Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000930 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 6.6e-54 213.8 107 100.0
CSS0022335 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 9.9e-50 199.9 101 98.0
CSS0042304 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 2.7e-47 191.8 101 94.1
CsaV3_2G035050 Cucumis sativus L. HOM05D002044 ORTHO05D005337 3.9e-46 188.0 101 89.1
CiPaw.05G013900 Carya illinoinensis HOM05D002044 ORTHO05D005337 8.6e-46 186.8 101 88.1
Lj5A216T105 Lonicera japonica HOM05D002044 ORTHO05D005337 8.6e-46 186.8 101 90.1
Actinidia04375 Actinidia chinensis HOM05D002044 ORTHO05D005337 1.1e-45 186.4 101 92.1
Actinidia05503 Actinidia chinensis HOM05D002044 ORTHO05D005337 1.1e-45 186.4 101 92.1
CSS0012634 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 4.3e-45 184.5 100 93.0
Hma1.2p1_0375F.1_g138885 Hydrangea macrophylla HOM05D002044 ORTHO05D005337 5.6e-45 184.1 101 90.1
Nitab4.5_0003534g0050 Nicotiana tabacum HOM05D002044 ORTHO05D005337 5.6e-45 184.1 101 86.1
Sed0022817 Sechium edule HOM05D002044 ORTHO05D005337 7.3e-45 183.7 101 89.1
arahy.Tifrunner.gnm1.ann1.DB7NWR Arachis hypogaea HOM05D002044 ORTHO05D005337 9.5e-45 183.3 104 82.7
Duzib248G0129 Durio zibethinus HOM05D002044 ORTHO05D005337 9.5e-45 183.3 101 88.1
MSTRG.20199 Avicennia marina HOM05D002044 ORTHO05D005337 1.6e-44 182.6 101 88.1
vmacro19458 Vaccinium macrocarpon HOM05D002044 ORTHO05D005337 1.6e-44 182.6 101 90.1
Sed0009404 Sechium edule HOM05D002044 ORTHO05D005337 2.1e-44 182.2 101 88.1
Nn1g04647 Nelumbo nucifera HOM05D002044 ORTHO05D005337 2.8e-44 181.8 100 86.0
Manes.07G065600 Manihot esculenta HOM05D002044 ORTHO05D005337 3.6e-44 181.4 101 86.1
Thecc.02G112200 Theobroma cacao HOM05D002044 ORTHO05D005337 3.6e-44 181.4 101 86.1
DCAR_029099 Daucus carota HOM05D002044 ORTHO05D005337 4.7e-44 181.0 101 87.1
Nitab4.5_0002441g0030 Nicotiana tabacum HOM05D002044 ORTHO05D005337 4.7e-44 181.0 101 84.2
PGSC0003DMG400013301 Solanum tuberosum HOM05D002044 ORTHO05D005337 4.7e-44 181.0 101 88.1
TAR625G0358 Trochodendron aralioides HOM05D002044 ORTHO05D005337 4.7e-44 181.0 101 85.1
AUR62010336 Chenopodium quinoa HOM05D002044 ORTHO05D005337 6.2e-44 180.6 101 85.1
Potri.001G297900 Populus trichocarpa HOM05D002044 ORTHO05D005337 6.2e-44 180.6 101 87.1
Potri.009G092700 Populus trichocarpa HOM05D002044 ORTHO05D005337 6.2e-44 180.6 101 88.1
PGR042G0312 Punica granatum HOM05D002044 ORTHO05D005337 6.2e-44 180.6 101 84.2
SGA_v2.0_scaffold225G42999 Striga asiatica HOM05D002044 ORTHO05D005337 6.2e-44 180.6 101 87.1
Gohir.D02G206500 Gossypium hirsutum HOM05D002044 ORTHO05D005337 8.1e-44 180.3 101 86.1
Gorai.005G233900 Gossypium raimondii HOM05D002044 ORTHO05D005337 8.1e-44 180.3 101 86.1
Solyc11g012730.3 Solanum lycopersicum HOM05D002044 ORTHO05D005337 8.1e-44 180.3 101 87.1
Sopen11g007470 Solanum pennellii HOM05D002044 ORTHO05D005337 8.1e-44 180.3 101 87.1
