Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000935 Camellia sinensis var. sinensis HOM05D004923 ORTHO05D005940 2.0e-302 1042.0 654 100.0
Actinidia19810 Actinidia chinensis HOM05D004923 ORTHO05D005940 8.8e-133 478.4 655 54.2
Dinv40234 Davidia involucrata HOM05D004923 ORTHO05D005940 6.7e-125 452.2 598 49.0
Rhsim05G0146200 Rhododendron simsii HOM05D004923 ORTHO05D005940 1.1e-124 451.4 626 54.2
Hma1.2p1_0702F.1_g206060 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 1.0e-117 428.3 627 45.0
Sopen01g053000 Solanum pennellii HOM05D004923 ORTHO05D005940 1.2e-110 404.8 635 41.7
Hma1.2p1_2453F.1_g322410 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 3.6e-110 403.3 631 43.6
Solyc01g110960.4 Solanum lycopersicum HOM05D004923 ORTHO05D005940 1.7e-99 367.9 600 40.7
Cc02_g32730 Coffea canephora HOM05D004923 ORTHO05D005940 5.8e-92 342.8 657 39.4
MSTRG.12109 Avicennia marina HOM05D004923 ORTHO05D005940 3.7e-91 340.1 656 37.3
PGSC0003DMG400001646 Solanum tuberosum HOM05D004923 ORTHO05D005940 6.4e-91 339.3 635 40.5
CiPaw.07G012700 Carya illinoinensis HOM05D004923 ORTHO05D005940 1.5e-87 328.2 635 42.2
Oeu020434.1 Olea europaea HOM05D004923 ORTHO05D005940 9.5e-87 325.5 633 43.9
Cfa006523 Carpinus fangiana HOM05D004923 ORTHO05D005940 4.0e-85 320.1 638 37.1
Haze_04263 Corylus avellana HOM05D004923 ORTHO05D005940 1.2e-84 318.5 627 38.3
TAR362G1085 Trochodendron aralioides HOM05D004923 ORTHO05D005940 1.9e-74 284.6 750 31.9
SGA_v2.0_scaffold104G30165 Striga asiatica HOM05D004923 ORTHO05D005940 2.7e-73 280.8 622 34.2
SalBow6G2889 Salvia bowleyana HOM05D004923 ORTHO05D005940 1.7e-67 261.5 627 34.9
QL03p002854 Quercus lobata HOM05D004923 ORTHO05D005940 1.6e-62 245.0 625 34.9
QL03p003582 Quercus lobata HOM05D004923 ORTHO05D005940 3.4e-60 237.3 625 35.4
TWI56G0946 Tripterygium wilfordii HOM05D004923 ORTHO05D005940 4.2e-58 230.3 630 31.9
Ciclev10000602m.g Citrus clementina HOM05D004923 ORTHO05D005940 1.2e-57 228.8 632 32.8
Gohir.A08G212800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 3.5e-57 227.3 646 34.4
Lalb_Chr02g0148481 Lupinus albus HOM05D004923 ORTHO05D005940 2.3e-56 224.6 628 31.4
Manes.09G161700 Manihot esculenta HOM05D004923 ORTHO05D005940 5.1e-56 223.4 638 32.4
HanXRQChr05g0158391 Helianthus annuus HOM05D004923 ORTHO05D005940 1.1e-55 222.2 633 31.4
Sabra05G0039600 Salix brachista HOM05D004923 ORTHO05D005940 3.6e-54 217.2 656 32.3
Nn4g26097 Nelumbo nucifera HOM05D004923 ORTHO05D005940 2.4e-53 214.5 723 28.2
CAN.G1329.24 Capsicum annuum HOM05D004923 ORTHO05D005940 6.9e-53 213.0 654 35.2
Gohir.D08G229800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 4.9e-51 206.8 660 33.2
Gorai.004G244000 Gossypium raimondii HOM05D004923 ORTHO05D005940 8.4e-51 206.1 660 33.2
AUR62000899 Chenopodium quinoa HOM05D004923 ORTHO05D005940 1.4e-50 205.3 644 30.6
GSVIVG01022015001 Vitis vinifera HOM05D004923 ORTHO05D005940 1.4e-50 205.3 651 32.0
Sc06g0003440 Simmondsia chinensis HOM05D004923 ORTHO05D005940 5.4e-50 203.4 642 29.0
