Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000942 Camellia sinensis var. sinensis HOM05D006358 ORTHO05D008185 1.0e-24 115.9 58 100.0
Actinidia01838 Actinidia chinensis HOM05D006358 ORTHO05D008185 7.5e-20 99.8 56 82.1
vmacro21759 Vaccinium macrocarpon HOM05D006358 ORTHO05D008185 8.3e-19 96.3 51 86.3
Rhsim13G0227500 Rhododendron simsii HOM05D006358 ORTHO05D009383 1.4e-18 95.5 51 84.3
Dinv36328 Davidia involucrata HOM05D006358 ORTHO05D008185 1.9e-18 95.1 51 86.3
Lj2A674T44 Lonicera japonica HOM05D006358 ORTHO05D008185 3.2e-18 94.4 56 78.6
TAR633G2634 Trochodendron aralioides HOM05D006358 ORTHO05D008185 7.0e-18 93.2 56 75.0
HanXRQChr11g0345451 Helianthus annuus HOM05D006358 ORTHO05D008185 1.2e-17 92.4 56 76.8
Aqoxy1G00024 Aquilegia oxysepala HOM05D006358 ORTHO05D008185 1.6e-17 92.0 51 82.4
Lsat_1_v5_gn_1_68460 Lactuca sativa HOM05D006358 ORTHO05D008185 1.6e-17 92.0 50 82.0
Hma1.2p1_0050F.1_g029070 Hydrangea macrophylla HOM05D006358 ORTHO05D008185 2.7e-17 91.3 56 71.4
Manes.03G089800 Manihot esculenta HOM05D006358 ORTHO05D008185 4.6e-17 90.5 56 75.0
DCAR_024375 Daucus carota HOM05D006358 ORTHO05D008185 1.0e-16 89.4 50 80.0
ECA248G2469 Erigeron canadensis HOM05D006358 ORTHO05D008185 1.7e-16 88.6 56 71.4
Prupe.6G013900 Prunus persica HOM05D006358 ORTHO05D008185 1.7e-16 88.6 56 71.4
EL10Ac4g10334 Beta vulgaris HOM05D006358 ORTHO05D008185 2.3e-16 88.2 50 78.0
PSO384G4606 Papaver somniferum HOM05D006358 ORTHO05D008185 2.3e-16 88.2 56 71.4
Sabra01G0008700 Salix brachista HOM05D006358 ORTHO05D008185 2.3e-16 88.2 56 73.2
CiPaw.14G129700 Carya illinoinensis HOM05D006358 ORTHO05D008185 3.0e-16 87.8 51 80.4
AUR62000042 Chenopodium quinoa HOM05D006358 ORTHO05D008185 3.9e-16 87.4 50 78.0
AUR62019212 Chenopodium quinoa HOM05D006358 ORTHO05D008185 3.9e-16 87.4 50 78.0
Cc01_g03170 Coffea canephora HOM05D006358 ORTHO05D008185 3.9e-16 87.4 56 71.4
PSO339G4609 Papaver somniferum HOM05D006358 ORTHO05D008185 3.9e-16 87.4 51 76.5
Potri.001G011700 Populus trichocarpa HOM05D006358 ORTHO05D008185 3.9e-16 87.4 51 78.4
QL01p009947 Quercus lobata HOM05D006358 ORTHO05D008185 3.9e-16 87.4 51 76.5
Sc09g0000330 Simmondsia chinensis HOM05D006358 ORTHO05D008185 5.0e-16 87.0 50 78.0
Ciclev10015496m.g Citrus clementina HOM05D006358 ORTHO05D008185 1.1e-15 85.9 56 67.9
Peaxi162Scf00192g00019 Petunia axillaris HOM05D006358 ORTHO05D008185 1.1e-15 85.9 50 78.0
Hund07562 Selenicereus undatus HOM05D006358 ORTHO05D008185 1.5e-15 85.5 50 76.0
TWI34G0094 Tripterygium wilfordii HOM05D006358 ORTHO05D008185 1.5e-15 85.5 51 76.5
CANSAT54G1685 Cannabis sativa HOM05D006358 ORTHO05D008185 1.9e-15 85.1 57 70.2
Cfa009639 Carpinus fangiana HOM05D006358 ORTHO05D008185 2.5e-15 84.7 51 78.4
