Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.4e-234 815.8 402 100.0
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.4e-234 815.8 402 100.0
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 3.2e-226 788.1 402 94.3
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 7.1e-226 786.9 402 95.0
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 1.5e-223 779.2 402 94.0
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 1.8e-221 772.3 402 92.3
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 1.8e-221 772.3 402 93.0
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 6.9e-221 770.4 402 93.0
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 9.0e-221 770.0 402 92.8
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 9.0e-221 770.0 402 93.0
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 2.0e-220 768.8 402 91.8
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 2.6e-220 768.5 402 92.5
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 3.4e-220 768.1 402 92.5
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 3.4e-220 768.1 402 91.5
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 5.8e-220 767.3 402 92.3
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 7.6e-220 766.9 402 91.5
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 9.9e-220 766.5 402 91.8
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 9.9e-220 766.5 401 91.8
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 2.2e-219 765.4 402 91.0
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 2.9e-219 765.0 402 91.3
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 1.1e-218 763.1 402 91.5
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 1.1e-218 763.1 402 91.5
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 2.4e-218 761.9 402 91.3
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 2.4e-218 761.9 402 91.0
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 2.4e-218 761.9 402 90.5
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 3.2e-218 761.5 402 90.8
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 4.2e-218 761.1 402 91.3
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 7.1e-218 760.4 402 91.3
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 7.1e-218 760.4 402 91.5
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 7.1e-218 760.4 402 90.3
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 9.3e-218 760.0 402 90.8
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 9.3e-218 760.0 402 90.8
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 1.2e-217 759.6 402 91.3
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 1.2e-217 759.6 402 90.5
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 2.1e-217 758.8 402 91.0
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 3.5e-217 758.1 402 90.5
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 3.5e-217 758.1 402 90.5
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 4.6e-217 757.7 402 91.3
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 6.0e-217 757.3 402 89.8
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 7.9e-217 756.9 402 90.5
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 7.9e-217 756.9 402 89.8
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 7.9e-217 756.9 402 90.8
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 1.0e-216 756.5 402 90.0
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.3e-216 756.1 402 90.5
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 1.3e-216 756.1 402 90.5
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 1.3e-216 756.1 402 90.5
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 2.3e-216 755.4 402 90.0
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 5.1e-216 754.2 402 89.6
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 8.7e-216 753.4 402 89.8
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 1.9e-215 752.3 416 88.0
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 1.9e-215 752.3 402 90.5
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 3.3e-215 751.5 402 89.6
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 3.3e-215 751.5 402 89.6
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 3.3e-215 751.5 402 89.6
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 4.3e-215 751.1 402 89.3
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 4.3e-215 751.1 402 89.6
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 5.6e-215 750.7 402 89.6
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 7.4e-215 750.4 402 89.3
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 89.1
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 9.6e-215 750.0 416 87.7
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 89.3
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 2.1e-214 748.8 402 89.3
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 4.8e-214 747.7 402 88.8
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 6.2e-214 747.3 402 89.8
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 6.2e-214 747.3 402 90.0
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 6.2e-214 747.3 441 84.4
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 1.8e-213 745.7 402 89.3
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 2.4e-213 745.3 402 89.8
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 2.4e-213 745.3 402 88.6
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 2.4e-213 745.3 402 89.6
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 2.6e-212 741.9 402 87.8
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 4.5e-212 741.1 402 88.8
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 9.9e-212 740.0 402 88.8
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 1.3e-211 739.6 402 88.8
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 1.3e-211 739.6 411 86.9
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 2.9e-211 738.4 402 88.8
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 2.9e-211 738.4 438 83.3
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 3.2e-210 734.9 402 88.1
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 4.2e-210 734.6 402 86.8
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 5.5e-210 734.2 402 87.3
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 7.1e-210 733.8 417 84.9
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 7.1e-210 733.8 402 87.8
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 1.2e-209 733.0 402 87.8