arahy.Tifrunner.gnm1.ann1.E7DDSD Arachis hypogaea HOM05D002044 ORTHO05D005337 1.1e-43 179.9 101 84.2
arahy.Tifrunner.gnm1.ann1.JSZB3T Arachis hypogaea HOM05D002044 ORTHO05D005337 1.1e-43 179.9 101 84.2
Rhsim10G0161800 Rhododendron simsii HOM05D002044 ORTHO05D005337 1.1e-43 179.9 101 89.1
Sc08g0001210 Simmondsia chinensis HOM05D002044 ORTHO05D005337 1.1e-43 179.9 101 83.2
PSO541G3790 Papaver somniferum HOM05D002044 ORTHO05D005337 1.4e-43 179.5 101 86.1
PSO675G8768 Papaver somniferum HOM05D002044 ORTHO05D005337 1.4e-43 179.5 101 86.1
Nn5g30477 Nelumbo nucifera HOM05D002044 ORTHO05D005337 1.8e-43 179.1 101 84.2
QL11p032343 Quercus lobata HOM05D002044 ORTHO05D005337 1.8e-43 179.1 101 86.1
ECA234G0629 Erigeron canadensis HOM05D002044 ORTHO05D005337 2.4e-43 178.7 98 88.8
Gohir.A03G185000 Gossypium hirsutum HOM05D002044 ORTHO05D005337 2.4e-43 178.7 101 85.1
Rhsim05G0089300 Rhododendron simsii HOM05D002044 ORTHO05D005337 2.4e-43 178.7 101 88.1
Sabra09G0071300 Salix brachista HOM05D002044 ORTHO05D005337 2.4e-43 178.7 101 86.1
Migut.B00409 Erythranthe guttata HOM05D002044 ORTHO05D005337 3.1e-43 178.3 101 86.1
Atru.chr12.1082 Acer truncatum HOM05D002044 ORTHO05D005337 4.0e-43 177.9 101 82.2
Duzib132G1163 Durio zibethinus HOM05D002044 ORTHO05D005337 4.0e-43 177.9 101 84.2
MBI14_g09419_MAGBIO Magnolia biondii HOM05D002044 ORTHO05D005337 4.0e-43 177.9 101 83.2
MBI14_g22154_MAGBIO Magnolia biondii HOM05D002044 ORTHO05D005337 4.0e-43 177.9 101 83.2
GSVIVG01037888001 Vitis vinifera HOM05D002044 ORTHO05D005337 4.0e-43 177.9 101 85.1
CAN.G1156.17 Capsicum annuum HOM05D002044 ORTHO05D005337 5.2e-43 177.6 97 86.6
Dinv16042 Davidia involucrata HOM05D002044 ORTHO05D005337 5.2e-43 177.6 101 84.2
HanXRQChr10g0288701 Helianthus annuus HOM05D002044 ORTHO05D005337 5.2e-43 177.6 101 88.1
Prupe.8G138300 Prunus persica HOM05D002044 ORTHO05D005337 5.2e-43 177.6 101 84.2
Glyma.10G259900 Glycine max HOM05D002044 ORTHO05D005337 6.8e-43 177.2 101 84.2
MD05G1093600 Malus domestica HOM05D002044 ORTHO05D005337 6.8e-43 177.2 101 84.2
Glyma.20G131000 Glycine max HOM05D002044 ORTHO05D005337 8.9e-43 176.8 101 84.2
Cpa.g.sc292.6 Carica papaya HOM05D002044 ORTHO05D005337 1.2e-42 176.4 101 84.2
Dinv42209 Davidia involucrata HOM05D002044 ORTHO05D005337 1.2e-42 176.4 101 83.2
FvH4_2g04710 Fragaria vesca HOM05D002044 ORTHO05D005337 1.2e-42 176.4 101 85.1
FAN15G0361 Fragaria x ananassa HOM05D002044 ORTHO05D005337 1.2e-42 176.4 101 85.1
FAN20G2696 Fragaria x ananassa HOM05D002044 ORTHO05D005337 1.2e-42 176.4 101 85.1
PSO017G0285 Papaver somniferum HOM05D002044 ORTHO05D005337 1.2e-42 176.4 101 84.2
RcHm_v2.0_Chr6g0254341 Rosa chinensis HOM05D002044 ORTHO05D005337 1.2e-42 176.4 101 85.1
Lj5g0028080 Lotus japonicus HOM05D002044 ORTHO05D005337 1.5e-42 176.0 101 82.2
Hund06300 Selenicereus undatus HOM05D002044 ORTHO05D005337 1.5e-42 176.0 101 81.2
