Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000965 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 3.0e-86 323.9 218 100.0
Migut.H02282 Erythranthe guttata HOM05D003210 ORTHO05D000001 7.5e-45 186.4 208 69.7
Cpa.g.sc10.84 Carica papaya HOM05D003210 ORTHO05D000001 1.8e-43 181.8 207 62.8
Prupe.1G583300 Prunus persica HOM05D003210 ORTHO05D000001 1.8e-43 181.8 207 60.9
Cc03_g12590 Coffea canephora HOM05D003210 ORTHO05D000001 2.7e-42 177.9 213 69.5
MD15G1441200 Malus domestica HOM05D003210 ORTHO05D000001 5.9e-42 176.8 207 45.9
Manes.12G124600 Manihot esculenta HOM05D003210 ORTHO05D000001 5.9e-42 176.8 207 67.6
Potri.006G124900 Populus trichocarpa HOM05D003210 ORTHO05D000001 8.6e-41 172.9 207 67.1
FvH4_7g04271 Fragaria vesca HOM05D003210 ORTHO05D000001 1.5e-40 172.2 207 46.4
FAN03G0748 Fragaria x ananassa HOM05D003210 ORTHO05D000001 2.5e-40 171.4 207 45.9
MD08G1245900 Malus domestica HOM05D003210 ORTHO05D000001 3.3e-40 171.0 207 44.0
RcHm_v2.0_Chr1g0329241 Rosa chinensis HOM05D003210 ORTHO05D000001 4.7e-39 167.2 200 45.5
Sabra06G0098600 Salix brachista HOM05D003210 ORTHO05D000001 2.3e-38 164.9 207 66.2
Nitab4.5_0002364g0030 Nicotiana tabacum HOM05D003210 ORTHO05D000001 6.8e-38 163.3 206 67.0
CAN.G674.2 Capsicum annuum HOM05D003210 ORTHO05D000001 2.0e-37 161.8 189 55.0
PGSC0003DMG401028232 Solanum tuberosum HOM05D003210 ORTHO05D000001 2.6e-37 161.4 189 67.7
Sopen10g032390 Solanum pennellii HOM05D003210 ORTHO05D000001 7.5e-37 159.8 189 65.6
Solyc10g081880.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 2.2e-36 158.3 189 67.7
Nitab4.5_0000574g0030 Nicotiana tabacum HOM05D003210 ORTHO05D000001 3.7e-36 157.5 206 66.0
Peaxi162Scf00370g00062 Petunia axillaris HOM05D003210 ORTHO05D000001 8.3e-36 156.4 207 61.4
Prupe.4G256300 Prunus persica HOM05D003210 ORTHO05D000001 2.4e-35 154.8 203 41.4
PGSC0003DMG400023572 Solanum tuberosum HOM05D003210 ORTHO05D000001 7.0e-35 153.3 207 66.2
GSVIVG01038280001 Vitis vinifera HOM05D003210 ORTHO05D000001 9.2e-35 152.9 207 64.7
AUR62039467 Chenopodium quinoa HOM05D003210 ORTHO05D000001 1.2e-34 152.5 208 36.1
Glyma.09G200200 Glycine max HOM05D003210 ORTHO05D000001 2.0e-34 151.8 207 55.1
Nitab4.5_0005257g0020 Nicotiana tabacum HOM05D003210 ORTHO05D000001 2.0e-34 151.8 189 65.6
MD11G1188000 Malus domestica HOM05D003210 ORTHO05D000001 3.5e-34 151.0 207 50.7
TWI74G0121 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 3.5e-34 151.0 207 62.3
AUR62027713 Chenopodium quinoa HOM05D003210 ORTHO05D000001 4.5e-34 150.6 208 36.5
FAN26G1074 Fragaria x ananassa HOM05D003210 ORTHO05D000001 5.9e-34 150.2 206 39.3
Aqoxy6G00832 Aquilegia oxysepala HOM05D003210 ORTHO05D000001 7.8e-34 149.8 185 40.5
