Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 2.8e-205 718.4 361 100.0
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 5.5e-177 624.4 337 95.3
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 9.7e-150 533.9 334 81.1
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.8e-148 529.6 334 80.8
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 5.9e-147 524.6 341 79.2
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 3.7e-141 505.4 324 79.0
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 1.8e-140 503.1 322 80.1
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 4.1e-140 501.9 311 81.7
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 5.3e-140 501.5 329 78.7
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 5.3e-140 501.5 321 79.8
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 7.0e-140 501.1 310 79.0
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 5.0e-138 495.0 327 77.1
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 6.5e-138 494.6 320 80.0
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 1.5e-137 493.4 329 77.2
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 1.9e-137 493.0 323 77.4
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.9e-137 493.0 333 76.9
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 2.5e-137 492.7 327 75.5
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 2.5e-137 492.7 305 80.7
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 3.2e-137 492.3 328 77.4
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 5.5e-137 491.5 327 75.5
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 9.4e-137 490.7 301 83.1
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 2.7e-136 489.2 322 77.6
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 2.7e-136 489.2 322 77.6
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 6.1e-136 488.0 323 77.4
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 6.1e-136 488.0 327 75.8
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 6.1e-136 488.0 331 74.9
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 6.1e-136 488.0 329 76.3
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 8.0e-136 487.6 322 77.3
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 1.0e-135 487.3 332 75.3
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 1.4e-135 486.9 341 74.2
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 3.0e-135 485.7 309 80.6
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 4.0e-135 485.3 310 80.3
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 5.2e-135 485.0 319 77.7
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 5.2e-135 485.0 347 74.1
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 8.8e-135 484.2 299 80.9
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 1.2e-134 483.8 329 76.6
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 1.5e-134 483.4 329 75.1
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 2.0e-134 483.0 329 76.6
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 2.6e-134 482.6 327 76.1
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 3.4e-134 482.3 329 75.1
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 3.4e-134 482.3 328 75.3
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 4.4e-134 481.9 301 81.1
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 5.7e-134 481.5 327 75.5
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 7.5e-134 481.1 329 74.5
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 1.3e-133 480.3 329 73.3
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 1.7e-133 479.9 306 79.7
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 2.2e-133 479.6 335 75.5
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 4.8e-133 478.4 331 75.5
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 6.3e-133 478.0 319 77.1
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 6.3e-133 478.0 329 75.1
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 8.3e-133 477.6 314 77.7
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 1.4e-132 476.9 327 75.5
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 1.8e-132 476.5 318 77.0
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 3.1e-132 475.7 328 73.8
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 4.1e-132 475.3 324 76.2
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 4.1e-132 475.3 317 76.3
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 5.4e-132 474.9 333 75.1
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 5.4e-132 474.9 329 75.4
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 9.1e-132 474.2 327 73.7
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 1.2e-131 473.8 330 75.2
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 1.2e-131 473.8 333 74.8
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 1.2e-131 473.8 328 74.7
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 5.9e-131 471.5 327 74.0
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 7.7e-131 471.1 396 65.7
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 3.8e-130 468.8 329 73.6
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 8.5e-130 467.6 327 71.6
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.1e-129 467.2 357 69.5
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 2.5e-129 466.1 329 74.2
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 4.2e-129 465.3 311 75.2
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 9.4e-129 464.2 332 73.5
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 1.2e-128 463.8 332 73.2
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.2e-128 463.8 332 72.6
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 1.6e-128 463.4 306 75.8
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 2.1e-128 463.0 328 74.7
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 2.7e-128 462.6 330 73.6
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 1.4e-127 460.3 311 74.6
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 1.4e-127 460.3 289 80.3
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 1.4e-127 460.3 327 72.8
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 3.0e-127 459.1 323 74.3
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 4.0e-127 458.8 315 75.2
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 8.8e-127 457.6 302 77.5
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 1.2e-126 457.2 329 73.3
