Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000944 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 1.8e-39 165.2 72 100.0
CSS0016713 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 1.3e-26 122.5 59 93.2
CSS0001283 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 3.0e-26 121.3 72 79.2
Rhsim08G0086100 Rhododendron simsii HOM05D002996 ORTHO05D003536 2.4e-23 111.7 57 82.5
Oeu000903.1 Olea europaea HOM05D002996 ORTHO05D003536 6.9e-23 110.2 59 81.4
vmacro18050 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 6.9e-23 110.2 59 79.7
Nitab4.5_0003360g0070 Nicotiana tabacum HOM05D002996 ORTHO05D003536 9.0e-23 109.8 56 82.1
Nitab4.5_0004399g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 9.0e-23 109.8 56 82.1
Oeu047419.3 Olea europaea HOM05D002996 ORTHO05D003536 9.0e-23 109.8 58 81.0
Peaxi162Scf00003g00013 Petunia axillaris HOM05D002996 ORTHO05D003536 9.0e-23 109.8 56 82.1
Nitab4.5_0000465g0030 Nicotiana tabacum HOM05D002996 ORTHO05D003536 1.2e-22 109.4 70 68.6
Sopen03g007520 Solanum pennellii HOM05D002996 ORTHO05D003536 1.5e-22 109.0 56 78.6
GSVIVG01030858001 Vitis vinifera HOM05D002996 ORTHO05D003536 1.5e-22 109.0 59 79.7
CAN.G625.86 Capsicum annuum HOM05D002996 ORTHO05D003536 2.0e-22 108.6 56 82.1
Cc07_g08150 Coffea canephora HOM05D002996 ORTHO05D003536 2.0e-22 108.6 54 83.3
MD17G1256700 Malus domestica HOM05D002996 ORTHO05D003536 2.0e-22 108.6 54 81.5
Solyc02g091410.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 2.0e-22 108.6 56 82.1
Lsat_1_v5_gn_4_154680 Lactuca sativa HOM05D002996 ORTHO05D003536 3.4e-22 107.8 56 78.6
Nn4g24147 Nelumbo nucifera HOM05D002996 ORTHO05D003536 3.4e-22 107.8 58 79.3
Nitab4.5_0002366g0050 Nicotiana tabacum HOM05D002996 ORTHO05D003536 3.4e-22 107.8 56 78.6
vmacro05509 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 3.4e-22 107.8 66 68.2
Cfa007838 Carpinus fangiana HOM05D002996 ORTHO05D003536 4.5e-22 107.5 53 84.9
Haze_14227 Corylus avellana HOM05D002996 ORTHO05D003536 4.5e-22 107.5 53 84.9
SGA_v2.0_scaffold13G06389 Striga asiatica HOM05D002996 ORTHO05D003536 4.5e-22 107.5 53 84.9
PGSC0003DMG401030647 Solanum tuberosum HOM05D002996 ORTHO05D003536 5.8e-22 107.1 56 80.4
Peaxi162Scf00118g00223 Petunia axillaris HOM05D002996 ORTHO05D003536 7.6e-22 106.7 57 77.2
Sopen02g036030 Solanum pennellii HOM05D002996 ORTHO05D003536 7.6e-22 106.7 56 80.4
Solyc03g043660.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 1.0e-21 106.3 56 76.8
Dinv19013 Davidia involucrata HOM05D002996 ORTHO05D000378 1.3e-21 105.9 54 81.5
Thecc.04G120500 Theobroma cacao HOM05D002996 ORTHO05D003536 1.3e-21 105.9 54 79.6
Cpa.g.sc604.6 Carica papaya HOM05D002996 ORTHO05D003536 1.7e-21 105.5 54 79.6
CDE10G0501 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 1.7e-21 105.5 54 79.6
CAN.G473.24 Capsicum annuum HOM05D002996 ORTHO05D003536 2.9e-21 104.8 56 76.8
COL.COLO4_15722 Corchorus olitorius HOM05D002996 ORTHO05D003536 2.9e-21 104.8 53 81.1
Prupe.3G159400 Prunus persica HOM05D002996 ORTHO05D003536 2.9e-21 104.8 54 79.6
