Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001127 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 8.2e-168 593.6 285 100.0
CSS0033350 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 3.2e-148 528.5 285 90.9
CSS0004781 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 5.6e-108 394.8 229 86.0
CSS0040499 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 3.6e-107 392.1 239 82.4
Dinv35002 Davidia involucrata HOM05D006434 ORTHO05D008069 4.3e-100 368.6 229 78.6
vmacro05779 Vaccinium macrocarpon HOM05D006434 ORTHO05D008069 2.0e-97 359.8 223 79.4
Rhsim10G0029400 Rhododendron simsii HOM05D006434 ORTHO05D008069 5.8e-97 358.2 229 78.6
Cfa007492 Carpinus fangiana HOM05D006434 ORTHO05D008069 7.5e-97 357.8 221 80.1
Atru.chr8.2465 Acer truncatum HOM05D006434 ORTHO05D008069 1.1e-95 354.0 229 73.8
Actinidia06053 Actinidia chinensis HOM05D006434 ORTHO05D008069 1.1e-95 354.0 222 77.9
GSVIVG01032566001 Vitis vinifera HOM05D006434 ORTHO05D008069 1.4e-95 353.6 225 78.7
COL.COLO4_36989 Corchorus olitorius HOM05D006434 ORTHO05D008069 3.2e-95 352.4 217 78.8
Nn1g08819 Nelumbo nucifera HOM05D006434 ORTHO05D008069 5.4e-95 351.7 221 77.4
Gohir.A07G216800 Gossypium hirsutum HOM05D006434 ORTHO05D008069 6.0e-94 348.2 217 77.9
TAR629G3263 Trochodendron aralioides HOM05D006434 ORTHO05D008069 6.0e-94 348.2 223 76.2
Gohir.D07G223600 Gossypium hirsutum HOM05D006434 ORTHO05D008069 1.3e-93 347.1 217 77.4
Gorai.001G257900 Gossypium raimondii HOM05D006434 ORTHO05D008069 1.3e-93 347.1 217 77.4
Thecc.04G069300 Theobroma cacao HOM05D006434 ORTHO05D008069 1.3e-93 347.1 223 75.3
Ciclev10012231m.g Citrus clementina HOM05D006434 ORTHO05D008069 1.7e-93 346.7 217 77.9
Potri.001G349800 Populus trichocarpa HOM05D006434 ORTHO05D008069 6.6e-93 344.7 212 79.2
Hma1.2p1_0136F.1_g062090 Hydrangea macrophylla HOM05D006434 ORTHO05D008069 8.6e-93 344.4 221 76.5
DCAR_006717 Daucus carota HOM05D006434 ORTHO05D008069 1.5e-92 343.6 227 74.4
PGR142G2438 Punica granatum HOM05D006434 ORTHO05D008069 1.5e-92 343.6 212 77.4
Duzib264G0249 Durio zibethinus HOM05D006434 ORTHO05D008069 1.9e-92 343.2 217 77.0
CAN.G1128.11 Capsicum annuum HOM05D006434 ORTHO05D008069 3.3e-92 342.4 222 75.2
Peaxi162Scf00059g00128 Petunia axillaris HOM05D006434 ORTHO05D008069 3.3e-92 342.4 216 77.3
Solyc02g067540.3 Solanum lycopersicum HOM05D006434 ORTHO05D008069 4.3e-92 342.0 222 74.8
Sopen02g016670 Solanum pennellii HOM05D006434 ORTHO05D008069 4.3e-92 342.0 222 74.8
RcHm_v2.0_Chr2g0169691 Rosa chinensis HOM05D006434 ORTHO05D008069 9.5e-92 340.9 221 75.1