FAN28G0230 Fragaria x ananassa HOM05D003210 ORTHO05D000001 7.8e-34 149.8 206 38.8
TWI53G0425 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 7.8e-34 149.8 207 51.7
CsaV3_6G031450 Cucumis sativus L. HOM05D003210 ORTHO05D000001 1.7e-33 148.7 206 60.7
HanXRQChr04g0122161 Helianthus annuus HOM05D003210 ORTHO05D000001 5.0e-33 147.1 182 65.4
FvH4_1g06430 Fragaria vesca HOM05D003210 ORTHO05D000001 1.9e-32 145.2 206 37.9
FAN19G0968 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.9e-32 145.2 206 37.9
Gorai.008G093300 Gossypium raimondii HOM05D003210 ORTHO05D000001 1.9e-32 145.2 191 67.0
HanXRQChr06g0169331 Helianthus annuus HOM05D003210 ORTHO05D000001 1.9e-32 145.2 182 69.8
SalBow3G1735 Salvia bowleyana HOM05D003210 ORTHO05D000001 1.9e-32 145.2 182 70.9
Gohir.A12G085200 Gossypium hirsutum HOM05D003210 ORTHO05D000001 5.6e-32 143.7 203 64.0
Lsat_1_v5_gn_7_6901 Lactuca sativa HOM05D003210 ORTHO05D000001 9.5e-32 142.9 183 69.4
FAN20G1808 Fragaria x ananassa HOM05D003210 ORTHO05D000001 8.0e-31 139.8 207 36.7
RcHm_v2.0_Chr2g0092171 Rosa chinensis HOM05D003210 ORTHO05D000001 1.4e-30 139.0 206 37.4
MELO3C026530.2 Cucumis melo HOM05D003210 ORTHO05D000001 2.3e-30 138.3 203 60.6
FvH4_2g11090 Fragaria vesca HOM05D003210 ORTHO05D000001 4.0e-30 137.5 207 36.2
FAN24G1052 Fragaria x ananassa HOM05D003210 ORTHO05D000001 4.0e-30 137.5 207 36.2
Phvul.008G101600 Phaseolus vulgaris HOM05D003210 ORTHO05D000001 4.4e-29 134.0 207 51.7
Psat3g169880 Pisum sativum HOM05D003210 ORTHO05D000001 2.2e-28 131.7 182 58.8
VMungo1215G2034 Vigna mungo HOM05D003210 ORTHO05D000001 6.4e-28 130.2 207 37.7
Phvul.002G145400 Phaseolus vulgaris HOM05D003210 ORTHO05D000001 1.4e-27 129.0 207 56.0
Lalb_Chr19g0125341 Lupinus albus HOM05D003210 ORTHO05D000001 1.9e-27 128.6 207 58.5
FAN26G0660 Fragaria x ananassa HOM05D000020 ORTHO05D000001 9.2e-27 126.3 184 50.0
Oeu040066.1 Olea europaea HOM05D003210 ORTHO05D000001 1.6e-26 125.6 179 62.6
SHI21874 Sapria himalayana HOM05D003210 ORTHO05D000001 3.5e-26 124.4 181 42.5
Haze_03893 Corylus avellana HOM05D003210 ORTHO05D000001 1.0e-25 122.9 165 67.3
Dinv34734 Davidia involucrata HOM05D003210 ORTHO05D000001 2.1e-23 115.2 66 78.8
Oeu017113.2 Olea europaea HOM05D000258 ORTHO05D000001 2.1e-23 115.2 75 66.7
vmacro18279 Vaccinium macrocarpon HOM05D003210 ORTHO05D008377 4.7e-23 114.0 206 60.7
Eucgr.H02438 Eucalyptus grandis HOM05D003210 ORTHO05D000001 2.3e-22 111.7 208 50.0
Glyma.01G021450 Glycine max HOM05D003210 ORTHO05D000001 2.3e-22 111.7 181 55.2
Rhsim05G0168300 Rhododendron simsii HOM05D003210 ORTHO05D000001 2.6e-21 108.2 73 69.9
