Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001117 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 5.7e-173 610.9 327 100.0
CSS0043370 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 3.3e-157 558.5 330 93.0
CSS0028855 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 7.7e-154 547.4 330 91.5
Actinidia03489 Actinidia chinensis HOM05D005724 ORTHO05D006636 3.1e-118 429.1 333 74.8
vmacro00813 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 1.3e-100 370.5 330 67.0
Hma1.2p1_0023F.1_g015530 Hydrangea macrophylla HOM05D005724 ORTHO05D006636 1.0e-97 360.9 333 64.0
RhsimUnG0095000 Rhododendron simsii HOM05D005724 ORTHO05D006636 3.3e-96 355.9 332 66.3
Dinv40379 Davidia involucrata HOM05D005724 ORTHO05D006636 4.0e-94 349.0 343 61.8
Oeu040430.1 Olea europaea HOM05D005724 ORTHO05D006636 4.4e-93 345.5 325 61.5
TAR623G1038 Trochodendron aralioides HOM05D005724 ORTHO05D006636 3.4e-85 319.3 337 60.5
Cc10_g09550 Coffea canephora HOM05D005724 ORTHO05D006636 2.4e-83 313.2 333 58.3
TAR369G1103 Trochodendron aralioides HOM05D005724 ORTHO05D006636 1.6e-82 310.5 337 58.2
CiPaw.07G081600 Carya illinoinensis HOM05D005724 ORTHO05D006636 1.6e-79 300.4 332 56.9
Aqoxy1G00698 Aquilegia oxysepala HOM05D005724 ORTHO05D006636 2.1e-79 300.1 336 56.8
TWI12G1283 Tripterygium wilfordii HOM05D005724 ORTHO05D006636 8.1e-79 298.1 347 54.5
DCAR_014109 Daucus carota HOM05D005724 ORTHO05D006636 5.4e-75 285.4 330 56.1
Atru.chr12.1744 Acer truncatum HOM05D005724 ORTHO05D006636 1.6e-74 283.9 367 53.1
vmacro22819 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 2.7e-74 283.1 330 55.5
SGA_v2.0_scaffold52G18986 Striga asiatica HOM05D005724 ORTHO05D006636 1.3e-73 280.8 308 55.8
SalBow2G0175 Salvia bowleyana HOM05D005724 ORTHO05D006636 3.0e-73 279.6 312 54.8
MSTRG.1463 Avicennia marina HOM05D005724 ORTHO05D006636 6.7e-73 278.5 310 56.8
Lj2C388T1 Lonicera japonica HOM05D005724 ORTHO05D006636 7.4e-72 275.0 316 55.1
Ciclev10011241m.g Citrus clementina HOM05D005724 ORTHO05D006636 9.6e-72 274.6 350 52.9
MBI13_g30854_MAGBIO Magnolia biondii HOM05D005724 ORTHO05D006636 2.1e-71 273.5 363 50.4
VMungo0540G1901 Vigna mungo HOM05D005724 ORTHO05D006636 5.3e-70 268.9 340 52.9
Peaxi162Scf00691g00055 Petunia axillaris HOM05D005724 ORTHO05D006636 1.2e-69 267.7 371 47.4
Nitab4.5_0003319g0010 Nicotiana tabacum HOM05D005724 ORTHO05D006636 4.5e-69 265.8 312 53.5
Sc16g0010460 Simmondsia chinensis HOM05D005724 ORTHO05D006636 4.5e-69 265.8 339 53.4
Migut.C01153 Erythranthe guttata HOM05D005724 ORTHO05D006636 5.8e-69 265.4 337 54.3
Nitab4.5_0000193g0130 Nicotiana tabacum HOM05D005724 ORTHO05D006636 5.8e-69 265.4 312 53.5
