Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001120 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 3.7e-91 338.2 173 100.0
CSS0020937 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 1.4e-85 319.7 173 94.8
Rhsim04G0030600 Rhododendron simsii HOM05D005570 ORTHO05D007368 4.2e-74 281.6 173 84.4
CSS0039609 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 1.3e-72 276.6 173 85.0
Lj9C217G3 Lonicera japonica HOM05D005570 ORTHO05D007368 2.8e-70 268.9 168 81.5
Hma1.2p1_0599F.1_g187020 Hydrangea macrophylla HOM05D005570 ORTHO05D007368 8.1e-70 267.3 173 79.8
Sc21g0000460 Simmondsia chinensis HOM05D005570 ORTHO05D007368 4.0e-69 265.0 170 76.5
Actinidia07853 Actinidia chinensis HOM05D005570 ORTHO05D007368 5.3e-69 264.6 173 78.0
TWI18G0239 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 4.5e-68 261.5 169 74.6
Cfa018716 Carpinus fangiana HOM05D005570 ORTHO05D007368 9.9e-68 260.4 169 79.9
Peaxi162Scf00612g00133 Petunia axillaris HOM05D005570 ORTHO05D007368 1.7e-67 259.6 169 80.5
Ciclev10016955m.g Citrus clementina HOM05D005570 ORTHO05D007368 3.8e-67 258.5 169 75.7
Duzib213G1053 Durio zibethinus HOM05D005570 ORTHO05D007368 3.8e-67 258.5 170 75.9
Eucgr.K01395 Eucalyptus grandis HOM05D005570 ORTHO05D007368 3.8e-67 258.5 173 74.6
Haze_07109 Corylus avellana HOM05D005570 ORTHO05D007368 8.4e-67 257.3 169 79.3
COL.COLO4_17467 Corchorus olitorius HOM05D005570 ORTHO05D007368 1.4e-66 256.5 170 73.5
Thecc.07G134300 Theobroma cacao HOM05D005570 ORTHO05D007368 1.9e-66 256.1 170 74.7
Gohir.D01G037900 Gossypium hirsutum HOM05D005570 ORTHO05D007368 3.2e-66 255.4 171 75.4
Gorai.002G046300 Gossypium raimondii HOM05D005570 ORTHO05D007368 3.2e-66 255.4 171 75.4
Gohir.A01G047200 Gossypium hirsutum HOM05D005570 ORTHO05D007368 2.1e-65 252.7 171 74.9
Manes.13G060500 Manihot esculenta HOM05D005570 ORTHO05D007368 2.1e-65 252.7 162 79.6
Solyc07g042710.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 2.7e-65 252.3 158 79.7
Sopen07g023810 Solanum pennellii HOM05D005570 ORTHO05D007368 2.7e-65 252.3 158 79.7
CiPaw.01G284700 Carya illinoinensis HOM05D005570 ORTHO05D007368 6.0e-65 251.1 164 77.4
DCAR_008745 Daucus carota HOM05D005570 ORTHO05D007368 6.0e-65 251.1 166 74.7
PGR044G2338 Punica granatum HOM05D005570 ORTHO05D007368 5.1e-64 248.1 171 73.7
TAR374G1095 Trochodendron aralioides HOM05D005570 ORTHO05D007368 8.7e-64 247.3 163 76.7
Cc02_g29600 Coffea canephora HOM05D005570 ORTHO05D007368 1.5e-63 246.5 159 76.7
PGR031G1532 Punica granatum HOM05D005570 ORTHO05D007368 2.5e-63 245.7 169 74.0
AUR62019308 Chenopodium quinoa HOM05D005570 ORTHO05D007368 3.3e-63 245.4 171 74.3
ClCG06G018310 Citrullus lanatus HOM05D005570 ORTHO05D007368 4.3e-63 245.0 171 74.3
Nn4g22113 Nelumbo nucifera HOM05D005570 ORTHO05D007368 5.6e-63 244.6 168 75.0
Atru.chr6.3424 Acer truncatum HOM05D005570 ORTHO05D007368 1.3e-62 243.4 172 73.3