Ciclev10029279m.g Citrus clementina HOM05D002044 ORTHO05D005337 2.0e-42 175.6 101 83.2
Sabra16G0186700 Salix brachista HOM05D002044 ORTHO05D005337 2.0e-42 175.6 101 83.2
Eucgr.G01295 Eucalyptus grandis HOM05D002044 ORTHO05D005337 2.6e-42 175.3 101 85.1
TPR.G34538 Trifolium pratense HOM05D002044 ORTHO05D005337 2.6e-42 175.3 101 82.2
ClCG02G008580 Citrullus lanatus HOM05D002044 ORTHO05D005337 3.4e-42 174.9 97 85.6
COL.COLO4_32562 Corchorus olitorius HOM05D002044 ORTHO05D005337 5.8e-42 174.1 98 84.7
Peaxi162Scf00925g00012 Petunia axillaris HOM05D002044 ORTHO05D005337 5.8e-42 174.1 90 92.2
Haze_10209 Corylus avellana HOM05D002044 ORTHO05D005337 7.6e-42 173.7 101 80.2
FAN24G0835 Fragaria x ananassa HOM05D002044 ORTHO05D005337 7.6e-42 173.7 101 83.2
HanXRQChr13g0407801 Helianthus annuus HOM05D002044 ORTHO05D005337 7.6e-42 173.7 97 86.6
Lsat_1_v5_gn_3_25161 Lactuca sativa HOM05D002044 ORTHO05D005337 7.6e-42 173.7 98 85.7
Phvul.007G042300 Phaseolus vulgaris HOM05D002044 ORTHO05D005337 7.6e-42 173.7 101 82.2
Psat6g216480 Pisum sativum HOM05D002044 ORTHO05D005337 7.6e-42 173.7 101 80.2
TPR.G27108 Trifolium pratense HOM05D002044 ORTHO05D005337 7.6e-42 173.7 101 81.2
Glyma.15G219600 Glycine max HOM05D002044 ORTHO05D005337 9.9e-42 173.3 101 82.2
Medtr1g106955 Medicago truncatula HOM05D002044 ORTHO05D005337 9.9e-42 173.3 101 81.2
Ah.01g018420 Amaranthus hybridus HOM05D002044 ORTHO05D005337 1.7e-41 172.6 101 81.2
Nitab4.5_0010237g0020 Nicotiana tabacum HOM05D002044 ORTHO05D005337 1.7e-41 172.6 92 87.0
Lalb_Chr06g0165321 Lupinus albus HOM05D002044 ORTHO05D005337 2.9e-41 171.8 101 82.2
Lalb_Chr21g0308221 Lupinus albus HOM05D002044 ORTHO05D005337 2.9e-41 171.8 101 81.2
SalBow6G3741 Salvia bowleyana HOM05D002044 ORTHO05D005337 2.9e-41 171.8 101 82.2
SalBow6G6092 Salvia bowleyana HOM05D002044 ORTHO05D005337 2.9e-41 171.8 101 82.2
VMungo0720G1876 Vigna mungo HOM05D002044 ORTHO05D005337 2.9e-41 171.8 101 80.2
Aqoxy6G02802 Aquilegia oxysepala HOM05D002044 ORTHO05D005337 6.4e-41 170.6 98 82.7
Cfa004613 Carpinus fangiana HOM05D002044 ORTHO05D005337 6.4e-41 170.6 101 78.2
FAN27G0061 Fragaria x ananassa HOM05D002044 ORTHO05D005337 6.4e-41 170.6 101 83.2
TWI79G1456 Tripterygium wilfordii HOM05D002044 ORTHO05D005337 6.4e-41 170.6 101 79.2
THA.LOC104819545 Tarenaya hassleriana HOM05D002044 ORTHO05D005337 8.4e-41 170.2 101 80.2
CDE04G1739 Ceratophyllum demersum HOM05D002044 ORTHO05D005337 1.9e-40 169.1 101 80.2
Cc02_g19500 Coffea canephora HOM05D002044 ORTHO05D005337 1.9e-40 169.1 101 79.2
ATR0753G080 Amborella trichopoda HOM05D002044 ORTHO05D005337 2.4e-40 168.7 96 82.3
Ca_11053_v3 Cicer arietinum L. HOM05D002044 ORTHO05D005337 7.1e-40 167.2 95 83.2
Lsat_1_v5_gn_6_99560 Lactuca sativa HOM05D000288 ORTHO05D005337 7.1e-40 167.2 95 84.2
TWI75G1328 Tripterygium wilfordii HOM05D002044 ORTHO05D005337 7.1e-40 167.2 101 78.2