VMungo1383G3073 Vigna mungo HOM05D003210 ORTHO05D000001 3.4e-21 107.8 182 56.0
Oeu017112.4 Olea europaea HOM05D000167 ORTHO05D000465 4.4e-21 107.5 175 41.7
Lj3C22T6 Lonicera japonica HOM05D003210 ORTHO05D000001 2.2e-20 105.1 75 69.3
Sp2g28660 Schrenkiella parvula HOM05D003210 ORTHO05D000001 2.2e-20 105.1 172 32.6
BcaC01g02798 Brassica carinata HOM05D003210 ORTHO05D000001 1.1e-19 102.8 174 31.0
C03p60210 Brassica napus HOM05D003210 ORTHO05D000001 1.1e-19 102.8 174 31.0
BolC3t18283H Brassica oleracea HOM05D003210 ORTHO05D000001 1.1e-19 102.8 174 31.0
A06p32400 Brassica napus HOM05D003210 ORTHO05D000001 2.4e-19 101.7 174 49.4
BraA06t26165Z Brassica rapa HOM05D003210 ORTHO05D000001 2.4e-19 101.7 174 50.0
AL7G34260 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 3.2e-19 101.3 207 48.8
Carub.0008s2641 Capsella rubella HOM05D003210 ORTHO05D000001 4.1e-19 100.9 174 33.3
TAR625G1193 Trochodendron aralioides HOM05D003210 ORTHO05D000001 7.0e-19 100.1 207 56.0
AT5G65560 Arabidopsis thaliana HOM05D003210 ORTHO05D000001 1.6e-18 99.0 173 31.2
Ca_25227_v3 Cicer arietinum L. HOM05D003210 ORTHO05D000001 2.7e-18 98.2 207 50.2
Gohir.D12G079600 Gossypium hirsutum HOM05D003210 ORTHO05D000001 4.6e-18 97.4 191 58.6
Ciclev10018770m.g Citrus clementina HOM05D003210 ORTHO05D000001 6.0e-18 97.1 206 55.8
EL10Ac6g15188 Beta vulgaris HOM05D003210 ORTHO05D000001 1.0e-17 96.3 165 30.3
AL8G43160 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 3.0e-17 94.7 173 30.6
Carub.0002s2422 Capsella rubella HOM05D003210 ORTHO05D000001 8.6e-17 93.2 176 59.7
COL.COLO4_27373 Corchorus olitorius HOM05D003210 ORTHO05D000001 1.1e-16 92.8 152 54.6
TAR381G0732 Trochodendron aralioides HOM05D003210 ORTHO05D000001 2.5e-16 91.7 75 53.3
CiPaw.08G142200 Carya illinoinensis HOM05D003210 ORTHO05D000001 3.1e-14 84.7 68 55.9
Os02g0582300 Oryza sativa ssp. japonica HOM05D003210 ORTHO05D000001 4.0e-14 84.3 195 26.2
Atru.chr4.1465 Acer truncatum HOM05D003210 ORTHO05D000001 5.2e-14 84.0 72 56.9
Thecc.01G191200 Theobroma cacao HOM05D003210 ORTHO05D000001 5.2e-14 84.0 170 36.5
MBI16_g31256_MAGBIO Magnolia biondii HOM05D003210 ORTHO05D000001 8.9e-14 83.2 75 50.7
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 1.2e-13 82.8 75 60.0
Prupe.3G201200 Prunus persica HOM05D003210 ORTHO05D000001 1.5e-13 82.4 170 27.1
AL2G37540 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 2.0e-13 82.0 77 48.1
AL3G14030 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 2.0e-13 82.0 207 49.3
Thecc.01G088700 Theobroma cacao HOM05D003210 ORTHO05D000001 2.0e-13 82.0 72 58.3
Nitab4.5_0002165g0010 Nicotiana tabacum HOM05D003210 ORTHO05D000001 2.6e-13 81.6 132 70.5