Prupe.5G143000 Prunus persica HOM05D005570 ORTHO05D007368 1.3e-62 243.4 159 78.6
GSVIVG01018573001 Vitis vinifera HOM05D005570 ORTHO05D007368 1.3e-62 243.4 168 70.2
Lsat_1_v5_gn_9_102501 Lactuca sativa HOM05D005570 ORTHO05D007368 1.6e-62 243.0 168 71.4
MSTRG.12255 Avicennia marina HOM05D005570 ORTHO05D007368 2.8e-62 242.3 165 73.3
CsaV3_1G000130 Cucumis sativus L. HOM05D005570 ORTHO05D007368 3.7e-62 241.9 171 72.5
Sed0027705 Sechium edule HOM05D005570 ORTHO05D007368 3.7e-62 241.9 171 72.5
Nitab4.5_0005376g0020 Nicotiana tabacum HOM05D005570 ORTHO05D007368 6.2e-62 241.1 168 72.6
HanXRQChr03g0075001 Helianthus annuus HOM05D005570 ORTHO05D007368 1.1e-61 240.4 166 71.1
Nitab4.5_0005354g0010 Nicotiana tabacum HOM05D005570 ORTHO05D007368 1.4e-61 240.0 168 71.4
Aa31LG7G6130 Aethionema arabicum HOM05D005570 ORTHO05D007368 2.4e-61 239.2 158 72.2
Carub.0003s2602 Capsella rubella HOM05D005570 ORTHO05D007368 3.1e-61 238.8 168 70.2
Potri.014G169500 Populus trichocarpa HOM05D005570 ORTHO05D007368 5.3e-61 238.0 170 73.5
AUR62000128 Chenopodium quinoa HOM05D005570 ORTHO05D007368 6.9e-61 237.7 175 71.4
QL10p000758 Quercus lobata HOM05D005570 ORTHO05D007368 9.0e-61 237.3 175 72.0
MD14G1148400 Malus domestica HOM05D005570 ORTHO05D007368 1.5e-60 236.5 163 74.8
AT2G04340 Arabidopsis thaliana HOM05D005570 ORTHO05D007368 3.4e-60 235.3 168 69.0
RcHm_v2.0_Chr7g0188821 Rosa chinensis HOM05D005570 ORTHO05D007368 4.5e-60 235.0 170 71.8
Sp3g23170 Schrenkiella parvula HOM05D005570 ORTHO05D007368 5.8e-60 234.6 168 68.5
Oeu015172.1 Olea europaea HOM05D005570 ORTHO05D007368 1.7e-59 233.0 139 84.9
AL3G42010 Arabidopsis lyrata HOM05D005570 ORTHO05D007368 2.2e-59 232.6 170 67.6
CARHR102200 Cardamine hirsuta HOM05D005570 ORTHO05D007368 2.2e-59 232.6 168 68.5
MBI14_g24038_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 2.2e-59 232.6 165 73.3
MD06G1132000 Malus domestica HOM05D005570 ORTHO05D007368 2.2e-59 232.6 163 73.6
Thhalv10002687m.g Eutrema salsugineum HOM05D005570 ORTHO05D007368 4.9e-59 231.5 168 67.9
Migut.H01280 Erythranthe guttata HOM05D005570 ORTHO05D007368 6.5e-59 231.1 165 68.5
BcaB06g26780 Brassica carinata HOM05D005570 ORTHO05D007368 1.1e-58 230.3 169 68.0
BraA07t28466Z Brassica rapa HOM05D005570 ORTHO05D007368 1.1e-58 230.3 169 68.0
A07p06720 Brassica napus HOM05D005570 ORTHO05D007368 3.2e-58 228.8 169 67.5
arahy.Tifrunner.gnm1.ann1.18Q938 Arachis hypogaea HOM05D005570 ORTHO05D007368 9.3e-58 227.3 162 68.5
C07p10300 Brassica napus HOM05D005570 ORTHO05D007368 2.1e-57 226.1 169 66.9
Sabra14G0129400 Salix brachista HOM05D005570 ORTHO05D007368 2.1e-57 226.1 165 70.9
BcaC06g35864 Brassica carinata HOM05D005570 ORTHO05D007368 2.7e-57 225.7 169 66.9
BolC7t41480H Brassica oleracea HOM05D005570 ORTHO05D007368 2.7e-57 225.7 169 66.9
