Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001162 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 2.7e-258 894.8 457 100.0
CSS0009071 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 2.2e-255 885.2 457 99.1
Dinv36636 Davidia involucrata HOM05D005548 ORTHO05D007497 3.8e-199 698.4 457 80.5
Actinidia09420 Actinidia chinensis HOM05D005548 ORTHO05D007497 5.4e-198 694.5 457 79.6
Dinv41607 Davidia involucrata HOM05D005548 ORTHO05D007497 6.2e-194 681.0 462 79.0
Cfa021563 Carpinus fangiana HOM05D005548 ORTHO05D007497 1.3e-188 663.3 463 77.1
Hma1.2p1_0518F.1_g171060 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 1.8e-188 662.9 402 82.6
Nn2g11732 Nelumbo nucifera HOM05D005548 ORTHO05D007497 6.7e-188 661.0 459 74.9
Potri.018G080900 Populus trichocarpa HOM05D005548 ORTHO05D007497 1.5e-187 659.8 459 75.6
Haze_25730 Corylus avellana HOM05D005548 ORTHO05D007497 7.4e-187 657.5 463 76.9
Eucgr.C01037 Eucalyptus grandis HOM05D005548 ORTHO05D007497 7.4e-187 657.5 462 74.7
TAR383G0243 Trochodendron aralioides HOM05D005548 ORTHO05D007497 9.6e-187 657.1 458 75.1
GSVIVG01015386001 Vitis vinifera HOM05D005548 ORTHO05D007497 1.6e-186 656.4 439 77.9
Sabra18G0068100 Salix brachista HOM05D005548 ORTHO05D007497 3.7e-186 655.2 459 75.4
Nitab4.5_0005947g0010 Nicotiana tabacum HOM05D005548 ORTHO05D007497 4.8e-186 654.8 467 75.6
CAN.G1529.9 Capsicum annuum HOM05D005548 ORTHO05D007497 1.1e-185 653.7 457 75.7
Haze_25723 Corylus avellana HOM05D005548 ORTHO05D007497 1.1e-185 653.7 463 76.7
Cc06_g09710 Coffea canephora HOM05D005548 ORTHO05D007497 1.4e-185 653.3 477 74.4
MBI04_g22012_MAGBIO Magnolia biondii HOM05D005548 ORTHO05D007497 1.2e-184 650.2 460 74.6
Cpa.g.sc23.102 Carica papaya HOM05D005548 ORTHO05D007497 2.6e-184 649.0 458 75.3
Thecc.09G109700 Theobroma cacao HOM05D005548 ORTHO05D007497 1.3e-183 646.7 458 75.3
CiPaw.04G163600 Carya illinoinensis HOM05D005548 ORTHO05D007497 2.2e-183 646.0 457 75.9
Manes.03G021300 Manihot esculenta HOM05D005548 ORTHO05D007497 1.9e-182 642.9 465 74.2
QL02p085206 Quercus lobata HOM05D005548 ORTHO05D007497 4.2e-182 641.7 467 74.5
Duzib168G0181 Durio zibethinus HOM05D005548 ORTHO05D007497 5.5e-182 641.3 464 73.9
Lj7C651T8 Lonicera japonica HOM05D005548 ORTHO05D007497 7.1e-182 641.0 475 73.3
PGSC0003DMG400000312 Solanum tuberosum HOM05D005548 ORTHO05D007497 2.1e-181 639.4 461 74.6
Solyc12g007090.2 Solanum lycopersicum HOM05D005548 ORTHO05D007497 8.7e-180 634.0 461 74.2
Sopen12g003070 Solanum pennellii HOM05D005548 ORTHO05D007497 8.7e-180 634.0 461 74.0
Actinidia20374 Actinidia chinensis HOM05D005548 ORTHO05D007497 4.3e-179 631.7 358 86.9
MD02G1046200 Malus domestica HOM05D005548 ORTHO05D007497 7.4e-179 630.9 460 73.5
Prupe.7G231800 Prunus persica HOM05D005548 ORTHO05D007497 7.4e-179 630.9 460 73.7
TWI63G0439 Tripterygium wilfordii HOM05D005548 ORTHO05D007497 2.1e-178 629.4 462 72.5