Duzib264G1117 Durio zibethinus HOM05D003210 ORTHO05D000001 3.4e-13 81.3 57 66.7
QL12p037893 Quercus lobata HOM05D003210 ORTHO05D000001 5.8e-13 80.5 68 52.9
Zm00001eb183350 Zea mays HOM05D003210 ORTHO05D000001 7.5e-13 80.1 181 38.7
MELO3C024111.2 Cucumis melo HOM05D003210 ORTHO05D000001 9.9e-13 79.7 200 48.5
Actinidia28466 Actinidia chinensis HOM05D003210 ORTHO05D000001 8.3e-12 76.6 94 45.7
Zm00001eb037970 Zea mays HOM05D003210 ORTHO05D000001 1.1e-11 76.3 76 42.1
CsaV3_7G021590 Cucumis sativus L. HOM05D003210 ORTHO05D000001 4.1e-11 74.3 174 50.0
ClCG02G002730 Citrullus lanatus HOM05D003210 ORTHO05D000001 5.4e-11 73.9 174 50.0
CsaV3_7G023730 Cucumis sativus L. HOM05D003210 ORTHO05D000001 5.4e-11 73.9 200 45.5
Sc06g0009870 Simmondsia chinensis HOM05D003210 ORTHO05D000001 7.1e-11 73.6 170 25.9
FAN23G1801 Fragaria x ananassa HOM05D003210 ORTHO05D000001 9.2e-11 73.2 68 50.0
Ciclev10014182m.g Citrus clementina HOM05D003210 ORTHO05D000001 1.2e-10 72.8 200 41.5
CiPaw.12G072400 Carya illinoinensis HOM05D003210 ORTHO05D000001 2.1e-10 72.0 200 46.5
A01p07620 Brassica napus HOM05D015591 ORTHO05D000001 2.7e-10 71.6 61 54.1
BraA01t00705Z Brassica rapa HOM05D015591 ORTHO05D000001 2.7e-10 71.6 61 54.1
Sed0026111 Sechium edule HOM05D003210 ORTHO05D000001 2.7e-10 71.6 68 44.1
Sp7g28540 Schrenkiella parvula HOM05D015591 ORTHO05D000001 3.5e-10 71.2 61 55.7
Sc16g0000610 Simmondsia chinensis HOM05D003210 ORTHO05D000001 6.0e-10 70.5 75 38.7
BcaC09g51856 Brassica carinata HOM05D015591 ORTHO05D000001 7.8e-10 70.1 61 55.7
C01p08300 Brassica napus HOM05D015591 ORTHO05D000001 7.8e-10 70.1 61 55.7
BolC1t00816H Brassica oleracea HOM05D015591 ORTHO05D000001 7.8e-10 70.1 61 55.7
MD03G1170600 Malus domestica HOM05D003210 ORTHO05D000001 7.8e-10 70.1 70 45.7
PGR102G2337 Punica granatum HOM05D003210 ORTHO05D000001 1.3e-09 69.3 75 44.0
Sed0013166 Sechium edule HOM05D003210 ORTHO05D000001 2.3e-09 68.6 200 45.5
TPR.G36733 Trifolium pratense HOM05D003210 ORTHO05D000001 3.0e-09 68.2 68 45.6
BcaC09g51855 Brassica carinata HOM05D015591 ORTHO05D000001 5.1e-09 67.4 57 56.1
Lalb_Chr09g0325941 Lupinus albus HOM05D003210 ORTHO05D000001 5.1e-09 67.4 68 45.6
CSS0019582 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 6.6e-09 67.0 174 41.4
CSS0039883 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 6.6e-09 67.0 174 40.2
FvH4_6g41080 Fragaria vesca HOM05D003210 ORTHO05D000001 6.6e-09 67.0 168 23.8
FAN14G2019 Fragaria x ananassa HOM05D003210 ORTHO05D000001 6.6e-09 67.0 168 23.8
CANSAT01G1059 Cannabis sativa HOM05D003210 ORTHO05D000001 8.6e-09 66.6 207 48.3
Haze_07989 Corylus avellana HOM05D003210 ORTHO05D000001 8.6e-09 66.6 171 49.1