Prupe.6G332700 Prunus persica HOM05D004923 ORTHO05D005940 1.2e-49 202.2 652 34.5
Potri.013G028600 Populus trichocarpa HOM05D004923 ORTHO05D005940 1.0e-48 199.1 612 35.8
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 1.3e-48 198.7 639 28.5
Thecc.05G297900 Theobroma cacao HOM05D004923 ORTHO05D005940 1.8e-48 198.4 662 32.2
AUR62005075 Chenopodium quinoa HOM05D004923 ORTHO05D005940 1.9e-47 194.9 649 31.1
Duzib177G0588 Durio zibethinus HOM05D004923 ORTHO05D005940 2.5e-47 194.5 665 34.3
Lj9P678T27 Lonicera japonica HOM05D004923 ORTHO05D005940 4.3e-47 193.7 438 36.8
Nitab4.5_0000003g0420 Nicotiana tabacum HOM05D004923 ORTHO05D005940 7.4e-47 193.0 631 34.5
Migut.A01112 Erythranthe guttata HOM05D004923 ORTHO05D005940 3.7e-46 190.7 622 31.4
CiPaw.08G168100 Carya illinoinensis HOM05D004923 ORTHO05D005940 8.1e-46 189.5 234 46.2
MELO3C004316.2 Cucumis melo HOM05D004923 ORTHO05D005940 8.1e-46 189.5 661 28.7
DCAR_029454 Daucus carota HOM05D004923 ORTHO05D005940 1.4e-45 188.7 651 35.8
CARHR185930 Cardamine hirsuta HOM05D004923 ORTHO05D005940 3.1e-45 187.6 635 28.2
Lj8C55T15 Lonicera japonica HOM05D004923 ORTHO05D005940 4.0e-45 187.2 328 40.2
Oeu019603.1 Olea europaea HOM05D004923 ORTHO05D005940 2.6e-44 184.5 316 47.8
Sp3g03950 Schrenkiella parvula HOM05D004923 ORTHO05D005940 2.2e-43 181.4 635 32.1
arahy.Tifrunner.gnm1.ann1.96LETV Arachis hypogaea HOM05D004923 ORTHO05D005940 6.4e-43 179.9 664 27.4
THA.LOC104818671 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 8.4e-43 179.5 635 31.7
BcaNung04359 Brassica carinata HOM05D004923 ORTHO05D005940 4.6e-41 173.7 627 29.5
MBI18_g16961_MAGBIO Magnolia biondii HOM05D004923 ORTHO05D005940 1.3e-40 172.2 663 34.4
HanXRQChr15g0493471 Helianthus annuus HOM05D004923 ORTHO05D005940 1.1e-39 169.1 638 28.4
Sp2g20550 Schrenkiella parvula HOM05D004923 ORTHO05D005940 1.5e-39 168.7 636 31.0
Lsat_1_v5_gn_5_38100 Lactuca sativa HOM05D004923 ORTHO05D005940 1.9e-39 168.3 651 27.6
Sabra13G0028900 Salix brachista HOM05D004923 ORTHO05D005940 1.9e-39 168.3 628 32.5
AL3G15510 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 2.5e-39 167.9 627 30.5
Sed0008414 Sechium edule HOM05D004923 ORTHO05D005940 4.3e-39 167.2 629 28.0
Lj5g0013750 Lotus japonicus HOM05D004923 ORTHO05D005940 9.6e-39 166.0 725 31.0
arahy.Tifrunner.gnm1.ann1.VPW6I2 Arachis hypogaea HOM05D004923 ORTHO05D005940 1.6e-38 165.2 651 26.1
Peaxi162Scf00016g10236 Petunia axillaris HOM05D004923 ORTHO05D005940 1.6e-38 165.2 624 33.8
Nitab4.5_0008768g0010 Nicotiana tabacum HOM05D004923 ORTHO05D005940 2.8e-38 164.5 653 33.2
CANSAT54G1324 Cannabis sativa HOM05D004923 ORTHO05D005940 3.7e-38 164.1 740 30.4
FAN09G1938 Fragaria x ananassa HOM05D004923 ORTHO05D005940 3.1e-37 161.0 681 28.8
AT5G27330 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 6.9e-37 159.8 655 26.7
AT3G05130 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 9.0e-37 159.5 627 32.5
PGR083G0910 Punica granatum HOM05D004923 ORTHO05D005940 1.5e-36 158.7 626 27.6