ATR0053G010 Amborella trichopoda HOM05D002996 ORTHO05D003536 3.8e-21 104.4 58 74.1
Ciclev10010941m.g Citrus clementina HOM05D002996 ORTHO05D003536 3.8e-21 104.4 59 74.6
Gohir.A11G162100 Gossypium hirsutum HOM05D002996 ORTHO05D003536 3.8e-21 104.4 54 77.8
Gohir.D11G168300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 3.8e-21 104.4 54 77.8
Gorai.007G179800 Gossypium raimondii HOM05D002996 ORTHO05D003536 3.8e-21 104.4 54 77.8
QL11p004079 Quercus lobata HOM05D002996 ORTHO05D003536 3.8e-21 104.4 53 79.2
TAR622G0566 Trochodendron aralioides HOM05D002996 ORTHO05D003536 3.8e-21 104.4 58 74.1
MSTRG.15319 Avicennia marina HOM05D002996 ORTHO05D003536 5.0e-21 104.0 54 81.5
Gohir.A08G052700 Gossypium hirsutum HOM05D002996 ORTHO05D003536 5.0e-21 104.0 54 77.8
Gohir.D08G062300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 5.0e-21 104.0 54 77.8
Gorai.004G064500 Gossypium raimondii HOM05D002996 ORTHO05D003536 5.0e-21 104.0 54 77.8
RcHm_v2.0_Chr7g0220101 Rosa chinensis HOM05D002996 ORTHO05D003536 5.0e-21 104.0 54 75.9
Zm00001eb252510 Zea mays HOM05D002996 ORTHO05D003536 5.0e-21 104.0 58 77.6
Aa31LG5G13900 Aethionema arabicum HOM05D002996 ORTHO05D003536 6.5e-21 103.6 53 79.2
FvH4_5g27890 Fragaria vesca HOM05D002996 ORTHO05D003536 6.5e-21 103.6 54 75.9
FAN04G0036 Fragaria x ananassa HOM05D002996 ORTHO05D003536 6.5e-21 103.6 54 75.9
FAN18G1791 Fragaria x ananassa HOM05D002996 ORTHO05D003536 6.5e-21 103.6 54 75.9
Lj6g0006116 Lotus japonicus HOM05D002996 ORTHO05D003536 6.5e-21 103.6 53 77.4
Lsat_1_v5_gn_2_81521 Lactuca sativa HOM05D002996 ORTHO05D003536 8.4e-21 103.2 53 81.1
Psat5g122480 Pisum sativum HOM05D002996 ORTHO05D003536 8.4e-21 103.2 54 75.9
Eucgr.F02825 Eucalyptus grandis HOM05D002996 ORTHO05D003536 1.1e-20 102.8 53 79.2
Manes.02G074800 Manihot esculenta HOM05D002996 ORTHO05D003536 1.1e-20 102.8 70 67.1
Migut.L00466 Erythranthe guttata HOM05D002996 ORTHO05D003536 1.4e-20 102.4 54 77.8
HanXRQChr09g0262271 Helianthus annuus HOM05D002996 ORTHO05D003536 1.4e-20 102.4 54 75.9
Hund16206 Selenicereus undatus HOM05D002996 ORTHO05D003536 1.9e-20 102.1 59 72.9
TPR.G27148 Trifolium pratense HOM05D002996 ORTHO05D003536 1.9e-20 102.1 54 74.1
MSTRG.3518 Avicennia marina HOM05D002996 ORTHO05D003536 2.5e-20 101.7 53 77.4
CiPaw.03G068800 Carya illinoinensis HOM05D002996 ORTHO05D003536 2.5e-20 101.7 53 77.4
Duzib133G0038 Durio zibethinus HOM05D002996 ORTHO05D003536 2.5e-20 101.7 54 74.1
Medtr3g067690 Medicago truncatula HOM05D002996 ORTHO05D003536 2.5e-20 101.7 54 74.1
Potri.017G128300 Populus trichocarpa HOM05D002996 ORTHO05D003536 2.5e-20 101.7 57 73.7
Sabra17G0107000 Salix brachista HOM05D002996 ORTHO05D003536 2.5e-20 101.7 57 71.9
Atru.chr1.1814 Acer truncatum HOM05D002996 ORTHO05D003536 3.2e-20 101.3 54 77.8
EL10Ac2g04480 Beta vulgaris HOM05D002996 ORTHO05D003536 3.2e-20 101.3 59 71.2
Migut.H00264 Erythranthe guttata HOM05D002996 ORTHO05D003536 3.2e-20 101.3 59 71.2
MBI16_g14303_MAGBIO Magnolia biondii HOM05D002996 ORTHO05D003536 3.2e-20 101.3 53 77.4
Manes.01G115900 Manihot esculenta HOM05D002996 ORTHO05D003536 3.2e-20 101.3 54 77.8