Glyma.09G191000 Glycine max HOM05D005548 ORTHO05D007497 2.8e-178 629.0 460 71.5
PGR142G0895 Punica granatum HOM05D005548 ORTHO05D007497 2.8e-178 629.0 435 73.1
DCAR_010452 Daucus carota HOM05D005548 ORTHO05D007497 8.2e-178 627.5 460 71.1
arahy.Tifrunner.gnm1.ann1.HQIA7A Arachis hypogaea HOM05D005548 ORTHO05D007497 1.4e-177 626.7 464 72.0
ClCG00G004520 Citrullus lanatus HOM05D005548 ORTHO05D007497 3.1e-177 625.5 470 70.2
Atru.chr7.1357 Acer truncatum HOM05D005548 ORTHO05D007497 4.1e-177 625.2 370 84.3
Aqoxy7G01651 Aquilegia oxysepala HOM05D005548 ORTHO05D007497 4.1e-177 625.2 461 70.3
VMungo0464G1126 Vigna mungo HOM05D005548 ORTHO05D007497 5.3e-177 624.8 468 70.3
Glyma.07G085900 Glycine max HOM05D005548 ORTHO05D007497 6.9e-177 624.4 460 70.9
Lsat_1_v5_gn_8_95001 Lactuca sativa HOM05D005548 ORTHO05D007497 9.0e-177 624.0 452 72.3
HanXRQChr06g0179971 Helianthus annuus HOM05D005548 ORTHO05D007497 5.9e-176 621.3 436 74.1
Lj2g0015861 Lotus japonicus HOM05D005548 ORTHO05D007497 7.6e-176 620.9 406 75.4
Sed0013441 Sechium edule HOM05D005548 ORTHO05D007497 1.7e-175 619.8 452 71.2
EL10Ac8g18489 Beta vulgaris HOM05D005548 ORTHO05D007497 2.9e-175 619.0 457 71.1
Gohir.A07G006100 Gossypium hirsutum HOM05D005548 ORTHO05D007497 2.9e-175 619.0 456 72.6
Hund26198 Selenicereus undatus HOM05D005548 ORTHO05D007497 3.8e-175 618.6 453 72.2
MELO3C025346.2 Cucumis melo HOM05D005548 ORTHO05D007497 8.5e-175 617.5 473 69.8
Gohir.D07G005900 Gossypium hirsutum HOM05D005548 ORTHO05D007497 8.5e-175 617.5 456 72.1
Nitab4.5_0002904g0080 Nicotiana tabacum HOM05D005548 ORTHO05D007497 8.5e-175 617.5 467 73.4
THA.LOC104811114 Tarenaya hassleriana HOM05D005548 ORTHO05D007497 8.5e-175 617.5 459 71.5
Migut.K00455 Erythranthe guttata HOM05D005548 ORTHO05D007497 1.4e-174 616.7 432 73.8
Gorai.001G005500 Gossypium raimondii HOM05D005548 ORTHO05D007497 1.4e-174 616.7 456 72.1
Peaxi162Scf00546g00024 Petunia axillaris HOM05D005548 ORTHO05D007497 5.5e-174 614.8 464 72.2
COL.COLO4_34874 Corchorus olitorius HOM05D005548 ORTHO05D007497 2.1e-173 612.8 370 81.9
MSTRG.26421 Avicennia marina HOM05D005548 ORTHO05D007497 4.6e-173 611.7 430 72.6
RcHm_v2.0_Chr2g0090331 Rosa chinensis HOM05D005548 ORTHO05D007497 4.6e-173 611.7 456 71.7
CsaV3_1G024240 Cucumis sativus L. HOM05D005548 ORTHO05D007497 1.8e-172 609.8 487 67.4
SalBow1G6148 Salvia bowleyana HOM05D005548 ORTHO05D007497 3.9e-172 608.6 417 75.1
Lalb_Chr22g0352791 Lupinus albus HOM05D005548 ORTHO05D007497 5.1e-172 608.2 465 70.8
Phvul.004G163700 Phaseolus vulgaris HOM05D005548 ORTHO05D007497 1.1e-171 607.1 458 69.0
Sc18g0001240 Simmondsia chinensis HOM05D005548 ORTHO05D007497 2.5e-171 605.9 463 69.1
Lalb_Chr14g0371531 Lupinus albus HOM05D005548 ORTHO05D007497 4.3e-171 605.1 463 71.1
SGA_v2.0_scaffold307G48040 Striga asiatica HOM05D005548 ORTHO05D007497 1.1e-169 600.5 407 74.2