ClCG02G023710 Citrullus lanatus HOM05D006358 ORTHO05D008185 2.5e-15 84.7 51 76.5
CAN.G140.8 Capsicum annuum HOM05D006358 ORTHO05D008185 4.3e-15 84.0 50 76.0
MD11G1015800 Malus domestica HOM05D006358 ORTHO05D008185 4.3e-15 84.0 51 74.5
Cpa.g.sc1127.2 Carica papaya HOM05D006358 ORTHO05D008185 5.6e-15 83.6 51 76.5
Eucgr.B02608 Eucalyptus grandis HOM05D006358 ORTHO05D008185 5.6e-15 83.6 56 73.2
PGR119G1893 Punica granatum HOM05D006358 ORTHO05D008185 5.6e-15 83.6 56 67.9
Nitab4.5_0005041g0010 Nicotiana tabacum HOM05D006358 ORTHO05D008185 7.3e-15 83.2 50 74.0
Oeu058541.2 Olea europaea HOM05D006358 ORTHO05D008185 7.3e-15 83.2 51 74.5
Solyc01g006330.4 Solanum lycopersicum HOM05D006358 ORTHO05D008185 7.3e-15 83.2 50 78.0
Sopen01g002330 Solanum pennellii HOM05D006358 ORTHO05D008185 7.3e-15 83.2 50 78.0
Nitab4.5_0003436g0040 Nicotiana tabacum HOM05D006358 ORTHO05D008185 9.5e-15 82.8 50 72.0
GSVIVG01025367001 Vitis vinifera HOM05D006358 ORTHO05D008185 1.2e-14 82.4 51 80.4
CsaV3_4G023700 Cucumis sativus L. HOM05D006358 ORTHO05D008185 1.6e-14 82.0 51 76.5
Lj5g0002595 Lotus japonicus HOM05D006358 ORTHO05D008185 1.6e-14 82.0 51 72.5
TPR.G10386 Trifolium pratense HOM05D006358 ORTHO05D008185 2.1e-14 81.6 54 70.4
FAN11G2908 Fragaria x ananassa HOM05D000259 ORTHO05D008185 2.8e-14 81.3 51 68.6
PGSC0003DMG400032149 Solanum tuberosum HOM05D006358 ORTHO05D008185 2.8e-14 81.3 50 76.0
arahy.Tifrunner.gnm1.ann1.TN3NK4 Arachis hypogaea HOM05D006358 ORTHO05D008185 3.6e-14 80.9 55 63.6
Glyma.20G244500 Glycine max HOM05D006358 ORTHO05D008185 3.6e-14 80.9 51 66.7
Sed0014420 Sechium edule HOM05D006358 ORTHO05D008185 3.6e-14 80.9 51 74.5
Thecc.09G216800 Theobroma cacao HOM05D006358 ORTHO05D008185 3.6e-14 80.9 55 72.7
MELO3C014648.2 Cucumis melo HOM05D006358 ORTHO05D008185 4.7e-14 80.5 51 74.5
Ca_11387_v3 Cicer arietinum L. HOM05D006358 ORTHO05D008185 6.2e-14 80.1 51 68.6
Haze_23007 Corylus avellana HOM05D006358 ORTHO05D008185 6.2e-14 80.1 46 80.4
Hma1.2p1_0238F.1_g099790 Hydrangea macrophylla HOM05D006358 ORTHO05D008185 6.2e-14 80.1 50 72.0
FvH4_3g44350 Fragaria vesca HOM05D006358 ORTHO05D008185 8.1e-14 79.7 51 68.6
FAN16G0252 Fragaria x ananassa HOM05D006358 ORTHO05D008185 8.1e-14 79.7 51 68.6
FAN21G1333 Fragaria x ananassa HOM05D000259 ORTHO05D008185 8.1e-14 79.7 51 68.6
Medtr1g116320 Medicago truncatula HOM05D006358 ORTHO05D008185 8.1e-14 79.7 51 68.6
Glyma.10G294800 Glycine max HOM05D006358 ORTHO05D008185 1.1e-13 79.3 51 66.7
Lalb_Chr02g0144221 Lupinus albus HOM05D006358 ORTHO05D008185 1.4e-13 79.0 51 66.7
FAN25G3418 Fragaria x ananassa HOM05D000259 ORTHO05D008185 1.8e-13 78.6 51 66.7
RcHm_v2.0_Chr5g0080731 Rosa chinensis HOM05D006358 ORTHO05D008185 1.8e-13 78.6 51 66.7