PGSC0003DMG400006900 Solanum tuberosum HOM05D006434 ORTHO05D008069 1.2e-91 340.5 222 74.3
Eucgr.I01896 Eucalyptus grandis HOM05D006434 ORTHO05D008069 2.1e-91 339.7 212 78.3
Nitab4.5_0001727g0150 Nicotiana tabacum HOM05D006434 ORTHO05D008069 2.1e-91 339.7 222 74.8
Sabra16G0229200 Salix brachista HOM05D006434 ORTHO05D008069 2.8e-91 339.3 212 77.8
FAN02G4063 Fragaria x ananassa HOM05D006434 ORTHO05D008069 3.6e-91 339.0 221 74.7
MD09G1042700 Malus domestica HOM05D006434 ORTHO05D008069 3.6e-91 339.0 218 76.1
FvH4_6g49670 Fragaria vesca HOM05D006434 ORTHO05D008069 4.7e-91 338.6 216 75.9
FAN14G5872 Fragaria x ananassa HOM05D006434 ORTHO05D008069 4.7e-91 338.6 216 75.9
FAN05G1688 Fragaria x ananassa HOM05D006434 ORTHO05D008069 1.1e-90 337.4 223 73.5
CANSAT64G2331 Cannabis sativa HOM05D006434 ORTHO05D008069 1.4e-90 337.0 215 74.4
CsaV3_5G037720 Cucumis sativus L. HOM05D006434 ORTHO05D008069 3.1e-90 335.9 222 73.4
PSO161G0076 Papaver somniferum HOM05D006434 ORTHO05D008069 4.0e-90 335.5 221 73.8
Oeu022866.3 Olea europaea HOM05D006434 ORTHO05D008069 8.9e-90 334.3 212 76.9
QL02p079411 Quercus lobata HOM05D006434 ORTHO05D008069 8.9e-90 334.3 212 77.4
TWI56G0494 Tripterygium wilfordii HOM05D006434 ORTHO05D008069 1.2e-89 334.0 211 77.3
MELO3C021484.2 Cucumis melo HOM05D006434 ORTHO05D008069 2.0e-89 333.2 219 74.0
ATR0665G567 Amborella trichopoda HOM05D006434 ORTHO05D008069 3.4e-89 332.4 215 76.7
Aqoxy3G00846 Aquilegia oxysepala HOM05D006434 ORTHO05D008069 3.4e-89 332.4 217 72.8
Lalb_Chr21g0319131 Lupinus albus HOM05D006434 ORTHO05D008069 4.4e-89 332.0 212 77.8
Sed0011674 Sechium edule HOM05D006434 ORTHO05D008069 4.4e-89 332.0 224 71.4
Glyma.13G066900 Glycine max HOM05D006434 ORTHO05D008069 1.3e-88 330.5 212 76.4
Manes.15G178000 Manihot esculenta HOM05D006434 ORTHO05D008069 1.3e-88 330.5 220 75.0
Sc10g0004040 Simmondsia chinensis HOM05D006434 ORTHO05D008069 1.7e-88 330.1 211 77.3
Cc07_g02850 Coffea canephora HOM05D006434 ORTHO05D008069 6.4e-88 328.2 218 73.9
Phvul.004G023900 Phaseolus vulgaris HOM05D006434 ORTHO05D008069 6.4e-88 328.2 212 76.4
PSO478G2838 Papaver somniferum HOM05D006434 ORTHO05D008069 1.1e-87 327.4 221 72.4
AUR62018326 Chenopodium quinoa HOM05D006434 ORTHO05D008069 2.4e-87 326.2 212 76.4
BcaC06g33735 Brassica carinata HOM05D006434 ORTHO05D008069 9.2e-87 324.3 217 74.2
Thhalv10004634m.g Eutrema salsugineum HOM05D006434 ORTHO05D008069 1.6e-86 323.6 212 75.5
Sp2g17230 Schrenkiella parvula HOM05D006434 ORTHO05D008069 1.6e-86 323.6 212 75.5
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 3.5e-86 322.4 216 72.2