Rhsim10G0079400 Rhododendron simsii HOM05D002996 ORTHO05D003536 3.2e-20 101.3 57 75.4
Sc10g0000830 Simmondsia chinensis HOM05D002996 ORTHO05D003536 3.2e-20 101.3 59 69.5
Carub.0003s0254 Capsella rubella HOM05D002996 ORTHO05D003536 4.2e-20 100.9 53 75.5
Duzib211G0161 Durio zibethinus HOM05D002996 ORTHO05D003536 4.2e-20 100.9 54 75.9
HanXRQChr07g0193641 Helianthus annuus HOM05D002996 ORTHO05D003536 4.2e-20 100.9 53 75.5
Os02g0712000 Oryza sativa ssp. japonica HOM05D002996 ORTHO05D003536 4.2e-20 100.9 58 72.4
AL3G13060 Arabidopsis lyrata HOM05D002996 ORTHO05D003536 5.5e-20 100.5 53 75.5
AT3G03380 Arabidopsis thaliana HOM05D002996 ORTHO05D003536 5.5e-20 100.5 53 75.5
BcaC05g30278 Brassica carinata HOM05D002996 ORTHO05D003536 5.5e-20 100.5 53 75.5
BcaC09g47743 Brassica carinata HOM05D002996 ORTHO05D003536 5.5e-20 100.5 53 75.5
A05p43840 Brassica napus HOM05D002996 ORTHO05D003536 5.5e-20 100.5 53 75.5
A06p26370 Brassica napus HOM05D002996 ORTHO05D003536 5.5e-20 100.5 53 75.5
BNapus_Darmor_BZH_scaffold_162p00130 Brassica napus HOM05D002996 ORTHO05D003536 5.5e-20 100.5 53 75.5
BNapus_Darmor_BZH_scaffold_78p00120 Brassica napus HOM05D002996 ORTHO05D003536 5.5e-20 100.5 53 75.5
BolC1t05834H Brassica oleracea HOM05D002996 ORTHO05D003536 5.5e-20 100.5 53 75.5
BraA05t23122Z Brassica rapa HOM05D002996 ORTHO05D003536 5.5e-20 100.5 53 75.5
CARHR077410 Cardamine hirsuta HOM05D002996 ORTHO05D003536 5.5e-20 100.5 53 75.5
SalBow7G0652 Salvia bowleyana HOM05D002996 ORTHO05D003536 5.5e-20 100.5 53 79.2
Sp3g02390 Schrenkiella parvula HOM05D002996 ORTHO05D003536 5.5e-20 100.5 53 75.5
Glyma.11G218000 Glycine max HOM05D002996 ORTHO05D003536 7.1e-20 100.1 54 74.1
ClCG05G010970 Citrullus lanatus HOM05D002996 ORTHO05D003536 9.3e-20 99.8 54 75.9
Rhsim10G0079500 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.2e-19 99.4 60 70.0
BcaC05g30533 Brassica carinata HOM05D002996 ORTHO05D003536 1.6e-19 99.0 53 73.6
C05p63430 Brassica napus HOM05D002996 ORTHO05D003536 1.6e-19 99.0 53 73.6
BolC5t35007H Brassica oleracea HOM05D002996 ORTHO05D003536 1.6e-19 99.0 53 73.6
MELO3C020288.2 Cucumis melo HOM05D002996 ORTHO05D003536 1.6e-19 99.0 54 75.9
Thhalv10019951m.g Eutrema salsugineum HOM05D002996 ORTHO05D003536 1.6e-19 99.0 53 73.6
vmacro05502 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 1.6e-19 99.0 54 72.2
PSO017G4487 Papaver somniferum HOM05D002996 ORTHO05D003536 2.1e-19 98.6 57 68.4
DCAR_010737 Daucus carota HOM05D002996 ORTHO05D003536 2.7e-19 98.2 59 72.9
PGR004G1736 Punica granatum HOM05D002996 ORTHO05D003536 2.7e-19 98.2 53 73.6
Sed0026936 Sechium edule HOM05D002996 ORTHO05D003536 2.7e-19 98.2 54 74.1
VMungo1383G2581 Vigna mungo HOM05D002996 ORTHO05D003536 2.7e-19 98.2 54 72.2
arahy.Tifrunner.gnm1.ann1.RDL55E Arachis hypogaea HOM05D002996 ORTHO05D003536 3.5e-19 97.8 53 73.6
BraA01t04583Z Brassica rapa HOM05D002996 ORTHO05D003536 3.5e-19 97.8 53 73.6
Lalb_Chr15g0084771 Lupinus albus HOM05D002996 ORTHO05D003536 3.5e-19 97.8 54 68.5
SMO361G0084 Selaginella moellendorffii HOM05D002996 ORTHO05D003536 3.5e-19 97.8 55 65.5