CAN.G219.49 Capsicum annuum HOM05D005724 ORTHO05D006636 1.3e-68 264.2 337 52.8
unitig_46.g18493 Utricularia gibba HOM05D005724 ORTHO05D006636 1.3e-68 264.2 309 54.4
Lsat_1_v5_gn_4_15540 Lactuca sativa HOM05D005724 ORTHO05D006636 1.7e-68 263.8 326 51.5
Manes.13G004400 Manihot esculenta HOM05D005724 ORTHO05D006636 2.5e-67 260.0 358 49.4
Cfa006250 Carpinus fangiana HOM05D005724 ORTHO05D006636 6.7e-65 251.9 326 51.5
ClCG09G009940 Citrullus lanatus HOM05D005724 ORTHO05D006636 1.1e-64 251.1 307 51.1
PGR031G2108 Punica granatum HOM05D005724 ORTHO05D006636 1.5e-64 250.8 375 48.8
HanXRQChr16g0529541 Helianthus annuus HOM05D005724 ORTHO05D006636 1.9e-64 250.4 312 51.3
CsaV3_4G029120 Cucumis sativus L. HOM05D005724 ORTHO05D006636 7.4e-64 248.4 311 50.8
QL10p055615 Quercus lobata HOM05D005724 ORTHO05D006636 9.6e-64 248.1 342 50.3
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 1.3e-63 247.7 311 51.4
Glyma.15G131100 Glycine max HOM05D005724 ORTHO05D006636 3.7e-63 246.1 335 50.4
Haze_04583 Corylus avellana HOM05D005724 ORTHO05D006636 4.8e-63 245.7 357 48.5
MELO3C000397.2 Cucumis melo HOM05D005724 ORTHO05D006636 6.2e-63 245.4 312 51.6
Lj6g0014403 Lotus japonicus HOM05D005724 ORTHO05D006636 1.1e-62 244.6 337 49.6
ATR0307G120 Amborella trichopoda HOM05D005724 ORTHO05D006636 1.8e-62 243.8 338 48.5
Glyma.09G025000 Glycine max HOM05D005724 ORTHO05D006636 1.8e-62 243.8 335 50.1
Lalb_Chr18g0058031 Lupinus albus HOM05D005724 ORTHO05D006636 1.8e-62 243.8 338 50.9
QL10p055704 Quercus lobata HOM05D005724 ORTHO05D006636 2.4e-62 243.4 347 49.3
Prupe.6G362700 Prunus persica HOM05D005724 ORTHO05D006636 2.0e-61 240.4 334 50.6
QL03p046485 Quercus lobata HOM05D005724 ORTHO05D006636 4.5e-61 239.2 345 49.6
Sed0018672 Sechium edule HOM05D005724 ORTHO05D006636 5.0e-60 235.7 337 46.6
ECA234G3960 Erigeron canadensis HOM05D005724 ORTHO05D006636 3.2e-59 233.0 356 45.8
Eucgr.H01410 Eucalyptus grandis HOM05D005724 ORTHO05D006636 3.2e-59 233.0 338 48.2
arahy.Tifrunner.gnm1.ann1.GIZW0B Arachis hypogaea HOM05D005724 ORTHO05D006636 7.1e-59 231.9 342 48.0
Ah.06g195410 Amaranthus hybridus HOM05D005724 ORTHO05D006636 9.3e-59 231.5 312 52.6
MD12G1263700 Malus domestica HOM05D005724 ORTHO05D006636 2.1e-58 230.3 351 46.2
arahy.Tifrunner.gnm1.ann1.EBNE7V Arachis hypogaea HOM05D005724 ORTHO05D006636 3.5e-58 229.6 341 48.1
RcHm_v2.0_Chr3g0447651 Rosa chinensis HOM05D005724 ORTHO05D006636 3.5e-58 229.6 352 46.3
PSO541G5859 Papaver somniferum HOM05D005724 ORTHO05D006636 1.0e-57 228.0 337 47.5
FvH4_6g00350 Fragaria vesca HOM05D005724 ORTHO05D006636 1.1e-56 224.6 330 46.4
Potri.001G125200 Populus trichocarpa HOM05D005724 ORTHO05D006636 1.1e-56 224.6 323 49.2