AL3G52920 Arabidopsis lyrata HOM05D002044 ORTHO05D005337 1.2e-39 166.4 96 82.3
AT2G18990 Arabidopsis thaliana HOM05D002044 ORTHO05D005337 1.2e-39 166.4 96 82.3
AL5G14080 Arabidopsis lyrata HOM05D002044 ORTHO05D005337 2.7e-39 165.2 96 81.2
CDE02G0142 Ceratophyllum demersum HOM05D002044 ORTHO05D005337 3.5e-39 164.9 101 77.2
AT3G25580 Arabidopsis thaliana HOM05D002044 ORTHO05D005337 6.0e-39 164.1 96 80.2
unitig_0.g881 Utricularia gibba HOM05D002044 ORTHO05D005337 7.8e-39 163.7 94 80.9
Thhalv10026241m.g Eutrema salsugineum HOM05D002044 ORTHO05D005337 1.3e-38 162.9 101 77.2
Sp7g32070 Schrenkiella parvula HOM05D002044 ORTHO05D005337 1.3e-38 162.9 101 77.2
HPP92_024630 Vanilla planifolia HOM05D002044 ORTHO05D005337 1.3e-38 162.9 101 78.2
Carub.0003s3323 Capsella rubella HOM05D002044 ORTHO05D005337 1.7e-38 162.5 96 79.2
Carub.0005s0334 Capsella rubella HOM05D002044 ORTHO05D005337 1.7e-38 162.5 96 78.1
Thhalv10022846m.g Eutrema salsugineum HOM05D002044 ORTHO05D005337 1.7e-38 162.5 101 78.2
CARHR242500 Cardamine hirsuta HOM05D002044 ORTHO05D005337 2.3e-38 162.2 102 79.4
Sp3g32230 Schrenkiella parvula HOM05D002044 ORTHO05D005337 3.0e-38 161.8 101 77.2
BcaNung04161 Brassica carinata HOM05D002044 ORTHO05D005337 3.9e-38 161.4 101 76.2
Oeu011152.1 Olea europaea HOM05D002044 ORTHO05D005337 3.9e-38 161.4 94 81.9
CSS0041438 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 5.1e-38 161.0 101 78.2
A01p04130 Brassica napus HOM05D002044 ORTHO05D005337 8.6e-38 160.2 101 75.2
C01p04500 Brassica napus HOM05D002044 ORTHO05D005337 8.6e-38 160.2 101 75.2
BolC1t00436H Brassica oleracea HOM05D002044 ORTHO05D005337 8.6e-38 160.2 101 75.2
BraA01t00402Z Brassica rapa HOM05D002044 ORTHO05D005337 8.6e-38 160.2 101 75.2
CSS0033320 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 1.5e-37 159.5 101 77.2
Aa31LG2G20360 Aethionema arabicum HOM05D002044 ORTHO05D005337 4.3e-37 157.9 102 74.5
CSS0030744 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 4.3e-37 157.9 101 83.2
Hma1.2p1_1518F.1_g288530 Hydrangea macrophylla HOM05D002044 ORTHO05D005337 9.0e-35 150.2 89 88.8
SEGI_30240 Sequoiadendron giganteum HOM05D002044 ORTHO05D005337 1.5e-34 149.4 102 68.6
Os08g0250700 Oryza sativa ssp. japonica HOM05D002044 ORTHO05D005337 1.3e-33 146.4 101 68.3
Zm00001eb178370 Zea mays HOM05D002044 ORTHO05D005337 1.7e-33 146.0 96 69.8
TAR381G0640 Trochodendron aralioides HOM05D002044 ORTHO05D005337 1.2e-31 139.8 101 68.3
Mapoly0048s0065 Marchantia polymorpha HOM05D002044 ORTHO05D005337 1.5e-29 132.9 96 62.5
Pp3c8_16300 Physcomitrium patens HOM05D002044 ORTHO05D005337 9.6e-29 130.2 96 60.4
CSS0022955 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 2.1e-28 129.0 82 84.1
EL10Ac9g22245 Beta vulgaris HOM05D002044 ORTHO05D005337 8.1e-28 127.1 82 78.0
CBR_g41441 Chara braunii HOM05D002044 ORTHO05D005337 8.1e-28 127.1 104 60.6