Migut.H00876 Erythranthe guttata HOM05D006434 ORTHO05D008069 4.6e-86 322.0 220 74.1
Lj2g0012157 Lotus japonicus HOM05D006434 ORTHO05D008069 4.6e-86 322.0 212 75.9
THA.LOC104823923 Tarenaya hassleriana HOM05D006434 ORTHO05D008069 4.6e-86 322.0 212 74.5
VMungo0464G0451 Vigna mungo HOM05D006434 ORTHO05D008069 4.6e-86 322.0 214 75.2
A06p40510 Brassica napus HOM05D006434 ORTHO05D008069 6.0e-86 321.6 214 74.8
C07p37520 Brassica napus HOM05D006434 ORTHO05D008069 6.0e-86 321.6 214 74.8
BolC7t44265H Brassica oleracea HOM05D006434 ORTHO05D008069 6.0e-86 321.6 214 74.8
BraA06t26970Z Brassica rapa HOM05D006434 ORTHO05D008069 6.0e-86 321.6 214 74.8
Glyma.19G017500 Glycine max HOM05D006434 ORTHO05D008069 6.0e-86 321.6 210 75.2
CARHR292500 Cardamine hirsuta HOM05D006434 ORTHO05D008069 7.8e-86 321.2 212 75.0
Carub.0005s0699 Capsella rubella HOM05D006434 ORTHO05D008069 2.3e-85 319.7 212 75.0
AL5G18090 Arabidopsis lyrata HOM05D006434 ORTHO05D008069 3.0e-85 319.3 212 74.1
MSTRG.23964 Avicennia marina HOM05D006434 ORTHO05D008069 6.6e-85 318.2 216 75.0
Aa31LG2G4610 Aethionema arabicum HOM05D006434 ORTHO05D008069 9.5e-84 314.3 214 73.8
AUR62030560 Chenopodium quinoa HOM05D006434 ORTHO05D008069 1.2e-83 313.9 223 71.7
SGA_v2.0_scaffold205G41750 Striga asiatica HOM05D006434 ORTHO05D008069 4.7e-83 312.0 221 70.1
arahy.Tifrunner.gnm1.ann1.ICRE53 Arachis hypogaea HOM05D006434 ORTHO05D008069 6.2e-83 311.6 212 74.1
arahy.Tifrunner.gnm1.ann1.X2C98S Arachis hypogaea HOM05D006434 ORTHO05D008069 6.2e-83 311.6 212 74.1
Medtr6g009400 Medicago truncatula HOM05D006434 ORTHO05D008069 3.1e-82 309.3 212 74.1
HanXRQChr15g0488521 Helianthus annuus HOM05D006434 ORTHO05D008069 4.0e-82 308.9 216 69.9
unitig_744.g24344 Utricularia gibba HOM05D006434 ORTHO05D008069 4.0e-82 308.9 221 71.0
EL10Ac2g02902 Beta vulgaris HOM05D006434 ORTHO05D008069 3.4e-81 305.8 241 66.8
CDE02G1577 Ceratophyllum demersum HOM05D006434 ORTHO05D008069 3.4e-81 305.8 217 68.2
TPR.G32608 Trifolium pratense HOM05D006434 ORTHO05D008069 4.4e-81 305.4 212 72.2
CiPaw.03G032300 Carya illinoinensis HOM05D006434 ORTHO05D008069 5.8e-81 305.1 188 78.2
Lsat_1_v5_gn_4_180280 Lactuca sativa HOM05D006434 ORTHO05D008069 1.3e-80 303.9 229 66.8
Psat1g076480 Pisum sativum HOM05D006434 ORTHO05D008069 1.3e-80 303.9 212 72.6
CSS0043817 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.6e-78 297.0 199 76.4
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 4.6e-78 295.4 197 74.6
FAN09G0258 Fragaria x ananassa HOM05D006434 ORTHO05D008069 5.1e-77 292.0 197 72.6
Cpa.g.sc14.62 Carica papaya HOM05D006434 ORTHO05D008069 2.5e-76 289.7 199 74.4