arahy.Tifrunner.gnm1.ann1.66C0B7 Arachis hypogaea HOM05D005570 ORTHO05D007368 4.6e-57 224.9 154 71.4
arahy.Tifrunner.gnm1.ann1.TWVE3E Arachis hypogaea HOM05D005570 ORTHO05D007368 4.6e-57 224.9 154 71.4
FAN04G1041 Fragaria x ananassa HOM05D005570 ORTHO05D007368 6.0e-57 224.6 172 68.0
arahy.Tifrunner.gnm1.ann1.CPK3HX Arachis hypogaea HOM05D005570 ORTHO05D007368 1.0e-56 223.8 162 69.1
EL10Ac4g10242 Beta vulgaris HOM05D005570 ORTHO05D007368 1.0e-56 223.8 213 57.7
FvH4_5g09330 Fragaria vesca HOM05D005570 ORTHO05D007368 1.8e-56 223.0 167 70.1
FAN18G0853 Fragaria x ananassa HOM05D005570 ORTHO05D007368 1.8e-56 223.0 167 70.1
FAN13G2066 Fragaria x ananassa HOM05D005570 ORTHO05D007368 5.1e-56 221.5 167 69.5
vmacro09474 Vaccinium macrocarpon HOM05D005570 ORTHO05D007368 6.7e-56 221.1 154 77.9
Aqoxy2G01347 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 1.1e-55 220.3 172 68.6
Lj8A137G54 Lonicera japonica HOM05D005570 ORTHO05D007368 1.1e-55 220.3 139 79.9
Aqoxy7G00316 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 5.7e-55 218.0 171 68.4
TWI36G1338 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 2.1e-54 216.1 145 73.1
ECA240G0244 Erigeron canadensis HOM05D005570 ORTHO05D007368 2.8e-54 215.7 141 75.2
PSO063G1837 Papaver somniferum HOM05D005570 ORTHO05D007368 2.8e-54 215.7 176 64.8
PSO357G0372 Papaver somniferum HOM05D005570 ORTHO05D007368 1.1e-53 213.8 174 64.4
MELO3C026167.2 Cucumis melo HOM05D005570 ORTHO05D007368 1.8e-53 213.0 235 52.8
ATR0751G216 Amborella trichopoda HOM05D005570 ORTHO05D007368 3.1e-53 212.2 162 66.7
VMungo0251G2804 Vigna mungo HOM05D005570 ORTHO05D007368 4.1e-53 211.8 162 66.0
unitig_26.g9513 Utricularia gibba HOM05D005570 ORTHO05D007368 6.9e-53 211.1 156 65.4
Cpa.g.sc136.41 Carica papaya HOM05D005570 ORTHO05D007368 2.0e-52 209.5 143 74.8
PSO421G0324 Papaver somniferum HOM05D005570 ORTHO05D007368 2.0e-52 209.5 171 63.2
Phvul.002G100000 Phaseolus vulgaris HOM05D005570 ORTHO05D007368 2.0e-52 209.5 162 64.8
Ca_18776_v3 Cicer arietinum L. HOM05D005570 ORTHO05D007368 3.4e-52 208.8 162 65.4
PSO063G6961 Papaver somniferum HOM05D005570 ORTHO05D007368 7.6e-52 207.6 176 61.9
Glyma.07G223300 Glycine max HOM05D005570 ORTHO05D007368 2.2e-51 206.1 162 64.8
Psat7g132520 Pisum sativum HOM05D005570 ORTHO05D007368 2.9e-51 205.7 159 65.4
Lalb_Chr09g0328771 Lupinus albus HOM05D005570 ORTHO05D007368 3.8e-51 205.3 163 65.6
Lj1g0005707 Lotus japonicus HOM05D005570 ORTHO05D007368 1.4e-50 203.4 155 66.5
CANSAT01G1761 Cannabis sativa HOM05D005570 ORTHO05D007368 7.1e-50 201.1 169 66.3
HPP92_013643 Vanilla planifolia HOM05D005570 ORTHO05D007368 7.1e-50 201.1 171 58.5
TPR.G11531 Trifolium pratense HOM05D005570 ORTHO05D007368 3.5e-49 198.7 154 66.2
SGA_v2.0_scaffold96G29016 Striga asiatica HOM05D005570 ORTHO05D007368 1.3e-48 196.8 133 74.4
Ah.12g059860 Amaranthus hybridus HOM05D005570 ORTHO05D007368 2.3e-48 196.1 147 70.1