Gorai.004G092800 Gossypium raimondii HOM05D006358 ORTHO05D008185 3.1e-13 77.8 55 72.7
Migut.D00538 Erythranthe guttata HOM05D006358 ORTHO05D008185 4.0e-13 77.4 50 66.0
Gohir.A08G078500 Gossypium hirsutum HOM05D006358 ORTHO05D008185 4.0e-13 77.4 55 72.7
SGA_v2.0_scaffold1G00759 Striga asiatica HOM05D006358 ORTHO05D008185 4.0e-13 77.4 50 68.0
THA.LOC104810430 Tarenaya hassleriana HOM05D006358 ORTHO05D008185 5.2e-13 77.0 56 62.5
VMungo0720G2736 Vigna mungo HOM05D006358 ORTHO05D008185 1.2e-12 75.9 51 62.7
Duzib150G0556 Durio zibethinus HOM05D006358 ORTHO05D008185 1.5e-12 75.5 51 74.5
Aa31LG10G3410 Aethionema arabicum HOM05D006358 ORTHO05D008185 2.0e-12 75.1 51 64.7
Cpa.g.sc1127.1 Carica papaya HOM05D006358 ORTHO05D008185 2.0e-12 75.1 50 66.0
COL.COLO4_10429 Corchorus olitorius HOM05D006358 ORTHO05D008185 2.6e-12 74.7 51 70.6
Psat6g240320 Pisum sativum HOM05D003840 ORTHO05D004565 2.6e-12 74.7 51 62.7
Ah.06g193120 Amaranthus hybridus HOM05D000044 ORTHO05D000051 4.4e-12 73.9 44 72.7
AT1G51110 Arabidopsis thaliana HOM05D006358 ORTHO05D008185 4.4e-12 73.9 56 58.9
Sp1g37840 Schrenkiella parvula HOM05D006358 ORTHO05D008185 4.4e-12 73.9 51 66.7
AL1G58910 Arabidopsis lyrata HOM05D006358 ORTHO05D008185 5.8e-12 73.6 56 58.9
A06p02670 Brassica napus HOM05D006358 ORTHO05D008185 7.5e-12 73.2 51 64.7
BraA06t23476Z Brassica rapa HOM05D006358 ORTHO05D008185 7.5e-12 73.2 51 64.7
CARHR041130 Cardamine hirsuta HOM05D006358 ORTHO05D008185 7.5e-12 73.2 51 62.7
Thhalv10011532m.g Eutrema salsugineum HOM05D006358 ORTHO05D008185 7.5e-12 73.2 51 64.7
Carub.0001s4002 Capsella rubella HOM05D006358 ORTHO05D008185 9.8e-12 72.8 56 58.9
Glyma.03G107232 Glycine max HOM05D006358 ORTHO05D000607 9.8e-12 72.8 46 67.4
Nn2g15694 Nelumbo nucifera HOM05D006358 ORTHO05D008185 9.8e-12 72.8 51 64.7
Phvul.007G005400 Phaseolus vulgaris HOM05D006358 ORTHO05D008185 9.8e-12 72.8 51 64.7
BcaB07g33557 Brassica carinata HOM05D006358 ORTHO05D008185 1.3e-11 72.4 51 64.7
unitig_0.g179 Utricularia gibba HOM05D006358 ORTHO05D008185 1.7e-11 72.0 50 60.0
BcaC08g43283 Brassica carinata HOM05D006358 ORTHO05D008185 4.9e-11 70.5 51 60.8
BolC6t35742H Brassica oleracea HOM05D006358 ORTHO05D008185 4.9e-11 70.5 51 60.8
BcaC08g43281 Brassica carinata HOM05D006358 ORTHO05D008185 6.4e-11 70.1 51 62.7
C06p06310 Brassica napus HOM05D006358 ORTHO05D008185 6.4e-11 70.1 51 62.7
BolC6t35740H Brassica oleracea HOM05D006358 ORTHO05D008185 6.4e-11 70.1 51 62.7
C06p06330 Brassica napus HOM05D000466 ORTHO05D000331 6.6e-08 60.1 46 56.5
ATR0807G171 Amborella trichopoda HOM05D006358 ORTHO05D008185 2.1e-06 55.1 50 46.0


User provided reference genes

Program Settings