Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 1.7e-48 195.7 100 100.0
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 3.4e-44 181.4 101 91.1
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 8.3e-43 176.8 101 89.1
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 5.4e-42 174.1 101 88.1
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 7.1e-42 173.7 101 87.1
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 9.2e-42 173.3 108 85.2
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 2.1e-41 172.2 98 84.7
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 5.6e-39 164.1 101 83.2
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 5.6e-39 164.1 101 83.2
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 2.1e-38 162.2 101 80.2
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 2.1e-38 162.2 99 78.8
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 1.4e-37 159.5 105 78.1
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 4.0e-37 157.9 99 78.8
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 5.2e-37 157.5 96 81.2
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 1.2e-36 156.4 94 77.7
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 3.8e-35 151.4 99 74.7
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 8.4e-35 150.2 99 74.7
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 8.4e-35 150.2 99 74.7
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 1.4e-34 149.4 94 76.6
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 1.4e-34 149.4 101 79.2
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 1.9e-34 149.1 94 80.9
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.9e-34 149.1 94 75.5
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 7.1e-34 147.1 94 81.9
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 1.2e-33 146.4 100 75.0
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 2.1e-33 145.6 94 77.7
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 2.7e-33 145.2 100 70.0
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 2.7e-33 145.2 100 74.0
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 2.7e-33 145.2 91 79.1
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 3.5e-33 144.8 96 75.0
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 3.5e-33 144.8 94 81.9
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 4.6e-33 144.4 100 73.0
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 7.8e-33 143.7 94 78.7
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 1.0e-32 143.3 101 72.3
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 1.0e-32 143.3 101 77.2
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 1.0e-32 143.3 101 77.2
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 1.3e-32 142.9 96 75.0
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 1.7e-32 142.5 94 75.5
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 2.3e-32 142.1 100 70.0
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 2.3e-32 142.1 101 76.2
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 2.3e-32 142.1 94 76.6
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 3.0e-32 141.7 94 79.8
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 3.9e-32 141.4 94 72.3
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 3.9e-32 141.4 89 75.3
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 3.9e-32 141.4 99 68.7
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 5.1e-32 141.0 94 73.4
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 5.1e-32 141.0 101 75.2
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 6.6e-32 140.6 94 73.4
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 8.7e-32 140.2 99 73.7
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 1.1e-31 139.8 95 75.8
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 1.1e-31 139.8 101 73.3
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 1.5e-31 139.4 99 73.7
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 1.5e-31 139.4 94 78.7
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 1.5e-31 139.4 94 72.3
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 1.9e-31 139.0 95 74.7
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 2.5e-31 138.7 98 72.4
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 2.5e-31 138.7 94 75.5
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 2.5e-31 138.7 99 67.7
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 2.5e-31 138.7 94 68.1
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 7.3e-31 137.1 96 74.0
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 1.3e-30 136.3 102 70.6
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 1.3e-30 136.3 94 71.3
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 1.3e-30 136.3 93 74.2
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 1.3e-30 136.3 90 75.6
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 1.6e-30 136.0 99 66.7
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 2.1e-30 135.6 93 79.6
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 2.1e-30 135.6 94 72.3
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 2.8e-30 135.2 99 74.7
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 3.6e-30 134.8 101 68.3
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 3.6e-30 134.8 95 74.7
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 6.2e-30 134.0 94 68.1
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 1.4e-29 132.9 99 67.7
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 2.4e-29 132.1 98 68.4
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 2.4e-29 132.1 101 65.3
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 3.1e-29 131.7 99 67.7
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 4.0e-29 131.3 101 66.3
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 4.0e-29 131.3 94 67.0
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 5.3e-29 131.0 92 71.7
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 6.9e-29 130.6 95 71.6