Glyma.20G230700 Glycine max HOM05D004923 ORTHO05D005940 2.6e-36 157.9 632 32.1
unitig_8.g3020 Utricularia gibba HOM05D004923 ORTHO05D005940 3.4e-36 157.5 624 26.0
THA.LOC104821702 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 7.6e-36 156.4 647 31.5
RcHm_v2.0_Chr3g0453461 Rosa chinensis HOM05D004923 ORTHO05D005940 1.0e-35 156.0 626 29.4
Eucgr.B02029 Eucalyptus grandis HOM05D004923 ORTHO05D005940 1.7e-35 155.2 624 26.1
Glyma.10G157900 Glycine max HOM05D004923 ORTHO05D005940 1.7e-35 155.2 627 27.0
Gohir.A11G260600 Gossypium hirsutum HOM05D004923 ORTHO05D005940 2.9e-35 154.5 629 26.1
AL6G39740 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 2.7e-33 147.9 626 32.1
Cpa.g.sc84.119 Carica papaya HOM05D004923 ORTHO05D005940 2.7e-33 147.9 637 26.8
Carub.0006s2521 Capsella rubella HOM05D004923 ORTHO05D005940 3.5e-33 147.5 626 30.8
FAN02G0211 Fragaria x ananassa HOM05D004923 ORTHO05D005940 7.9e-33 146.4 666 28.1
C05p62100 Brassica napus HOM05D004923 ORTHO05D005940 1.3e-32 145.6 635 29.1
BolC5t34868H Brassica oleracea HOM05D004923 ORTHO05D005940 1.3e-32 145.6 635 29.1
Nn4g26098 Nelumbo nucifera HOM05D004923 ORTHO05D005940 3.9e-32 144.1 719 25.7
Atru.chr2.532 Acer truncatum HOM05D004923 ORTHO05D005940 3.3e-31 141.0 684 32.6
C07p40590 Brassica napus HOM05D004923 ORTHO05D005940 7.4e-31 139.8 627 26.2
arahy.Tifrunner.gnm1.ann1.S9CKM7 Arachis hypogaea HOM05D004923 ORTHO05D005940 2.2e-30 138.3 641 25.1
COL.COLO4_13559 Corchorus olitorius HOM05D004923 ORTHO05D005940 2.4e-29 134.8 428 37.1
CsaV3_2G004820 Cucumis sativus L. HOM05D004923 ORTHO05D005940 2.4e-29 134.8 664 26.4
FAN14G0846 Fragaria x ananassa HOM05D004923 ORTHO05D005940 5.3e-29 133.7 626 27.2
Ah.04g159880 Amaranthus hybridus HOM05D004923 ORTHO05D005940 4.5e-28 130.6 678 25.2
Potri.005G040500 Populus trichocarpa HOM05D004923 ORTHO05D005940 5.9e-28 130.2 618 28.6
MD12G1227100 Malus domestica HOM05D004923 ORTHO05D005940 7.7e-28 129.8 627 28.7
Gohir.D11G270900 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.7e-27 128.6 656 27.9
FAN05G5260 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.2e-27 128.3 626 26.8
Phvul.007G183300 Phaseolus vulgaris HOM05D004923 ORTHO05D005940 2.9e-27 127.9 393 32.1
Carub.0003s0437 Capsella rubella HOM05D004923 ORTHO05D005940 3.8e-27 127.5 627 29.3
Thhalv10003823m.g Eutrema salsugineum HOM05D004923 ORTHO05D005940 3.8e-27 127.5 635 27.7
FAN05G2617 Fragaria x ananassa HOM05D004923 ORTHO05D005940 5.0e-27 127.1 626 26.4
Aqoxy2G03170 Aquilegia oxysepala HOM05D004923 ORTHO05D005940 8.5e-27 126.3 676 23.7
FvH4_6g04961 Fragaria vesca HOM05D004923 ORTHO05D005940 2.5e-26 124.8 626 26.7
MD04G1212300 Malus domestica HOM05D004923 ORTHO05D005940 5.1e-24 117.1 659 25.6
ECA246G1289 Erigeron canadensis HOM05D004923 ORTHO05D005940 1.5e-23 115.5 764 23.6
Gorai.007G291400 Gossypium raimondii HOM05D004923 ORTHO05D005940 4.3e-23 114.0 656 27.1
Medtr1g082215 Medicago truncatula HOM05D004923 ORTHO05D005940 2.2e-22 111.7 703 28.3
