Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000950 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 1.7e-111 406.0 200 100.0
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 1.6e-82 309.7 201 80.1
CSS0049034 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 3.7e-26 122.5 66 81.8
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 1.1e-17 94.4 138 37.0
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 1.4e-17 94.0 133 39.8
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 3.2e-17 92.8 139 36.0
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 7.8e-16 88.2 138 36.2
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 5.1e-15 85.5 133 36.1
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.1e-14 84.3 140 35.7
Rhsim08G0038200 Rhododendron simsii HOM05D000001 ORTHO05D000003 4.3e-14 82.4 145 40.0
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 5.6e-14 82.0 135 37.8
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 9.5e-14 81.3 145 35.2
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 9.5e-14 81.3 135 36.3
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 4.7e-13 79.0 136 33.1
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 8.1e-13 78.2 132 34.8
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 1.1e-12 77.8 148 36.5
Haze_14967 Corylus avellana HOM05D007742 ORTHO05D004072 1.4e-12 77.4 136 35.3
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 3.1e-12 76.3 139 33.8
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 3.1e-12 76.3 143 33.6
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 8.9e-12 74.7 142 34.5
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 2.6e-11 73.2 134 35.1
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 2.6e-11 73.2 137 32.1
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 5.8e-11 72.0 141 36.9
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 5.8e-11 72.0 137 35.8
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 5.8e-11 72.0 138 34.1
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 1.3e-10 70.9 144 31.9
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 1.7e-10 70.5 131 33.6
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 2.9e-10 69.7 135 36.3
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 3.8e-10 69.3 134 34.3
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 3.8e-10 69.3 134 34.3
Prupe.3G314400 Prunus persica HOM05D007742 ORTHO05D004072 3.8e-10 69.3 152 30.9
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 4.9e-10 68.9 155 29.7
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 4.9e-10 68.9 144 31.9
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 4.9e-10 68.9 133 36.1
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 8.4e-10 68.2 85 36.5
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 8.4e-10 68.2 134 36.6
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 1.9e-09 67.0 153 30.7
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 1.9e-09 67.0 117 32.5
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 3.2e-09 66.2 88 39.8
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 5.4e-09 65.5 171 29.8
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 7.1e-09 65.1 134 33.6
Gorai.001G095300 Gossypium raimondii HOM05D018961 ORTHO05D004072 7.1e-09 65.1 139 30.9
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 9.2e-09 64.7 136 28.7
Gohir.A07G082400 Gossypium hirsutum HOM05D018961 ORTHO05D004072 9.2e-09 64.7 115 33.0
Duzib138G1433 Durio zibethinus HOM05D018961 ORTHO05D004072 1.6e-08 63.9 125 35.2
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 2.1e-08 63.5 136 28.7
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 2.1e-08 63.5 144 30.6
Gohir.D07G088900 Gossypium hirsutum HOM05D018961 ORTHO05D004072 7.8e-08 61.6 115 32.2
Duzib138G0881 Durio zibethinus HOM05D007742 ORTHO05D004072 1.3e-07 60.8 141 29.8
Glyma.19G105400 Glycine max HOM05D007742 ORTHO05D004072 1.3e-07 60.8 173 30.6
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 1.7e-07 60.5 85 35.3
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 1.9e-06 57.0 138 29.0
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 2.5e-06 56.6 88 36.4
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 2.5e-06 56.6 88 36.4
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 5.6e-06 55.5 94 34.0


User provided reference genes

Program Settings