THA.LOC104819041 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 8.6e-09 66.6 77 37.7
MELO3C013188.2 Cucumis melo HOM05D003210 ORTHO05D000001 1.1e-08 66.2 200 44.5
Dinv24763 Davidia involucrata HOM05D003210 ORTHO05D000001 1.1e-08 66.2 55 56.4
Lj2g0010731 Lotus japonicus HOM05D003210 ORTHO05D000001 1.1e-08 66.2 74 39.2
SHI10143 Sapria himalayana HOM05D003210 ORTHO05D000001 1.1e-08 66.2 68 45.6
ECA236G0103 Erigeron canadensis HOM05D003210 ORTHO05D000001 1.5e-08 65.9 52 51.9
PSO541G2059 Papaver somniferum HOM05D003210 ORTHO05D000001 1.9e-08 65.5 77 37.7
Cfa012658 Carpinus fangiana HOM05D003210 ORTHO05D000001 2.5e-08 65.1 171 49.7
ClCG08G009320 Citrullus lanatus HOM05D003210 ORTHO05D000001 2.5e-08 65.1 74 36.5
arahy.Tifrunner.gnm1.ann1.PFI7NN Arachis hypogaea HOM05D003210 ORTHO05D000001 3.3e-08 64.7 68 44.1
arahy.Tifrunner.gnm1.ann1.SQ2KUV Arachis hypogaea HOM05D003210 ORTHO05D000001 3.3e-08 64.7 68 44.1
Migut.M00034 Erythranthe guttata HOM05D003210 ORTHO05D000001 9.5e-08 63.2 170 50.6
Medtr5g031740 Medicago truncatula HOM05D003210 ORTHO05D000001 9.5e-08 63.2 68 45.6
THA.LOC104798889 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 1.2e-07 62.8 207 44.4
Rhsim06G0174500 Rhododendron simsii HOM05D003210 ORTHO05D000001 2.8e-07 61.6 174 47.7
Lsat_1_v5_gn_9_17361 Lactuca sativa HOM05D008810 ORTHO05D010971 3.6e-07 61.2 66 47.0
SGA_v2.0_scaffold181G39678 Striga asiatica HOM05D003210 ORTHO05D000001 3.6e-07 61.2 179 47.5
FAN09G1124 Fragaria x ananassa HOM05D003210 ORTHO05D000001 6.2e-07 60.5 50 52.0
Migut.N00641 Erythranthe guttata HOM05D008810 ORTHO05D010971 8.1e-07 60.1 65 43.1
QL04p021900 Quercus lobata HOM05D003210 ORTHO05D000001 1.4e-06 59.3 170 51.2
TAR629G0622 Trochodendron aralioides HOM05D003210 ORTHO05D000001 1.4e-06 59.3 174 47.7
vmacro02795 Vaccinium macrocarpon HOM05D008810 ORTHO05D010971 1.4e-06 59.3 65 46.2
Hund03005 Selenicereus undatus HOM05D003210 ORTHO05D000001 1.8e-06 58.9 74 36.5
Dinv24770 Davidia involucrata HOM05D003210 ORTHO05D000001 2.4e-06 58.5 50 48.0
MSTRG.6643 Avicennia marina HOM05D003210 ORTHO05D000001 3.1e-06 58.2 165 50.3
DCAR_012908 Daucus carota HOM05D003210 ORTHO05D000001 3.1e-06 58.2 200 42.0
DCAR_012925 Daucus carota HOM05D003210 ORTHO05D000001 3.1e-06 58.2 200 42.0
Lj2P1121T65 Lonicera japonica HOM05D008810 ORTHO05D010971 3.1e-06 58.2 60 46.7
GSVIVG01005921001 Vitis vinifera HOM05D008810 ORTHO05D010971 4.0e-06 57.8 65 41.5
MD09G1122300 Malus domestica HOM05D003210 ORTHO05D000001 5.2e-06 57.4 164 50.0
Atru.chr6.3361 Acer truncatum HOM05D003210 ORTHO05D000001 8.9e-06 56.6 200 37.0


User provided reference genes

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