BcaNung02477 Brassica carinata HOM05D004923 ORTHO05D005940 4.8e-22 110.5 628 27.2
CAN.G65.101 Capsicum annuum HOM05D004923 ORTHO05D005940 3.1e-21 107.8 155 42.6
Ca_10079_v3 Cicer arietinum L. HOM05D004923 ORTHO05D005940 3.1e-21 107.8 179 37.4
VMungo0720G2495 Vigna mungo HOM05D004923 ORTHO05D005940 6.9e-21 106.7 630 27.0
CARHR079450 Cardamine hirsuta HOM05D004923 ORTHO05D005940 9.1e-21 106.3 235 31.9
Aa31LG11G9060 Aethionema arabicum HOM05D004923 ORTHO05D005940 1.2e-20 105.9 649 31.3
Peaxi162Scf00351g00530 Petunia axillaris HOM05D004923 ORTHO05D005940 1.2e-20 105.9 281 34.9
BraA05t23008Z Brassica rapa HOM05D004923 ORTHO05D005940 1.7e-19 102.1 626 26.2
ECA233G0604 Erigeron canadensis HOM05D004923 ORTHO05D005940 2.9e-19 101.3 619 23.3
Peaxi162Scf00413g00516 Petunia axillaris HOM05D004923 ORTHO05D005940 5.0e-19 100.5 265 32.8
TPR.G2744 Trifolium pratense HOM05D004923 ORTHO05D005940 5.0e-19 100.5 162 40.7
Psat6g148400 Pisum sativum HOM05D004923 ORTHO05D005940 8.5e-19 99.8 152 39.5
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 5.5e-18 97.1 235 33.2
Manes.08G124600 Manihot esculenta HOM05D004923 ORTHO05D005940 3.9e-16 90.9 868 22.8
PSO170G6876 Papaver somniferum HOM05D004923 ORTHO05D005940 1.5e-15 89.0 546 24.0
PSO302G0039 Papaver somniferum HOM05D004923 ORTHO05D005940 3.3e-15 87.8 136 39.0
A05p42440 Brassica napus HOM05D004923 ORTHO05D005940 7.4e-15 86.7 667 28.3
PSO151G0007 Papaver somniferum HOM05D004923 ORTHO05D005940 2.4e-13 81.6 589 27.5
PSO151G0141 Papaver somniferum HOM05D004923 ORTHO05D005940 2.4e-13 81.6 582 27.5
Lsat_1_v5_gn_4_137721 Lactuca sativa HOM05D004923 ORTHO05D005940 3.1e-13 81.3 235 29.8
A06p37630 Brassica napus HOM05D004923 ORTHO05D005940 7.0e-13 80.1 628 26.0
PSO151G0084 Papaver somniferum HOM05D004923 ORTHO05D005940 2.0e-12 78.6 667 24.6
Actinidia08545 Actinidia chinensis HOM05D004923 ORTHO05D005940 4.2e-10 70.9 99 45.5
Actinidia00480 Actinidia chinensis HOM05D001349 ORTHO05D005940 2.1e-09 68.6 141 44.0
Ah.04g159900 Amaranthus hybridus HOM05D004923 ORTHO05D005940 8.0e-09 66.6 635 25.0
BolC7t44596H Brassica oleracea HOM05D004923 ORTHO05D005940 1.0e-08 66.2 659 27.0
CDE09G0746 Ceratophyllum demersum HOM05D056443 ORTHO05D005940 2.3e-08 65.1 676 21.3
SHI18226 Sapria himalayana HOM05D004923 ORTHO05D005940 2.3e-08 65.1 76 43.4
COL.COLO4_23513 Corchorus olitorius HOM05D004923 ORTHO05D005940 3.9e-08 64.3 118 40.7
CAN.G909.12 Capsicum annuum HOM05D004923 ORTHO05D005940 5.2e-08 63.9 151 31.8
BraA06t26683Z Brassica rapa HOM05D004923 ORTHO05D005940 1.1e-07 62.8 627 23.8
CAN.G213.13 Capsicum annuum HOM05D000181 ORTHO05D005940 2.6e-07 61.6 88 45.5
Haze_23464 Corylus avellana HOM05D004923 ORTHO05D005940 7.4e-07 60.1 66 57.6
Lj8C55T14 Lonicera japonica HOM05D004923 ORTHO05D005940 2.2e-06 58.5 64 50.0
CAN.G652.6 Capsicum annuum HOM05D004923 ORTHO05D005940 4.8e-06 57.4 76 46.1


User provided reference genes

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