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 1.2e-209 733.0 402 87.8
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 1.2e-209 733.0 402 87.8
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 1.6e-209 732.6 402 87.1
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 1.6e-209 732.6 402 87.6
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 1.6e-209 732.6 402 87.6
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 1.6e-209 732.6 402 87.3
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 2.1e-209 732.3 402 86.6
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 3.5e-209 731.5 402 87.6
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 4.6e-209 731.1 402 87.6
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 1.0e-208 729.9 402 87.3
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 1.0e-208 729.9 402 87.3
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 1.0e-208 729.9 402 86.8
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 3.0e-208 728.4 402 87.1
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 3.0e-208 728.4 402 87.1
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 3.0e-208 728.4 402 87.1
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 3.9e-208 728.0 402 87.1
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 3.9e-208 728.0 402 87.6
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 8.7e-208 726.9 400 86.8
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 8.7e-208 726.9 402 86.3
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 1.1e-207 726.5 402 85.6
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 1.1e-207 726.5 402 86.8
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 5.6e-207 724.2 401 86.8
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 5.6e-207 724.2 402 85.1
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 9.6e-207 723.4 429 82.5
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 2.8e-206 721.8 396 87.1
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 2.8e-206 721.8 402 86.1
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 3.7e-206 721.5 402 86.1
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 4.8e-206 721.1 402 86.1
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 6.2e-206 720.7 402 85.8
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 9.0e-205 716.8 402 86.1
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 3.8e-203 711.4 402 86.8
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 3.8e-203 711.4 419 84.7
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 6.5e-203 710.7 402 83.1
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 2.7e-201 705.3 402 84.1
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 1.3e-200 703.0 402 85.1
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 1.6e-198 696.0 402 84.6
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 2.1e-198 695.7 402 82.8
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 5.9e-196 687.6 357 92.2
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 1.0e-195 686.8 375 87.5
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 1.5e-191 672.9 402 80.6
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 2.5e-191 672.2 402 79.9
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 4.3e-191 671.4 402 80.6
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 6.3e-190 667.5 361 90.0
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 8.2e-190 667.2 402 79.9
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 7.7e-188 660.6 360 86.9
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 2.2e-182 642.5 402 79.6
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 1.5e-180 636.3 340 90.9
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 9.4e-178 627.1 334 90.7
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 3.6e-177 625.2 401 73.1
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 7.4e-175 617.5 402 71.6
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 4.1e-173 611.7 402 71.4
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 9.1e-173 610.5 402 76.1
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 9.4e-170 600.5 402 69.9
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 2.1e-169 599.4 403 70.5
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 3.0e-168 595.5 403 69.5
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 2.2e-163 579.3 402 69.2
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 5.0e-163 578.2 401 67.6
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.1e-157 560.5 403 66.0
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 1.6e-156 556.6 286 93.7
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 4.0e-144 515.4 403 67.2
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 1.0e-139 500.7 419 62.8
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 8.9e-136 487.6 402 63.7
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 4.0e-128 462.2 259 84.9
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 1.6e-121 440.3 394 54.1
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 1.0e-115 421.0 395 53.2
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 1.6e-113 413.7 276 74.6
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 1.2e-103 380.9 229 80.3
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 2.9e-102 376.3 219 83.1
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 1.1e-101 374.4 219 82.2
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 2.4e-101 373.2 219 81.3
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 3.0e-83 313.2 160 93.1
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 8.7e-83 311.6 300 53.7
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 7.6e-79 298.5 163 88.3
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 3.6e-52 209.9 116 85.3
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 8.3e-33 145.6 86 79.1
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 2.7e-31 140.6 351 28.8
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 3.5e-31 140.2 351 27.1
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 1.7e-17 94.7 47 91.5
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 1.1e-13 82.0 72 59.7
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 2.5e-13 80.9 45 75.6
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 1.1e-11 75.5 316 23.4
Pp3s34_170 Physcomitrium patens HOM05D000068 ORTHO05D011688 2.1e-07 61.2 355 21.1


User provided reference genes

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