Psat0s1379g0200 Pisum sativum HOM05D005724 ORTHO05D006636 4.3e-56 222.6 286 50.7
AUR62029295 Chenopodium quinoa HOM05D005724 ORTHO05D006636 1.3e-55 221.1 314 49.7
Dinv27343 Davidia involucrata HOM05D005724 ORTHO05D006636 1.3e-55 221.1 181 67.4
AUR62041171 Chenopodium quinoa HOM05D005724 ORTHO05D006636 2.2e-55 220.3 314 49.4
Sopen07g032510 Solanum pennellii HOM05D005724 ORTHO05D006636 3.7e-55 219.5 308 48.4
Phvul.006G127600 Phaseolus vulgaris HOM05D005724 ORTHO05D006636 4.8e-55 219.2 356 45.5
Sabra01G0096300 Salix brachista HOM05D005724 ORTHO05D006636 6.3e-55 218.8 321 48.6
Nitab4.5_0005621g0050 Nicotiana tabacum HOM05D005724 ORTHO05D006636 8.2e-55 218.4 333 48.3
Solyc07g064350.3 Solanum lycopersicum HOM05D005724 ORTHO05D006636 2.4e-54 216.9 308 48.1
Thecc.05G190100 Theobroma cacao HOM05D005724 ORTHO05D006636 2.0e-53 213.8 364 44.0
CANSAT35G0128 Cannabis sativa HOM05D005724 ORTHO05D006636 4.5e-53 212.6 312 46.5
Ca_00849_v3 Cicer arietinum L. HOM05D005724 ORTHO05D006636 4.5e-53 212.6 265 51.7
PGSC0003DMG400013918 Solanum tuberosum HOM05D005724 ORTHO05D006636 4.5e-53 212.6 308 48.1
PSO133G0013 Papaver somniferum HOM05D005724 ORTHO05D006636 2.9e-52 209.9 329 46.2
COL.COLO4_36609 Corchorus olitorius HOM05D005724 ORTHO05D006636 7.2e-51 205.3 327 45.0
Nn2g11375 Nelumbo nucifera HOM05D005724 ORTHO05D006636 3.6e-50 203.0 219 58.0
Duzib168G0454 Durio zibethinus HOM05D005724 ORTHO05D006636 6.1e-50 202.2 355 43.7
Nitab4.5_0001290g0080 Nicotiana tabacum HOM05D005724 ORTHO05D006636 6.7e-49 198.7 290 47.6
Medtr2g030390 Medicago truncatula HOM05D005724 ORTHO05D006636 2.0e-48 197.2 351 42.7
TPR.G26364 Trifolium pratense HOM05D005724 ORTHO05D006636 7.4e-48 195.3 304 44.7
Carub.0003s2445 Capsella rubella HOM05D005724 ORTHO05D006636 9.7e-48 194.9 305 45.9
CDE09G0189 Ceratophyllum demersum HOM05D005724 ORTHO05D006636 9.7e-48 194.9 300 45.3
Os05g0490000 Oryza sativa ssp. japonica HOM05D005724 ORTHO05D006636 1.7e-47 194.1 216 55.6
Sp3g21860 Schrenkiella parvula HOM05D005724 ORTHO05D006636 6.9e-46 188.7 298 46.0
Gohir.D08G247200 Gossypium hirsutum HOM05D005724 ORTHO05D006636 5.9e-45 185.7 361 41.3
BolC7t41765H Brassica oleracea HOM05D005724 ORTHO05D006636 5.0e-44 182.6 306 44.1
SEGI_23235 Sequoiadendron giganteum HOM05D005724 ORTHO05D006636 5.0e-44 182.6 359 39.8
Gorai.004G263700 Gossypium raimondii HOM05D005724 ORTHO05D006636 2.5e-43 180.3 352 41.2
Oeu026139.1 Olea europaea HOM05D005724 ORTHO05D006636 7.2e-43 178.7 195 56.9
THA.LOC104821618 Tarenaya hassleriana HOM05D005724 ORTHO05D006636 9.4e-43 178.3 259 45.2
Zm00001eb227770 Zea mays HOM05D005724 ORTHO05D006636 9.4e-43 178.3 302 42.7