SGA_v2.0_scaffold317G48443 Striga asiatica HOM05D005570 ORTHO05D007368 4.3e-47 191.8 169 60.9
Medtr4g083580 Medicago truncatula HOM05D005570 ORTHO05D007368 2.8e-46 189.1 155 61.9
CDE10G0507 Ceratophyllum demersum HOM05D005570 ORTHO05D007368 4.5e-44 181.8 144 65.3
SGA_v2.0_scaffold317G48460 Striga asiatica HOM05D005570 ORTHO05D007368 1.3e-43 180.3 134 70.1
MBI14_g13534_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 2.2e-43 179.5 109 82.6
TPR.G34081 Trifolium pratense HOM05D005570 ORTHO05D007368 3.2e-42 175.6 151 60.3
PSO421G0119 Papaver somniferum HOM05D005570 ORTHO05D007368 2.7e-41 172.6 145 64.1
Zm00001eb101470 Zea mays HOM05D005570 ORTHO05D007368 7.9e-41 171.0 159 54.1
Os09g0478400 Oryza sativa ssp. japonica HOM05D005570 ORTHO05D007368 1.0e-40 170.6 149 57.0
SEGI_08222 Sequoiadendron giganteum HOM05D005570 ORTHO05D007368 6.9e-37 157.9 142 59.9
Rhsim04G0030300 Rhododendron simsii HOM05D005570 ORTHO05D007368 9.1e-37 157.5 90 84.4
Hund21535 Selenicereus undatus HOM05D005570 ORTHO05D007368 2.2e-35 152.9 87 82.8
SGA_v2.0_scaffold28G12060 Striga asiatica HOM05D005570 ORTHO05D007368 2.2e-35 152.9 111 70.3
Rhsim04G0030400 Rhododendron simsii HOM05D005570 ORTHO05D007368 3.2e-34 149.1 83 85.5
Lsat_1_v5_gn_4_24381 Lactuca sativa HOM05D005570 ORTHO05D007368 4.7e-33 145.2 100 72.0
SGA_v2.0_scaffold2G00813 Striga asiatica HOM05D005570 ORTHO05D007368 2.3e-32 142.9 138 60.9
SGA_v2.0_scaffold323G48653 Striga asiatica HOM05D005570 ORTHO05D007368 5.7e-31 138.3 116 63.8
Gohir.D01G037901 Gossypium hirsutum HOM05D005570 ORTHO05D007368 8.5e-27 124.4 81 75.3
Mapoly0084s0063 Marchantia polymorpha HOM05D005570 ORTHO05D007368 1.6e-25 120.2 142 45.8
Pp3c22_13450 Physcomitrium patens HOM05D005570 ORTHO05D007368 8.8e-24 114.4 130 47.7
Solyc07g045260.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 1.5e-23 113.6 63 84.1
Glyma.20G022600 Glycine max HOM05D005570 ORTHO05D007368 5.3e-21 105.1 113 54.0
Oeu031101.2 Olea europaea HOM05D005570 ORTHO05D007368 7.0e-21 104.8 54 90.7
Potri.001G241100 Populus trichocarpa HOM05D005570 ORTHO05D007368 2.0e-20 103.2 83 68.7
Hund30621 Selenicereus undatus HOM05D005570 ORTHO05D007368 2.9e-19 99.4 70 74.3
Hund30622 Selenicereus undatus HOM05D005570 ORTHO05D007368 2.9e-19 99.4 70 74.3
Potri.014G169750 Populus trichocarpa HOM05D005570 ORTHO05D007368 1.6e-17 93.6 51 88.2
SGA_v2.0_scaffold317G48459 Striga asiatica HOM05D005570 ORTHO05D007368 1.8e-16 90.1 60 71.7
Lsat_1_v5_gn_4_72161 Lactuca sativa HOM05D005570 ORTHO05D007368 1.2e-15 87.4 53 75.5
Potri.001G240904 Populus trichocarpa HOM05D005570 ORTHO05D007368 1.6e-12 77.0 53 71.7
CBR_g57071 Chara braunii HOM05D001740 ORTHO05D001468 8.5e-11 71.2 85 34.1
AUR62027077 Chenopodium quinoa HOM05D005570 ORTHO05D007368 2.8e-06 56.2 56 55.4


User provided reference genes

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