Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001017 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 3.0e-42 174.9 96 100.0
CSS0023455 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 3.7e-40 167.9 96 97.9
Actinidia27896 Actinidia chinensis HOM05D006766 ORTHO05D008534 6.0e-22 107.5 89 69.7
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 3.0e-21 105.1 94 63.8
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 1.6e-19 99.4 101 64.4
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 1.6e-19 99.4 88 69.3
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 4.7e-19 97.8 96 60.4
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 6.2e-19 97.4 95 62.1
TWI31G1395 Tripterygium wilfordii HOM05D006766 ORTHO05D008534 6.2e-19 97.4 96 63.5
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 1.1e-18 96.7 95 64.2
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 1.1e-18 96.7 94 57.4
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 1.4e-18 96.3 83 71.1
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 2.3e-18 95.5 97 61.9
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 3.1e-18 95.1 94 64.9
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 4.0e-18 94.7 94 61.7
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 5.2e-18 94.4 93 62.4
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 5.2e-18 94.4 95 62.1
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 6.8e-18 94.0 93 62.4
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 8.9e-18 93.6 94 69.1
Manes.17G101000 Manihot esculenta HOM05D006766 ORTHO05D008534 2.0e-17 92.4 95 58.9
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 2.0e-17 92.4 94 60.6
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 2.0e-17 92.4 94 62.8
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 2.6e-17 92.0 87 60.9
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 3.4e-17 91.7 93 64.5
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 3.4e-17 91.7 99 59.6
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 4.4e-17 91.3 93 66.7
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 5.8e-17 90.9 97 60.8
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 5.8e-17 90.9 95 58.9
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 7.6e-17 90.5 95 57.9
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 1.7e-16 89.4 95 58.9
PGR142G1230 Punica granatum HOM05D006766 ORTHO05D008534 1.7e-16 89.4 95 63.2
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 2.9e-16 88.6 96 59.4
Actinidia08228 Actinidia chinensis HOM05D006766 ORTHO05D008534 3.7e-16 88.2 72 75.0
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 4.9e-16 87.8 89 65.2
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 1.4e-15 86.3 94 55.3
FAN24G2015 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.4e-15 86.3 90 60.0
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.4e-15 86.3 90 60.0
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 1.9e-15 85.9 89 62.9
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 2.4e-15 85.5 97 52.6
Hma1.2p1_0633F.1_g192560 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 2.4e-15 85.5 88 65.9
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 3.2e-15 85.1 95 56.8
A06p48570 Brassica napus HOM05D006766 ORTHO05D008534 4.1e-15 84.7 89 57.3
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 4.1e-15 84.7 88 65.9
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 4.1e-15 84.7 95 56.8
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 4.1e-15 84.7 94 59.6
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 5.4e-15 84.3 95 55.8
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 7.1e-15 84.0 92 58.7
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 7.1e-15 84.0 95 57.9
Eucgr.I01270 Eucalyptus grandis HOM05D006766 ORTHO05D008534 7.1e-15 84.0 95 58.9
BraA01t00038Z Brassica rapa HOM05D006766 ORTHO05D008534 2.1e-14 82.4 91 59.3
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 2.7e-14 82.0 95 54.7
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 3.5e-14 81.6 93 55.9
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 4.6e-14 81.3 96 59.4
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 4.6e-14 81.3 87 55.2
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 6.0e-14 80.9 95 54.7
C07p63250 Brassica napus HOM05D006766 ORTHO05D008534 1.0e-13 80.1 89 55.1
BolC7t46735H Brassica oleracea HOM05D006766 ORTHO05D008534 1.0e-13 80.1 89 55.1