TAR374G0579 Trochodendron aralioides HOM05D002996 ORTHO05D003536 3.5e-19 97.8 58 70.7
Glyma.18G039000 Glycine max HOM05D002996 ORTHO05D003536 6.1e-19 97.1 54 70.4
Phvul.001G231700 Phaseolus vulgaris HOM05D002996 ORTHO05D003536 6.1e-19 97.1 54 70.4
Ca_08163_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 7.9e-19 96.7 54 70.4
Medtr3g067695 Medicago truncatula HOM05D002996 ORTHO05D003536 7.9e-19 96.7 54 68.5
HPP92_003793 Vanilla planifolia HOM05D002996 ORTHO05D003536 7.9e-19 96.7 53 77.4
Actinidia17657 Actinidia chinensis HOM05D002996 ORTHO05D003536 1.0e-18 96.3 46 82.6
Ah.16g101290 Amaranthus hybridus HOM05D002996 ORTHO05D003536 1.3e-18 95.9 54 72.2
AUR62023190 Chenopodium quinoa HOM05D002996 ORTHO05D003536 1.8e-18 95.5 59 67.8
AUR62023237 Chenopodium quinoa HOM05D002996 ORTHO05D003536 1.8e-18 95.5 59 67.8
PSO478G4946 Papaver somniferum HOM05D002996 ORTHO05D003536 2.3e-18 95.1 57 66.7
TWI77G0049 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 3.0e-18 94.7 70 55.7
CANSAT78G2389 Cannabis sativa HOM05D002996 ORTHO05D003536 3.9e-18 94.4 52 73.1
SEGI_30841 Sequoiadendron giganteum HOM05D002996 ORTHO05D003536 3.9e-18 94.4 53 71.7
Manes.01G116000 Manihot esculenta HOM05D002996 ORTHO05D003536 5.1e-18 94.0 69 58.0
ECA232G3169 Erigeron canadensis HOM05D002996 ORTHO05D003536 1.5e-17 92.4 53 69.8
Sabra04G0059000 Salix brachista HOM05D002996 ORTHO05D003536 1.5e-17 92.4 49 75.5
Aqoxy3G00131_Aqoxy3G00132 Aquilegia oxysepala HOM05D002996 ORTHO05D003536 1.9e-17 92.0 52 71.2
Potri.004G088600 Populus trichocarpa HOM05D002996 ORTHO05D003536 3.3e-17 91.3 49 75.5
Pp3c2_7790 Physcomitrium patens HOM05D002996 ORTHO05D003536 4.3e-17 90.9 52 69.2
TWI74G1665 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 4.3e-17 90.9 53 64.2
Mapoly0003s0272 Marchantia polymorpha HOM05D002996 ORTHO05D003536 7.4e-17 90.1 68 60.3
THA.LOC104827237 Tarenaya hassleriana HOM05D002996 ORTHO05D003536 2.8e-16 88.2 52 67.3
PSO339G5742 Papaver somniferum HOM05D002996 ORTHO05D003536 8.2e-16 86.7 53 64.2
Potri.004G088700 Populus trichocarpa HOM05D002996 ORTHO05D003536 1.4e-15 85.9 54 64.8
Pp3c1_28480 Physcomitrium patens HOM05D002996 ORTHO05D003536 1.8e-15 85.5 51 66.7
SalBow1G7030 Salvia bowleyana HOM05D002996 ORTHO05D003536 3.1e-15 84.7 53 66.0
Sabra04G0059100 Salix brachista HOM05D002996 ORTHO05D003536 4.1e-15 84.3 54 63.0
PSO170G1396 Papaver somniferum HOM05D002996 ORTHO05D003536 2.0e-14 82.0 56 57.1
PSO407G0242 Papaver somniferum HOM05D002996 ORTHO05D003536 2.0e-14 82.0 56 58.9
ECA238G4747 Erigeron canadensis HOM05D002996 ORTHO05D003536 1.4e-12 75.9 36 83.3
Cre03.g180650 Chlamydomonas reinhardtii HOM05D002996 ORTHO05D003536 2.3e-10 68.6 46 58.7
vmacro05505 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 3.0e-10 68.2 35 77.1
MCO10G011 Micromonas commoda HOM05D002996 ORTHO05D003536 6.7e-10 67.0 36 66.7
CSS0002683 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 2.0e-06 55.5 26 92.3


User provided reference genes

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