Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001047 Camellia sinensis var. sinensis HOM05D045153 ORTHO05D113032 5.4e-40 167.2 82 100.0
CSS0023555 Camellia sinensis var. sinensis HOM05D000230 ORTHO05D000176 1.8e-22 109.0 102 59.8
CSS0036985 Camellia sinensis var. sinensis HOM05D045153 ORTHO05D109216 7.4e-21 103.6 82 68.3
CSS0000257 Camellia sinensis var. sinensis HOM05D000230 ORTHO05D000176 1.6e-12 75.9 84 53.6
SGA_v2.0_scaffold181G39808 Striga asiatica HOM05D000230 ORTHO05D000176 1.6e-12 75.9 98 45.9
Actinidia12621 Actinidia chinensis HOM05D000230 ORTHO05D000176 2.8e-12 75.1 104 43.3
Nitab4.5_0006409g0030 Nicotiana tabacum HOM05D000230 ORTHO05D000176 4.8e-12 74.3 104 43.3
Peaxi162Scf00111g01136 Petunia axillaris HOM05D000230 ORTHO05D000176 1.8e-11 72.4 104 43.3
Cc05_g10430 Coffea canephora HOM05D000230 ORTHO05D000176 2.4e-11 72.0 100 46.0
Nitab4.5_0005492g0080 Nicotiana tabacum HOM05D000230 ORTHO05D000176 4.0e-11 71.2 104 42.3
DCAR_013785 Daucus carota HOM05D000230 ORTHO05D000176 5.3e-11 70.9 41 70.7
vmacro09427 Vaccinium macrocarpon HOM05D000230 ORTHO05D000176 5.3e-11 70.9 104 41.3
Solyc07g061920.4 Solanum lycopersicum HOM05D000230 ORTHO05D000176 6.9e-11 70.5 103 41.7
Sopen07g030200 Solanum pennellii HOM05D000230 ORTHO05D000176 6.9e-11 70.5 103 41.7
PGSC0003DMG401007052 Solanum tuberosum HOM05D000230 ORTHO05D000176 6.9e-11 70.5 102 41.2
Migut.M00623 Erythranthe guttata HOM05D000230 ORTHO05D000176 1.2e-10 69.7 98 42.9
CAN.G375.77 Capsicum annuum HOM05D000230 ORTHO05D000176 2.6e-10 68.6 104 39.4
Sc03g0010970 Simmondsia chinensis HOM05D000230 ORTHO05D000176 2.6e-10 68.6 45 68.9
Dinv13326 Davidia involucrata HOM05D000230 ORTHO05D000176 4.5e-10 67.8 106 45.3
MSTRG.6726 Avicennia marina HOM05D000230 ORTHO05D000176 1.7e-09 65.9 41 68.3
RhsimUnG0205500 Rhododendron simsii HOM05D000230 ORTHO05D000176 1.7e-09 65.9 112 37.5
Hund02323 Selenicereus undatus HOM05D000230 ORTHO05D000176 2.9e-09 65.1 105 40.0
HanXRQChr12g0373541 Helianthus annuus HOM05D000230 ORTHO05D000176 3.8e-09 64.7 101 37.6
arahy.Tifrunner.gnm1.ann1.01M4JQ Arachis hypogaea HOM05D000230 ORTHO05D000176 1.9e-08 62.4 102 39.2
arahy.Tifrunner.gnm1.ann1.19CA3D Arachis hypogaea HOM05D000230 ORTHO05D000176 1.9e-08 62.4 102 39.2
Lalb_Chr20g0109011 Lupinus albus HOM05D000230 ORTHO05D000176 2.5e-08 62.0 106 37.7
Glyma.15G245800 Glycine max HOM05D000230 ORTHO05D000176 5.5e-08 60.8 45 62.2
Psat1g009120 Pisum sativum HOM05D000230 ORTHO05D000176 5.5e-08 60.8 45 60.0