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 2.0e-126 456.4 299 76.6
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 4.4e-126 455.3 336 69.6
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 9.8e-126 454.1 320 72.5
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 1.7e-125 453.4 328 69.5
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 1.6e-123 446.8 300 75.7
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 1.3e-122 443.7 338 69.8
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 2.5e-121 439.5 320 71.9
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 4.3e-121 438.7 336 69.0
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 1.2e-120 437.2 332 66.6
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 2.8e-120 436.0 315 68.6
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 4.7e-120 435.3 319 71.8
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 1.0e-119 434.1 316 69.0
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 1.4e-119 433.7 323 71.5
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.8e-119 433.3 312 70.2
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 1.5e-118 430.3 336 64.9
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 9.8e-118 427.6 313 71.6
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 1.7e-117 426.8 329 66.0
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 1.7e-117 426.8 251 85.7
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 6.4e-117 424.9 335 67.2
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 6.4e-117 424.9 298 74.2
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 5.4e-116 421.8 279 75.6
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 7.0e-116 421.4 320 69.4
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 1.7e-114 416.8 342 63.5
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 9.5e-113 411.0 331 63.1
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 1.2e-112 410.6 331 62.2
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 1.4e-111 407.1 471 52.2
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 3.1e-111 406.0 325 65.5
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 8.9e-111 404.4 293 71.3
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 1.2e-110 404.1 325 65.2
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 3.4e-110 402.5 331 61.6
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 5.8e-110 401.7 310 66.8
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 7.5e-110 401.4 324 65.1
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 7.5e-110 401.4 333 64.0
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 7.5e-110 401.4 328 65.9
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 1.7e-109 400.2 330 63.9
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 1.7e-109 400.2 330 63.9
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 1.7e-109 400.2 325 64.9
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 6.4e-109 398.3 310 67.1
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 1.9e-108 396.7 335 65.4
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 3.2e-108 396.0 310 66.1
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 3.2e-108 396.0 310 66.1
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 5.4e-108 395.2 310 66.1
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 7.0e-108 394.8 306 67.0
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 2.7e-107 392.9 321 63.6
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 2.7e-107 392.9 330 61.5
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 2.7e-107 392.9 330 61.5
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 7.8e-107 391.3 302 62.3
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 1.0e-106 391.0 311 63.7
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.3e-106 390.6 249 80.3
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 3.1e-103 379.4 348 58.6
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 6.8e-103 378.3 296 65.9
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 3.7e-101 372.5 327 62.4
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 4.1e-100 369.0 282 70.9
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 1.5e-94 350.5 286 62.9
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 7.1e-92 341.7 303 63.0
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 6.0e-91 338.6 211 80.6
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 1.9e-89 333.6 265 64.5
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 1.4e-84 317.4 324 51.5
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 8.7e-82 308.1 318 50.9
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 2.8e-80 303.1 340 51.8
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 6.2e-80 302.0 204 76.5
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 7.6e-78 295.0 273 55.7
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 4.9e-77 292.4 214 70.6
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 5.4e-76 288.9 323 49.5
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 6.0e-75 285.4 185 79.5
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 1.9e-73 280.4 183 76.5
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 3.3e-73 279.6 213 69.5
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 1.3e-69 267.7 174 77.6
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 8.7e-66 255.0 248 56.9
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 1.2e-59 234.6 167 73.1
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 5.7e-57 225.7 281 43.8
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 3.9e-50 203.0 121 81.8
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 2.4e-47 193.7 104 88.5
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 2.9e-45 186.8 105 82.9
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 5.0e-45 186.0 165 58.2
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 1.5e-38 164.5 90 86.7
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 3.8e-37 159.8 108 76.9
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 2.5e-28 130.6 92 67.4
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 1.3e-21 108.2 268 27.6
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 1.5e-17 94.7 286 28.3
BcaB01g01266 Brassica carinata HOM05D000313 ORTHO05D000065 2.7e-06 57.4 37 78.4


User provided reference genes

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