EL10Ac9g21725 Beta vulgaris HOM05D006766 ORTHO05D008534 2.3e-13 79.0 92 57.6
TAR381G1290 Trochodendron aralioides HOM05D006766 ORTHO05D008534 2.3e-13 79.0 89 61.8
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 3.0e-13 78.6 93 54.8
Duzib052G0491 Durio zibethinus HOM05D006766 ORTHO05D008534 3.9e-13 78.2 87 62.1
Migut.B00236 Erythranthe guttata HOM05D006766 ORTHO05D008534 5.1e-13 77.8 96 49.0
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 5.1e-13 77.8 91 57.1
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 5.1e-13 77.8 91 57.1
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 5.1e-13 77.8 91 57.1
BolC1t00048H Brassica oleracea HOM05D006766 ORTHO05D008534 6.6e-13 77.4 92 57.6
Lsat_1_v5_gn_9_70521 Lactuca sativa HOM05D006766 ORTHO05D008534 6.6e-13 77.4 88 52.3
Glyma.11G117900 Glycine max HOM05D006766 ORTHO05D008534 8.6e-13 77.0 93 53.8
C01p00430 Brassica napus HOM05D006766 ORTHO05D008534 1.9e-12 75.9 90 57.8
Aa31LG6G15960 Aethionema arabicum HOM05D006766 ORTHO05D008534 3.3e-12 75.1 93 55.9
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 5.6e-12 74.3 88 59.1
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 7.3e-12 73.9 94 53.2
Ah.01g006260 Amaranthus hybridus HOM05D006766 ORTHO05D008534 9.6e-12 73.6 95 54.7
arahy.Tifrunner.gnm1.ann1.0D280N Arachis hypogaea HOM05D006766 ORTHO05D008534 9.6e-12 73.6 88 56.8
arahy.Tifrunner.gnm1.ann1.PI6USP Arachis hypogaea HOM05D006766 ORTHO05D008534 9.6e-12 73.6 88 56.8
Ca_20875_v3 Cicer arietinum L. HOM05D006766 ORTHO05D008534 1.2e-11 73.2 95 50.5
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 1.6e-11 72.8 93 51.6
Potri.009G115900 Populus trichocarpa HOM05D006766 ORTHO05D008534 1.6e-11 72.8 89 53.9
ClCG02G005020 Citrullus lanatus HOM05D006766 ORTHO05D008534 2.1e-11 72.4 90 57.8
Lalb_Chr01g0002551 Lupinus albus HOM05D006766 ORTHO05D008534 2.1e-11 72.4 96 47.9
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 2.8e-11 72.0 93 51.6
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 2.8e-11 72.0 93 51.6
Psat7g184720 Pisum sativum HOM05D006766 ORTHO05D008534 2.8e-11 72.0 95 50.5
Nn1g04840 Nelumbo nucifera HOM05D006766 ORTHO05D008534 4.7e-11 71.2 90 56.7
Ah.01g019400 Amaranthus hybridus HOM05D001555 ORTHO05D001616 8.1e-11 70.5 92 52.2
Sc18g0004470 Simmondsia chinensis HOM05D006766 ORTHO05D008534 8.1e-11 70.5 94 53.2
CsaV3_7G023550 Cucumis sativus L. HOM05D006766 ORTHO05D008534 1.4e-10 69.7 82 57.3
Dinv42065 Davidia involucrata HOM05D006766 ORTHO05D008534 1.8e-10 69.3 92 46.7
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 3.1e-10 68.6 88 52.3
Sed0021705 Sechium edule HOM05D006766 ORTHO05D008534 3.1e-10 68.6 93 53.8
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 4.0e-10 68.2 93 50.5
Glyma.12G043301 Glycine max HOM05D006766 ORTHO05D008534 4.0e-10 68.2 85 55.3
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 4.0e-10 68.2 89 49.4
AUR62011324 Chenopodium quinoa HOM05D006766 ORTHO05D008534 6.8e-10 67.4 94 54.3
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 6.8e-10 67.4 94 48.9
VMungo1127G0063 Vigna mungo HOM05D006766 ORTHO05D008534 8.9e-10 67.0 85 56.5
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 1.2e-09 66.6 82 59.8
AUR62016736 Chenopodium quinoa HOM05D006766 ORTHO05D008534 2.0e-09 65.9 89 55.1
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 2.0e-09 65.9 93 50.5
Lj5g0021871 Lotus japonicus HOM05D006766 ORTHO05D008534 2.6e-09 65.5 88 51.1
RcHm_v2.0_Chr5g0010131 Rosa chinensis HOM05D006766 ORTHO05D008534 3.4e-09 65.1 90 52.2
MELO3C012523.2 Cucumis melo HOM05D006766 ORTHO05D008534 7.6e-09 63.9 83 51.8
Phvul.011G045300 Phaseolus vulgaris HOM05D006766 ORTHO05D008534 7.6e-09 63.9 88 53.4
RcHm_v2.0_Chr1g0349571 Rosa chinensis HOM05D006766 ORTHO05D008534 2.2e-08 62.4 43 74.4
Hund06233 Selenicereus undatus HOM05D006766 ORTHO05D008534 2.2e-08 62.4 87 49.4
TPR.G19399 Trifolium pratense HOM05D006766 ORTHO05D008534 2.2e-08 62.4 88 46.6
CDE04G2003 Ceratophyllum demersum HOM05D006766 ORTHO05D008534 2.9e-08 62.0 93 47.3
SalBow6G1480 Salvia bowleyana HOM05D006766 ORTHO05D008534 6.4e-08 60.8 87 47.1
Sabra09G0089100 Salix brachista HOM05D006766 ORTHO05D008534 1.1e-07 60.1 43 72.1
Medtr4g070030 Medicago truncatula HOM05D006766 ORTHO05D008534 3.2e-07 58.5 88 44.3
BcaNung01271 Brassica carinata HOM05D006766 ORTHO05D008534 2.1e-06 55.8 79 53.2
QL05p011176 Quercus lobata HOM05D006766 ORTHO05D008534 2.7e-06 55.5 31 80.6
SalBow6G2329 Salvia bowleyana HOM05D006766 ORTHO05D008534 7.8e-06 53.9 41 58.5


User provided reference genes

Program Settings