Striga asiatica HOM05D005599 ORTHO05D006921 1.1e-42 176.8 104 75.0
BraA06t24281Z Brassica rapa HOM05D005599 ORTHO05D006921 1.4e-42 176.4 107 75.7
SGA_v2.0_scaffold154G37132 Striga asiatica HOM05D005599 ORTHO05D006921 2.4e-42 175.6 104 74.0
A06p11010 Brassica napus HOM05D005599 ORTHO05D006921 4.2e-42 174.9 106 75.5
Psat6g049960 Pisum sativum HOM05D005599 ORTHO05D006921 4.2e-42 174.9 106 76.4
Dinv07654 Davidia involucrata HOM05D005599 ORTHO05D006921 5.4e-42 174.5 88 88.6
BcaB02g06563 Brassica carinata HOM05D005599 ORTHO05D006921 7.1e-42 174.1 106 74.5
PGR004G1422 Punica granatum HOM05D005599 ORTHO05D006921 7.1e-42 174.1 106 73.6
ECA236G1659 Erigeron canadensis HOM05D005599 ORTHO05D006921 1.2e-41 173.3 104 76.0
Aqoxy1G03319 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 1.6e-41 172.9 112 70.5
BolC5t30050H Brassica oleracea HOM05D005599 ORTHO05D006921 2.7e-41 172.2 104 76.0
BcaC07g38244 Brassica carinata HOM05D005599 ORTHO05D006921 1.7e-40 169.5 107 72.9
C08p09930 Brassica napus HOM05D005599 ORTHO05D006921 1.7e-40 169.5 107 72.9
BolC8t48670H Brassica oleracea HOM05D005599 ORTHO05D006921 1.7e-40 169.5 107 72.9
Aqoxy3G01068 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 3.9e-40 168.3 105 72.4
C05p13060 Brassica napus HOM05D005599 ORTHO05D006921 3.6e-38 161.8 114 68.4
CANSAT11G1373 Cannabis sativa HOM05D005599 ORTHO05D006921 1.4e-37 159.8 106 68.9
SGA_v2.0_scaffold6G03128 Striga asiatica HOM05D005599 ORTHO05D006921 5.8e-36 154.5 105 66.7
SEGI_33740 Sequoiadendron giganteum HOM05D005599 ORTHO05D006921 4.9e-35 151.4 99 69.7
Migut.M00054 Erythranthe guttata HOM05D005599 ORTHO05D006921 4.2e-34 148.3 103 70.9
Eucgr.E01608 Eucalyptus grandis HOM05D005599 ORTHO05D006921 2.7e-33 145.6 107 66.4
AUR62014127 Chenopodium quinoa HOM05D005599 ORTHO05D006921 1.8e-29 132.9 69 84.1
Eucgr.B02904 Eucalyptus grandis HOM05D005599 ORTHO05D006921 3.1e-29 132.1 95 63.2
arahy.Tifrunner.gnm1.ann1.XM49AS Arachis hypogaea HOM05D005599 ORTHO05D006921 5.3e-29 131.3 68 83.8
SGA_v2.0_scaffold2G00929 Striga asiatica HOM05D005599 ORTHO05D006921 4.6e-25 118.2 66 78.8
Pp3c16_10100 Physcomitrium patens HOM05D005599 ORTHO05D006921 1.1e-23 113.6 97 50.5
MBI16_g23757_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 7.4e-23 110.9 68 77.9
Mapoly0035s0140 Marchantia polymorpha HOM05D005599 ORTHO05D006921 7.4e-23 110.9 98 52.0
MBI16_g23756_MAGBIO Magnolia biondii HOM05D000079 ORTHO05D016475 3.7e-22 108.6 69 75.4
BcaC05g25431 Brassica carinata HOM05D005599 ORTHO05D006921 1.2e-20 103.6 106 50.0
Nn4g24251 Nelumbo nucifera HOM05D005599 ORTHO05D006921 4.5e-20 101.7 57 82.5
CBR_g40805 Chara braunii HOM05D005599 ORTHO05D006921 7.9e-17 90.9 77 54.5
DCAR_032107 Daucus carota HOM05D005599 ORTHO05D006921 1.5e-15 86.7 53 64.2
SGA_v2.0_scaffold135G34854 Striga asiatica HOM05D005599 ORTHO05D006921 5.3e-13 78.2 43 69.8
QL08p008929 Quercus lobata HOM05D005599 ORTHO05D006921 2.5e-10 69.3 44 72.7
FAN02G4440 Fragaria x ananassa HOM05D012050 ORTHO05D011158 3.7e-06 55.5 51 52.9


User provided reference genes

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