FAN19G0123 Fragaria x ananassa HOM05D005548 ORTHO05D007497 1.8e-169 599.7 454 70.7
PSO782G1908 Papaver somniferum HOM05D005548 ORTHO05D007497 2.4e-169 599.4 458 68.3
FvH4_1g04721 Fragaria vesca HOM05D005548 ORTHO05D007497 5.3e-169 598.2 453 70.9
Medtr6g088460 Medicago truncatula HOM05D005548 ORTHO05D007497 2.0e-168 596.3 461 68.8
Ca_03976_v3 Cicer arietinum L. HOM05D005548 ORTHO05D007497 4.5e-168 595.1 451 69.8
ECA233G4048 Erigeron canadensis HOM05D005548 ORTHO05D007497 5.9e-168 594.7 370 80.0
FAN26G0240 Fragaria x ananassa HOM05D005548 ORTHO05D007497 5.9e-168 594.7 454 70.0
ATR0315G003 Amborella trichopoda HOM05D005548 ORTHO05D007497 5.0e-167 591.7 457 69.1
MD15G1184300 Malus domestica HOM05D005548 ORTHO05D007497 5.0e-167 591.7 459 69.7
TPR.G18453 Trifolium pratense HOM05D005548 ORTHO05D007497 2.5e-166 589.3 462 68.6
PSO832G1226 Papaver somniferum HOM05D005548 ORTHO05D007497 1.2e-165 587.0 465 67.3
FAN23G0305 Fragaria x ananassa HOM05D005548 ORTHO05D007497 3.6e-165 585.5 457 69.4
AL6G31050 Arabidopsis lyrata HOM05D005548 ORTHO05D007497 2.3e-164 582.8 420 69.5
Carub.0006s1789 Capsella rubella HOM05D005548 ORTHO05D007497 2.3e-164 582.8 448 68.5
AT5G19540 Arabidopsis thaliana HOM05D005548 ORTHO05D007497 6.7e-164 581.3 461 66.6
Sp6g24840 Schrenkiella parvula HOM05D005548 ORTHO05D007497 2.6e-163 579.3 461 66.6
Aa31LG4G18070 Aethionema arabicum HOM05D005548 ORTHO05D007497 2.2e-162 576.2 463 66.7
CARHR193360 Cardamine hirsuta HOM05D005548 ORTHO05D007497 2.2e-162 576.2 453 66.4
Thhalv10013469m.g Eutrema salsugineum HOM05D005548 ORTHO05D007497 2.2e-162 576.2 444 67.6
AUR62010987 Chenopodium quinoa HOM05D005548 ORTHO05D007497 2.8e-162 575.9 369 76.2
Psat1g042920 Pisum sativum HOM05D005548 ORTHO05D007497 2.8e-162 575.9 468 67.5
unitig_899.g15439 Utricularia gibba HOM05D005548 ORTHO05D007497 6.3e-162 574.7 375 76.0
BcaB05g23389 Brassica carinata HOM05D005548 ORTHO05D007497 1.4e-161 573.5 392 71.9
vmacro20704 Vaccinium macrocarpon HOM05D005548 ORTHO05D007497 1.0e-159 567.4 459 64.3
CDE02G3701 Ceratophyllum demersum HOM05D005548 ORTHO05D007497 5.0e-159 565.1 456 64.5
A02p05630 Brassica napus HOM05D005548 ORTHO05D007497 7.9e-157 557.8 469 64.0
BraA02t05515Z Brassica rapa HOM05D005548 ORTHO05D007497 7.9e-157 557.8 469 64.0
BolC2t06964H Brassica oleracea HOM05D005548 ORTHO05D007497 2.3e-156 556.2 460 63.5
BcaC03g13685 Brassica carinata HOM05D005548 ORTHO05D007497 3.9e-156 555.4 460 63.3
BNapus_Darmor_BZH_scaffold_38p02320 Brassica napus HOM05D005548 ORTHO05D007497 3.9e-156 555.4 460 63.3
Duzib150G0071 Durio zibethinus HOM05D005548 ORTHO05D007497 5.2e-156 555.1 467 66.4
Rhsim01G0095300 Rhododendron simsii HOM05D005548 ORTHO05D007497 3.7e-154 548.9 466 61.4
Hma1.2p1_0518F.1_g171070 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 5.2e-148 528.5 305 85.6
SalBow1G2309 Salvia bowleyana HOM05D005548 ORTHO05D007497 8.5e-143 511.1 335 77.3