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 9.0e-29 130.2 102 64.7
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 1.2e-28 129.8 94 70.2
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 1.5e-28 129.4 95 71.6
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 2.6e-28 128.6 101 69.3
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 3.4e-28 128.3 99 64.6
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 5.8e-28 127.5 77 80.5
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 5.8e-28 127.5 77 80.5
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 7.6e-28 127.1 102 65.7
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 9.9e-28 126.7 102 64.7
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 9.9e-28 126.7 93 69.9
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 9.9e-28 126.7 94 70.2
Rhsim12G0162300 Rhododendron simsii HOM05D005070 ORTHO05D005987 1.7e-27 125.9 138 58.7
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 4.9e-27 124.4 91 65.9
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 4.9e-27 124.4 80 73.8
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 5.4e-26 120.9 78 76.9
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 2.7e-25 118.6 91 62.6
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 2.7e-25 118.6 91 62.6
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 2.7e-25 118.6 91 62.6
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 2.7e-25 118.6 93 66.7
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 2.7e-25 118.6 93 66.7
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 2.7e-25 118.6 93 66.7
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 2.7e-25 118.6 99 65.7
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 3.5e-25 118.2 93 63.4
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 6.0e-25 117.5 93 65.6
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 7.8e-25 117.1 94 66.0
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 7.8e-25 117.1 67 77.6
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 1.3e-24 116.3 93 63.4
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 1.3e-24 116.3 93 63.4
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 1.7e-24 115.9 93 63.4
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 2.3e-24 115.5 95 64.2
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 3.9e-24 114.8 93 62.4
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 3.9e-24 114.8 93 62.4
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 6.6e-24 114.0 101 62.4
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 8.7e-24 113.6 90 60.0
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 3.3e-23 111.7 92 64.1
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 4.3e-23 111.3 93 63.4
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 1.3e-22 109.8 76 76.3
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 2.1e-22 109.0 77 72.7
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 3.6e-22 108.2 76 76.3
arahy.Tifrunner.gnm1.ann1.K5B2QX Arachis hypogaea HOM05D005070 ORTHO05D005987 1.4e-21 106.3 103 55.3
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 1.4e-21 106.3 76 72.4
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 1.8e-21 105.9 94 56.4
arahy.Tifrunner.gnm1.ann1.HW74CG Arachis hypogaea HOM05D005070 ORTHO05D005987 2.4e-21 105.5 103 55.3
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 3.4e-20 101.7 89 59.6
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 4.5e-20 101.3 95 55.8
Manes.14G069501 Manihot esculenta HOM05D005070 ORTHO05D005987 2.9e-19 98.6 88 62.5
HPP92_017066 Vanilla planifolia HOM05D005070 ORTHO05D005987 7.1e-18 94.0 90 52.2
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 1.2e-17 93.2 85 55.3
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 1.6e-17 92.8 69 63.8
AUR62008276 Chenopodium quinoa HOM05D005070 ORTHO05D005987 2.7e-17 92.0 95 49.5
PGSC0003DMG400027010 Solanum tuberosum HOM05D000366 ORTHO05D001950 6.7e-16 87.4 66 71.2
PSO832G4075 Papaver somniferum HOM05D005070 ORTHO05D005987 8.7e-16 87.0 87 55.2
PSO478G4659 Papaver somniferum HOM05D005070 ORTHO05D005987 2.5e-15 85.5 91 53.8
PSO017G3759 Papaver somniferum HOM05D005070 ORTHO05D005987 9.6e-15 83.6 91 51.6
PSO063G7000 Papaver somniferum HOM05D005070 ORTHO05D005987 2.1e-14 82.4 87 54.0
arahy.Tifrunner.gnm1.ann1.67M40U Arachis hypogaea HOM05D005070 ORTHO05D005987 3.1e-13 78.6 55 65.5
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 9.0e-13 77.0 51 68.6
C08p19280 Brassica napus HOM05D000130 ORTHO05D000257 1.2e-12 76.6 73 56.2
HPP92_017347 Vanilla planifolia HOM05D005070 ORTHO05D005987 5.8e-12 74.3 89 48.3
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 1.0e-11 73.6 61 59.0
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 8.4e-11 70.5 57 59.6
Mapoly0038s0062 Marchantia polymorpha HOM05D005070 ORTHO05D005987 1.1e-10 70.1 59 59.3
CSS0046931 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 1.9e-10 69.3 34 100.0
Os09g0382500 Oryza sativa ssp. japonica HOM05D005070 ORTHO05D005987 1.9e-10 69.3 81 49.4
Zm00001eb098990 Zea mays HOM05D005070 ORTHO05D005987 1.9e-10 69.3 58 56.9
MBI18_g17201_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D005987 2.5e-10 68.9 43 74.4
Cpa.g.c35589.2 Carica papaya HOM05D005070 ORTHO05D005987 1.2e-09 66.6 42 78.6
MBI03_g02704_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 1.3e-08 63.2 37 81.1
MBI05_g13276_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 2.3e-08 62.4 34 88.2
MBI15_g16478_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 3.9e-08 61.6 36 80.6
MBI08_g15145_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D004199 1.9e-07 59.3 34 82.4
AagrBONN_evm.TU.Sc2ySwM_344.5276 Anthoceros agrestis HOM05D005070 ORTHO05D005987 1.3e-06 56.6 64 46.9
AagrBONN_evm.TU.Sc2ySwM_362.1955 Anthoceros agrestis HOM05D005070 ORTHO05D005987 2.8e-06 55.5 64 45.3
CBR_g34554 Chara braunii HOM05D005070 ORTHO05D005987 8.2e-06 53.9 46 56.5


User provided reference genes

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