Nitab4.5_0003431g0070 Nicotiana tabacum HOM05D006434 ORTHO05D008069 3.3e-76 289.3 188 75.0
Os03g0736400 Oryza sativa ssp. japonica HOM05D006434 ORTHO05D008069 2.1e-75 286.6 218 65.6
HPP92_023566 Vanilla planifolia HOM05D006434 ORTHO05D008069 2.8e-75 286.2 210 67.1
Haze_14607 Corylus avellana HOM05D006434 ORTHO05D008069 1.8e-74 283.5 189 75.1
Ca_04243_v3 Cicer arietinum L. HOM05D006434 ORTHO05D008069 1.3e-72 277.3 235 61.3
Prupe.3G275100 Prunus persica HOM05D006434 ORTHO05D008069 6.0e-70 268.5 158 81.0
SalBow1G5247 Salvia bowleyana HOM05D006434 ORTHO05D008069 3.6e-67 259.2 173 72.8
AT3G28460 Arabidopsis thaliana HOM05D006434 ORTHO05D008069 5.3e-66 255.4 187 68.4
Zm00001eb215320 Zea mays HOM05D006434 ORTHO05D008069 8.4e-64 248.1 218 58.7
AagrBONN_evm.TU.Sc2ySwM_344.3988 Anthoceros agrestis HOM05D006434 ORTHO05D008069 9.6e-60 234.6 207 58.0
Pp3c7_630 Physcomitrium patens HOM05D006434 ORTHO05D008069 3.4e-57 226.1 211 55.0
SMO171G0075 Selaginella moellendorffii HOM05D006434 ORTHO05D008069 2.5e-55 219.9 212 53.8
MBI01_g13068_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 1.1e-52 211.1 120 82.5
Lj7A404T37 Lonicera japonica HOM05D006434 ORTHO05D008069 1.9e-52 210.3 119 83.2
Mapoly0140s0031 Marchantia polymorpha HOM05D006434 ORTHO05D008069 1.1e-50 204.5 213 50.7
Hund13291 Selenicereus undatus HOM05D006434 ORTHO05D008069 2.7e-46 189.9 118 78.0
CBR_g31858 Chara braunii HOM05D006434 ORTHO05D008069 7.7e-41 171.8 211 46.4
SEGI_25544 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 1.3e-40 171.0 176 51.7
PRCOL_00006620 Prasinoderma coloniale HOM05D006434 ORTHO05D008069 1.5e-36 157.5 218 38.1
SEGI_38692 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 2.0e-36 157.1 137 57.7
Cre13.g566300 Chlamydomonas reinhardtii HOM05D006434 ORTHO05D008069 3.7e-35 152.9 216 38.0
Solyc01g057060.1 Solanum lycopersicum HOM05D006434 ORTHO05D008069 5.1e-29 132.5 95 67.4
MBI01_g13070_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 1.5e-28 131.0 103 65.0
Sopen01g021310 Solanum pennellii HOM05D006434 ORTHO05D008069 2.6e-28 130.2 86 75.6
MCO03G139 Micromonas commoda HOM05D006434 ORTHO05D008069 4.8e-27 125.9 114 50.0
TAR371G0222 Trochodendron aralioides HOM05D006434 ORTHO05D008069 5.0e-24 115.9 75 73.3
MD17G1044100 Malus domestica HOM05D006434 ORTHO05D008069 1.2e-22 111.3 60 90.0
Lsat_1_v5_gn_7_34121 Lactuca sativa HOM05D006434 ORTHO05D008069 1.3e-08 64.7 50 60.0
Lj7A404T38 Lonicera japonica HOM05D006434 ORTHO05D008069 1.2e-06 58.2 156 31.4


User provided reference genes

Program Settings