BcaC06g35627 Brassica carinata HOM05D005724 ORTHO05D006636 6.1e-42 175.6 306 43.5
C07p12790 Brassica napus HOM05D005724 ORTHO05D006636 6.1e-42 175.6 306 43.1
AagrBONN_evm.TU.Sc2ySwM_228.2542 Anthoceros agrestis HOM05D005724 ORTHO05D006636 7.9e-42 175.3 333 41.7
Glyma.13G144202 Glycine max HOM05D005724 ORTHO05D006636 1.0e-41 174.9 274 44.9
AL8G20560 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 1.8e-41 174.1 330 41.2
AT3G24080 Arabidopsis thaliana HOM05D005724 ORTHO05D006636 6.7e-41 172.2 319 41.4
A07p08250 Brassica napus HOM05D005724 ORTHO05D006636 1.1e-40 171.4 307 42.3
BcaB06g26592 Brassica carinata HOM05D005724 ORTHO05D006636 1.5e-40 171.0 321 41.7
BraA07t28608Z Brassica rapa HOM05D005724 ORTHO05D006636 1.5e-40 171.0 311 42.1
AL3G39270 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 5.7e-40 169.1 306 42.5
Aa31LG8G10800 Aethionema arabicum HOM05D005724 ORTHO05D006636 2.8e-39 166.8 243 49.0
Nitab4.5_0013479g0020 Nicotiana tabacum HOM05D005724 ORTHO05D006636 6.3e-39 165.6 239 46.4
CARHR100150 Cardamine hirsuta HOM05D005724 ORTHO05D006636 3.1e-38 163.3 253 45.5
Mapoly0032s0003 Marchantia polymorpha HOM05D005724 ORTHO05D006636 3.1e-38 163.3 327 39.8
Gohir.A08G226800 Gossypium hirsutum HOM05D005724 ORTHO05D006636 7.0e-38 162.2 362 38.4
Mapoly0029s0120 Marchantia polymorpha HOM05D005724 ORTHO05D006636 9.1e-38 161.8 330 39.7
Pp3c2_10220 Physcomitrium patens HOM05D005724 ORTHO05D006636 1.7e-36 157.5 320 39.7
SHI13708 Sapria himalayana HOM05D005724 ORTHO05D006636 1.7e-28 131.0 328 37.2
MD04G1246400 Malus domestica HOM05D005724 ORTHO05D006636 2.7e-26 123.6 138 57.2
HPP92_010851 Vanilla planifolia HOM05D005724 ORTHO05D006636 1.7e-20 104.4 154 47.4
Peaxi162Scf00916g00131 Petunia axillaris HOM05D005724 ORTHO05D006636 1.9e-19 100.9 160 44.4
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.5e-19 100.5 148 48.6
AL8G20410 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 3.2e-19 100.1 152 45.4
PRCOL_00003643 Prasinoderma coloniale HOM05D005724 ORTHO05D006636 5.2e-17 92.8 255 34.1
SMO118G0180 Selaginella moellendorffii HOM05D005724 ORTHO05D006636 1.5e-16 91.3 193 35.8
MD04G1246500 Malus domestica HOM05D005724 ORTHO05D006636 4.4e-16 89.7 133 48.9
Cre10.g441450 Chlamydomonas reinhardtii HOM05D005724 ORTHO05D006636 5.4e-14 82.8 231 34.2
MCO14G354 Micromonas commoda HOM05D005724 ORTHO05D006636 1.9e-11 74.3 246 32.9
Psat1g166960 Pisum sativum HOM05D005724 ORTHO05D006636 2.1e-10 70.9 58 67.2
AagrBONN_evm.TU.Sc2ySwM_344.5238 Anthoceros agrestis HOM05D005724 ORTHO05D006636 2.2e-07 60.8 215 31.2
CBR_g46717 Chara braunii HOM05D005724 ORTHO05D006636 6.4e-07 59.3 335 26.0


User provided reference genes

Program Settings