Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 2142.1 1081 100.0
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1919.8 1083 88.6
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1884.8 1079 87.4
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1821.6 1089 83.5
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1815.8 1092 82.5
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1814.7 1092 82.4
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1812.7 1084 83.5
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1811.6 1087 82.6
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1811.6 1169 79.6
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1810.8 1090 82.9
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1809.7 1092 82.3
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1809.7 1101 82.2
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1808.9 1083 82.9
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1808.1 1086 82.8
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1806.2 1088 83.1
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1805.4 1083 83.4
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1803.9 1198 77.3
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1801.9 1086 82.7
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1800.4 1091 82.0
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1800.0 1083 82.8
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1794.6 1083 82.4
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1791.9 1079 82.9
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1790.0 1079 82.8
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1786.9 1079 82.6
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1786.5 1085 81.6
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1786.2 1082 82.3
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1783.8 1090 81.8
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1782.3 1091 82.1
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1781.1 1077 82.7
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1781.1 1093 81.9
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1780.0 1078 82.0
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1779.2 1092 81.8
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1777.7 1083 82.8
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1776.1 1109 80.9
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1775.8 1083 81.2
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1761.9 1090 81.5
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1758.4 1087 80.8
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1758.0 1080 80.8
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1757.7 1086 81.4
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1756.5 1091 81.3
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1755.3 1103 80.1
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1752.6 1085 80.2
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1750.3 1092 81.3
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1749.6 1085 80.3
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1746.5 1089 80.3
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1743.8 1079 80.9
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1741.5 1080 81.7
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1738.0 1085 79.9
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1737.2 1132 78.1
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1736.5 1106 80.0
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1736.1 1085 79.5
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1727.2 1120 77.2
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1726.8 1084 80.3
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1726.8 1083 79.8
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1723.8 1086 79.8
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1720.3 1070 80.5
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1720.3 1083 78.9
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1718.0 1011 83.4
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1716.8 1183 74.7
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1716.4 1088 78.7
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1715.7 1087 78.8
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1713.0 1086 79.1
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1710.7 1091 79.4
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1705.6 1089 79.3
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1701.4 1053 80.8
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1700.6 1088 78.0
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1690.6 1007 81.9
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1682.5 1094 77.3
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1677.1 1085 76.3
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1675.6 1080 77.4
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1671.4 1063 78.1
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1668.3 1066 77.6
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1666.7 1053 78.2
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1666.7 1083 76.6
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1666.0 1089 76.7
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1662.1 1084 76.8
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1662.1 1066 77.4
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1661.0 1086 76.7
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1659.8 1081 76.3
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1656.7 1084 76.8
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1656.3 1096 75.8
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1654.8 1086 76.1
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1654.4 1042 78.5
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1653.3 1042 78.6
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1649.0 1031 78.5
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1648.6 1061 77.1
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1648.3 1064 77.9
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1647.5 1081 76.3
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1647.5 1056 77.9
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1646.3 1031 78.8
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1646.3 1031 78.8
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1642.1 1075 76.1
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1640.2 1037 78.0
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1640.2 1103 74.9
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1637.9 1061 76.7
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1634.8 1119 74.2
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1634.0 1078 76.3
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1632.8 1067 76.4
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1627.1 1066 76.3
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1625.5 1062 76.2
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1625.5 1061 76.8
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1623.2 1153 71.8
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1618.6 1073 76.6
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1614.7 1118 73.6
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1613.2 1030 77.7
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1570.4 1115 72.4
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1551.6 869 87.6
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1540.8 1009 76.5
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1537.3 914 81.7
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1531.9 969 77.5
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1518.8 1056 74.1
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1496.5 1016 71.2
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1469.9 1018 70.1
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1429.8 1108 68.6
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1429.5 1108 68.5
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1394.0 957 71.1
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1370.1 801 83.1
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1305.8 1018 63.9
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1270.4 1046 62.4
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1241.9 748 82.8
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1213.4 830 74.1
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1206.0 722 83.2
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1153.3 722 78.7
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1133.6 1039 55.3
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1132.9 999 55.2
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1110.5 997 56.4
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1099.3 739 74.0
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 3.4e-299 1031.9 884 63.7
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 8.4e-298 1027.3 875 60.8
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 3.8e-282 975.3 596 83.7
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 4.0e-276 955.3 777 61.3
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 1.4e-265 920.2 580 75.9
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 1.6e-248 863.6 1003 45.1
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.0e-226 791.2 448 87.7
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 6.8e-223 778.5 671 58.7
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 4.4e-222 775.8 642 64.2
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 3.2e-212 743.0 706 56.8
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 6.2e-192 675.6 417 79.9
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 5.8e-190 669.1 532 68.6
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 3.1e-183 646.7 506 68.2
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 2.1e-179 634.0 408 77.0
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 6.2e-168 595.9 474 67.9
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 4.9e-165 586.3 347 85.3
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 6.0e-163 579.3 1029 37.2
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 8.2e-160 568.9 393 69.7
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 2.5e-140 504.2 405 65.7
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 5.3e-135 486.5 328 72.6
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 7.0e-135 486.1 309 77.7
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 2.9e-133 480.7 396 62.9
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 1.3e-112 412.1 988 30.6
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.9e-108 398.3 948 30.1
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 9.8e-105 386.0 288 72.2
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 2.8e-104 384.4 963 28.9
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 1.6e-102 378.6 228 82.0
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.1e-95 355.9 907 30.7
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 6.4e-80 303.5 154 89.6
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 4.3e-60 237.7 222 54.5
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 1.3e-59 236.1 875 23.7
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 6.0e-54 217.2 332 36.4
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 1.5e-52 212.6 310 44.2
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 1.1e-47 196.4 124 79.8
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 1.0e-45 189.9 220 52.7
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 3.3e-44 184.9 151 67.5
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 7.4e-44 183.7 163 58.9
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 9.6e-44 183.3 154 63.6
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 5.3e-42 177.6 152 58.6
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 3.8e-40 171.4 273 38.8
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 3.5e-38 164.9 126 66.7
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 4.6e-38 164.5 461 27.1
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 6.3e-35 154.1 149 55.7
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 8.5e-32 143.7 162 43.2
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 2.3e-29 135.6 425 25.9
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 9.1e-26 123.6 111 54.1
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 1.3e-24 119.8 298 26.8
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 4.2e-23 114.8 81 66.7
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 3.7e-19 101.7 83 63.9
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 3.0e-13 82.0 56 67.9
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 5.2e-13 81.3 55 67.3
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 1.1e-10 73.6 179 39.7
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 1.8e-10 72.8 49 67.3
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 1.2e-09 70.1 45 71.1
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 1.7e-08 66.2 36 83.3
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 9.4e-07 60.5 66 50.0


User provided reference genes

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