Zm00001eb042080 Zea mays HOM05D005548 ORTHO05D007497 8.8e-140 501.1 451 59.2
Os08g0387500 Oryza sativa ssp. japonica HOM05D005548 ORTHO05D007497 5.7e-139 498.4 391 64.5
FAN28G1005 Fragaria x ananassa HOM05D005548 ORTHO05D007497 2.8e-138 496.1 392 69.4
HPP92_019989 Vanilla planifolia HOM05D005548 ORTHO05D004628 1.0e-111 407.9 430 53.7
Pp3c17_15530 Physcomitrium patens HOM05D005548 ORTHO05D007497 2.6e-107 393.3 374 53.7
Mapoly0115s0052 Marchantia polymorpha HOM05D005548 ORTHO05D007497 1.3e-106 391.0 397 52.1
AUR62021496 Chenopodium quinoa HOM05D005548 ORTHO05D007497 2.7e-104 383.3 248 77.0
Pp3c17_15540 Physcomitrium patens HOM05D005548 ORTHO05D007497 3.5e-104 382.9 363 53.4
AagrBONN_evm.TU.Sc2ySwM_344.3922 Anthoceros agrestis HOM05D005548 ORTHO05D007497 1.7e-98 364.0 447 44.7
SMO367G0640 Selaginella moellendorffii HOM05D005548 ORTHO05D007497 1.3e-95 354.4 372 52.2
SEGI_13755 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 2.2e-90 337.0 435 44.4
Rhsim01G0096400 Rhododendron simsii HOM05D005548 ORTHO05D007497 3.3e-78 296.6 338 46.7
CBR_g3024 Chara braunii HOM05D005548 ORTHO05D007497 4.3e-78 296.2 394 45.9
SEGI_11261 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 3.1e-76 290.0 380 43.7
CSS0011769 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 9.7e-62 241.9 132 96.2
CSS0008802 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 2.7e-56 223.8 123 95.1
AUR62021498 Chenopodium quinoa HOM05D005548 ORTHO05D007497 4.8e-53 213.0 131 74.0
Ciclev10010350m.g Citrus clementina HOM05D005548 ORTHO05D007497 3.6e-48 196.8 318 42.8
Nn8g39172 Nelumbo nucifera HOM05D005548 ORTHO05D007497 5.0e-42 176.4 104 83.7
CSS0016063 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 1.3e-37 161.8 83 97.6
CSS0042262 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 6.3e-37 159.5 83 96.4
Oeu048670.1 Olea europaea HOM05D005548 ORTHO05D007497 1.4e-36 158.3 91 79.1
CSS0021555 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 1.4e-31 141.7 72 95.8
Dinv06981 Davidia involucrata HOM05D005548 ORTHO05D045157 2.6e-30 137.5 89 79.8
SEGI_35049 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 7.7e-27 125.9 259 34.0
SEGI_23308 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 2.2e-26 124.4 357 31.1
Ah.12g056490 Amaranthus hybridus HOM05D005548 ORTHO05D007497 3.8e-26 123.6 83 75.9
arahy.Tifrunner.gnm1.ann1.VN1956 Arachis hypogaea HOM05D005548 ORTHO05D007497 8.8e-23 112.5 142 54.2
MCO02G293 Micromonas commoda HOM05D005548 ORTHO05D007497 1.7e-21 108.2 377 28.6
CSS0008633 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 5.4e-20 103.2 72 76.4
SalBow1G1492 Salvia bowleyana HOM05D005548 ORTHO05D007497 1.3e-13 82.0 122 41.8
Lsat_1_v5_gn_5_96001 Lactuca sativa HOM05D005548 ORTHO05D029961 1.4e-07 62.0 97 43.3


User provided reference genes

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