Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000959 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 2.5e-52 208.4 98 100.0
CSS0047350 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 6.1e-30 134.0 86 76.7
CSS0017101 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 1.6e-22 109.4 80 67.5
CSS0024781 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 6.7e-21 104.0 68 69.1
CSS0029903 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 8.8e-21 103.6 80 65.0
CSS0042344 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 7.4e-20 100.5 81 64.2
CSS0018658 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 1.3e-19 99.8 79 63.3
CSS0025679 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 1.3e-19 99.8 80 62.5
CSS0012554 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 8.2e-19 97.1 70 64.3
CSS0016458 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 2.0e-17 92.4 91 48.4
CSS0023562 Camellia sinensis var. sinensis HOM05D000557 ORTHO05D011057 9.4e-15 83.6 66 57.6
CSS0043342 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 9.4e-15 83.6 85 50.6
Actinidia07483 Actinidia chinensis HOM05D011882 ORTHO05D011057 5.2e-13 77.8 81 49.4
vmacro11531 Vaccinium macrocarpon HOM05D010265 ORTHO05D009356 3.4e-12 75.1 66 53.0
vmacro16299 Vaccinium macrocarpon HOM05D000629 ORTHO05D000576 3.4e-12 75.1 73 52.1
CSS0001491 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 1.3e-11 73.2 53 64.2
Actinidia24024 Actinidia chinensis HOM05D023450 ORTHO05D023249 8.3e-11 70.5 65 50.8
CSS0020841 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 2.7e-09 65.5 62 53.2
vmacro05509 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 2.7e-09 65.5 44 63.6
CSS0047841 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 4.5e-09 64.7 62 51.6
vmacro00634 Vaccinium macrocarpon HOM05D000516 ORTHO05D000409 7.7e-09 63.9 66 47.0
CSS0020104 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 1.7e-08 62.8 46 63.0
vmacro12730 Vaccinium macrocarpon HOM05D002015 ORTHO05D011057 2.2e-08 62.4 74 41.9
CSS0010468 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D011057 3.8e-08 61.6 54 51.9
vmacro09750 Vaccinium macrocarpon HOM05D005228 ORTHO05D006208 3.8e-08 61.6 73 41.1
vmacro22723 Vaccinium macrocarpon HOM05D005228 ORTHO05D006208 3.8e-08 61.6 73 41.1
Actinidia11796 Actinidia chinensis HOM05D002604 ORTHO05D009356 5.0e-08 61.2 76 40.8
Rhsim09G0042800 Rhododendron simsii HOM05D017214 ORTHO05D018100 6.5e-08 60.8 82 36.6
Rhsim03G0015400 Rhododendron simsii HOM05D008219 ORTHO05D009356 8.5e-08 60.5 68 44.1
Sc04g0002380 Simmondsia chinensis HOM05D009209 ORTHO05D011057 1.5e-07 59.7 64 46.9
Rhsim02G0045800 Rhododendron simsii HOM05D008219 ORTHO05D009356 5.5e-07 57.8 67 43.3
Ah.01g013230 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.2e-06 56.6 95 37.9
Rhsim10G0184600 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.6e-06 56.2 68 42.6
RhsimUnG0052900 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.6e-06 56.2 68 42.6
CSS0021702 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 2.1e-06 55.8 48 58.3
vmacro21928 Vaccinium macrocarpon HOM05D000086 ORTHO05D000431 2.1e-06 55.8 80 37.5
Actinidia34556 Actinidia chinensis HOM05D008219 ORTHO05D009356 2.7e-06 55.5 74 39.2
Rhsim10G0189500 Rhododendron simsii HOM05D019536 ORTHO05D011057 2.7e-06 55.5 66 45.5
Ah.09g226780 Amaranthus hybridus HOM05D008762 ORTHO05D011252 3.6e-06 55.1 73 46.6
Rhsim13G0125400 Rhododendron simsii HOM05D008219 ORTHO05D009356 3.6e-06 55.1 64 39.1
RhsimUnG0101100 Rhododendron simsii HOM05D008219 ORTHO05D009356 3.6e-06 55.1 67 34.3
Ah.07g198450 Amaranthus hybridus HOM05D008762 ORTHO05D011252 4.7e-06 54.7 76 43.4
Rhsim07G0230400 Rhododendron simsii HOM05D008219 ORTHO05D009356 6.1e-06 54.3 63 42.9
Sc14g0003540 Simmondsia chinensis HOM05D009209 ORTHO05D011057 6.1e-06 54.3 87 34.5


User provided reference genes

Program Settings