Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 2534.2 1529 100.0
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 2013.4 1549 72.9
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1734.2 1562 62.7
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 1729.5 1528 66.0
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 0.0e+00 1655.2 1552 64.3
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 1535.0 1562 57.4
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 1490.3 1537 60.2
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 0.0e+00 1488.8 1544 59.3
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 0.0e+00 1436.8 1597 54.2
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 0.0e+00 1422.5 1524 55.0
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1392.1 1499 61.2
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 0.0e+00 1386.3 1532 57.3
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 0.0e+00 1383.2 1534 55.0
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 0.0e+00 1382.9 1525 54.7
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 0.0e+00 1381.7 1518 55.5
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 0.0e+00 1377.5 1529 52.5
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 0.0e+00 1372.5 1533 55.5
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 0.0e+00 1372.5 1593 53.5
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 0.0e+00 1344.7 1547 53.3
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 0.0e+00 1342.4 1525 57.2
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 0.0e+00 1337.4 1524 53.1
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 0.0e+00 1330.1 1529 52.6
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 0.0e+00 1318.9 1532 51.7
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1310.4 1546 52.1
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 0.0e+00 1297.0 1601 50.3
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1290.0 1544 52.1
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1288.5 1544 52.1
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1287.3 1562 53.1
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 0.0e+00 1268.8 1548 51.6
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1258.0 1566 48.6
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 0.0e+00 1254.2 1541 49.3
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 0.0e+00 1253.8 1527 51.4
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1251.5 1568 54.4
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 0.0e+00 1251.1 1527 50.8
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 0.0e+00 1248.8 1531 51.5
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1248.4 1541 49.3
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1247.6 1317 60.5
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 0.0e+00 1235.3 1520 48.8
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 0.0e+00 1225.7 1523 49.5
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 0.0e+00 1223.4 1559 49.9
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 0.0e+00 1223.0 1536 49.0
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 0.0e+00 1221.5 1573 48.4
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 0.0e+00 1221.5 1542 50.6
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1219.1 1533 47.0
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1217.2 1534 46.9
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 0.0e+00 1216.8 1544 51.6
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 0.0e+00 1215.7 1545 48.0
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 0.0e+00 1213.0 1553 47.9
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 0.0e+00 1212.6 1598 50.1
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 0.0e+00 1211.4 1556 55.1
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 0.0e+00 1210.7 1558 51.0
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 0.0e+00 1201.8 1521 47.3
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 0.0e+00 1200.3 1542 54.5
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1179.9 1807 43.2
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1169.5 1585 49.6
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1167.9 1553 50.5
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1164.8 1552 49.9
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1164.8 1550 49.6
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 0.0e+00 1158.7 1575 45.8
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 0.0e+00 1156.7 923 64.7
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 0.0e+00 1156.0 1531 47.5
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 0.0e+00 1152.9 1535 47.4
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1151.0 1537 47.2
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 0.0e+00 1141.7 1535 54.2
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 0.0e+00 1137.1 1534 46.9
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1136.7 1563 46.4
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1135.9 1540 46.4
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1135.2 1535 52.2
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 0.0e+00 1130.5 1621 45.8
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 0.0e+00 1129.4 1554 46.3
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1109.4 1532 47.7
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 0.0e+00 1099.3 1528 47.4
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 0.0e+00 1088.6 1552 47.0
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 0.0e+00 1083.2 1559 47.0
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 0.0e+00 1082.8 952 59.5
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 0.0e+00 1078.5 962 60.5
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 7.9e-310 1067.8 1528 51.5
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 1.3e-307 1060.4 1530 44.9
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 2.4e-306 1056.2 1538 45.4
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 2.4e-306 1056.2 1553 47.3
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 3.9e-301 1038.9 1620 46.0
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 5.1e-301 1038.5 1613 42.5
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 1.3e-299 1033.9 949 59.0
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 1.4e-290 1003.8 1578 42.8
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 2.6e-289 999.6 1524 44.8
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 2.9e-288 996.1 1525 42.0
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 6.5e-288 995.0 1534 42.1
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 4.5e-281 972.2 767 67.0
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 8.3e-275 951.4 1377 45.3
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 1.1e-247 861.3 1586 39.8
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 1.9e-239 833.9 2352 33.7
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 1.0e-232 811.6 1535 40.4
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 5.1e-232 809.3 801 56.4
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 1.8e-205 721.1 1317 37.2
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 5.3e-197 693.0 1523 33.7
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.9e-194 684.5 564 67.4
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 1.4e-189 668.3 543 64.3
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 1.1e-178 632.1 1518 35.2
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 5.2e-176 623.2 766 47.0
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 4.1e-173 613.6 1606 31.0
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 9.1e-173 612.5 974 43.0
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.0e-168 599.0 874 41.4
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 3.0e-160 570.9 1182 44.3
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 8.3e-142 509.6 415 65.8
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 4.1e-141 507.3 1498 28.6
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 1.3e-126 459.1 343 74.1
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 1.1e-112 412.9 1568 37.2
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 5.6e-106 390.6 527 42.5
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 7.3e-106 390.2 1507 28.0
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 8.1e-105 386.7 344 65.1
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 3.1e-104 384.8 312 65.1
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 1.2e-100 372.9 927 32.3
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 3.0e-99 368.2 331 64.0
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 2.4e-96 358.6 239 82.4
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 1.5e-90 339.3 349 53.9
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 1.5e-87 329.3 1548 29.0
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.2e-85 321.6 290 55.5
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 1.9e-69 269.2 417 42.7
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 1.0e-59 236.9 154 79.9
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 2.0e-50 206.1 239 55.2
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.2e-49 202.6 267 46.1
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 6.5e-46 191.0 152 69.1
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.8e-43 183.0 231 44.6
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.8e-43 183.0 231 44.6
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 3.0e-43 182.2 129 74.4
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-41 176.4 672 25.6
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 1.8e-35 156.4 154 58.4
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.2e-34 153.7 420 31.4
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 4.5e-31 141.7 412 28.6
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 1.5e-26 126.7 99 63.6
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 2.2e-25 122.9 361 28.3
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.2e-23 117.1 435 28.3
vmacro07283 Vaccinium macrocarpon HOM05D000340 ORTHO05D012132 3.9e-22 112.1 92 64.1
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 5.0e-22 111.7 102 56.9
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 5.0e-22 111.7 181 39.8
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 8.0e-20 104.4 71 70.4
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 3.2e-16 92.4 263 29.7
Os07g0517400 Oryza sativa ssp. japonica HOM05D005165 ORTHO05D006361 3.5e-15 89.0 116 41.4
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 2.5e-13 82.8 96 54.2
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 2.9e-09 69.3 90 47.8
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 1.4e-08 67.0 231 28.1
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 1.9e-08 66.6 57 59.6
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 2.4e-08 66.2 68 51.5
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 5.4e-08 65.1 53 60.4


User provided reference genes

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