Ca_03401_v3 Cicer arietinum L. HOM05D000230 ORTHO05D000176 7.1e-08 60.5 45 60.0
Glyma.13G261000 Glycine max HOM05D000230 ORTHO05D000176 7.1e-08 60.5 45 60.0
Lj3g0012053 Lotus japonicus HOM05D000230 ORTHO05D000176 7.1e-08 60.5 45 60.0
VMungo1080G1026 Vigna mungo HOM05D000230 ORTHO05D000176 7.1e-08 60.5 45 60.0
Medtr2g072160 Medicago truncatula HOM05D000230 ORTHO05D000176 9.3e-08 60.1 45 57.8
TPR.G29680 Trifolium pratense HOM05D000230 ORTHO05D000176 9.3e-08 60.1 45 57.8
Aqoxy4G00278 Aquilegia oxysepala HOM05D000230 ORTHO05D000176 1.2e-07 59.7 99 37.4
AUR62019710 Chenopodium quinoa HOM05D000230 ORTHO05D000176 1.2e-07 59.7 106 37.7
ECA234G2493 Erigeron canadensis HOM05D000230 ORTHO05D000176 2.1e-07 58.9 41 58.5
Prupe.4G152000 Prunus persica HOM05D000230 ORTHO05D000176 2.1e-07 58.9 107 34.6
Phvul.005G062500 Phaseolus vulgaris HOM05D000230 ORTHO05D000176 2.7e-07 58.5 45 57.8
CANSAT56G0702 Cannabis sativa HOM05D000230 ORTHO05D000176 3.5e-07 58.2 41 58.5
Duzib213G0695 Durio zibethinus HOM05D000230 ORTHO05D000176 4.6e-07 57.8 41 61.0
Manes.15G100800 Manihot esculenta HOM05D000230 ORTHO05D000176 6.1e-07 57.4 106 36.8
Thecc.07G142400 Theobroma cacao HOM05D000230 ORTHO05D000176 7.9e-07 57.0 41 61.0
FvH4_3g16960 Fragaria vesca HOM05D000230 ORTHO05D000176 1.0e-06 56.6 107 33.6
FAN11G0828 Fragaria x ananassa HOM05D000230 ORTHO05D000176 1.0e-06 56.6 107 33.6
FAN16G1732 Fragaria x ananassa HOM05D000230 ORTHO05D000176 1.0e-06 56.6 107 33.6
Lsat_1_v5_gn_5_126020 Lactuca sativa HOM05D000230 ORTHO05D000176 1.0e-06 56.6 98 37.8
unitig_22.g6214 Utricularia gibba HOM05D000230 ORTHO05D000176 1.0e-06 56.6 67 47.8
EL10Ac4g08468 Beta vulgaris HOM05D000230 ORTHO05D000176 1.8e-06 55.8 105 36.2
COL.COLO4_17435 Corchorus olitorius HOM05D000230 ORTHO05D000176 1.8e-06 55.8 41 61.0
MD11G1276200 Malus domestica HOM05D000230 ORTHO05D000176 3.0e-06 55.1 41 51.2
Cpa.g.sc714.1 Carica papaya HOM05D000230 ORTHO05D000176 6.7e-06 53.9 106 34.9
RcHm_v2.0_Chr5g0028271 Rosa chinensis HOM05D000230 ORTHO05D000176 6.7e-06 53.9 41 53.7
BcaB06g25374 Brassica carinata HOM05D000230 ORTHO05D000176 8.7e-06 53.5 45 53.3
BcaC05g29060 Brassica carinata HOM05D000230 ORTHO05D000176 8.7e-06 53.5 45 53.3
A05p34860 Brassica napus HOM05D000230 ORTHO05D000176 8.7e-06 53.5 45 53.3
C05p52710 Brassica napus HOM05D000230 ORTHO05D000176 8.7e-06 53.5 45 53.3
BraA05t22298Z Brassica rapa HOM05D000230 ORTHO05D000176 8.7e-06 53.5 45 53.3


User provided reference genes

Program Settings