BraA03t15355Z Brassica rapa HOM05D002044 ORTHO05D005337 9.0e-27 123.6 82 70.7
A03p62800 Brassica napus HOM05D002044 ORTHO05D005337 2.7e-23 112.1 80 67.5
Cre01.g037800 Chlamydomonas reinhardtii HOM05D002044 ORTHO05D005337 2.7e-23 112.1 95 50.5
Sc08g0001240 Simmondsia chinensis HOM05D002044 ORTHO05D005337 9.6e-21 103.6 51 88.2
Oeu013764.1 Olea europaea HOM05D002044 ORTHO05D005337 3.7e-20 101.7 51 84.3
PRCOL_00005050 Prasinoderma coloniale HOM05D002044 ORTHO05D005337 6.2e-20 100.9 96 45.8
MCO11G837 Micromonas commoda HOM05D002044 ORTHO05D005337 1.4e-19 99.8 93 45.2
SMO367G0382 Selaginella moellendorffii HOM05D002044 ORTHO05D005337 9.9e-18 93.6 51 74.5
ECA248G0245 Erigeron canadensis HOM05D000121 ORTHO05D000102 1.9e-16 89.4 59 81.4
AagrBONN_evm.TU.Sc2ySwM_228.3117 Anthoceros agrestis HOM05D002044 ORTHO05D005337 5.5e-16 87.8 51 68.6
CAN.G587.70 Capsicum annuum HOM05D002044 ORTHO05D005337 7.6e-10 67.4 34 88.2
SGA_v2.0_scaffold32G13022 Striga asiatica HOM05D002044 ORTHO05D005337 4.9e-09 64.7 53 69.8
Ca_22453_v3 Cicer arietinum L. HOM05D002044 ORTHO05D005000 6.5e-09 64.3 93 37.6
Migut.H02517 Erythranthe guttata HOM05D002044 ORTHO05D005000 8.4e-09 63.9 93 39.8
Medtr8g076890 Medicago truncatula HOM05D002044 ORTHO05D005000 8.4e-09 63.9 93 37.6
TPR.G21543 Trifolium pratense HOM05D002044 ORTHO05D005000 8.4e-09 63.9 93 37.6
Psat4g095920 Pisum sativum HOM05D002044 ORTHO05D005000 1.9e-08 62.8 93 36.6
Lalb_Chr05g0225171 Lupinus albus HOM05D002044 ORTHO05D005000 2.5e-08 62.4 93 37.6
THA.LOC104800774 Tarenaya hassleriana HOM05D002044 ORTHO05D005000 2.5e-08 62.4 93 37.6
Lj2C458T3 Lonicera japonica HOM05D002044 ORTHO05D005000 3.2e-08 62.0 93 38.7
Lj2g0004786 Lotus japonicus HOM05D002044 ORTHO05D005000 3.2e-08 62.0 92 38.0
arahy.Tifrunner.gnm1.ann1.5QW7B0 Arachis hypogaea HOM05D002044 ORTHO05D005000 4.2e-08 61.6 93 37.6
ECA232G0973 Erigeron canadensis HOM05D002044 ORTHO05D005000 4.2e-08 61.6 93 37.6
SGA_v2.0_scaffold51G18807 Striga asiatica HOM05D002044 ORTHO05D005000 5.5e-08 61.2 93 38.7
Lsat_1_v5_gn_9_109101 Lactuca sativa HOM05D002044 ORTHO05D005000 7.1e-08 60.8 93 37.6
SGA_v2.0_scaffold12G06330 Striga asiatica HOM05D002044 ORTHO05D005000 7.1e-08 60.8 93 38.7
MSTRG.23256 Avicennia marina HOM05D002044 ORTHO05D005000 1.2e-07 60.1 93 38.7
Glyma.02G053300 Glycine max HOM05D002044 ORTHO05D005000 1.2e-07 60.1 93 35.5
Gohir.D12G062550 Gossypium hirsutum HOM05D002044 ORTHO05D005888 1.6e-07 59.7 92 37.0
Gorai.008G065600 Gossypium raimondii HOM05D002044 ORTHO05D005888 1.6e-07 59.7 92 37.0
AL8G45120 Arabidopsis lyrata HOM05D002044 ORTHO05D005000 2.1e-07 59.3 93 36.6
Nn5g28996 Nelumbo nucifera HOM05D002044 ORTHO05D005000 2.1e-07 59.3 93 41.9
HanXRQChr09g0261201 Helianthus annuus HOM05D002044 ORTHO05D005000 2.7e-07 58.9 93 37.6
QL06p035291 Quercus lobata HOM05D002044 ORTHO05D005000 2.7e-07 58.9 93 36.6
Glyma.14G219400 Glycine max HOM05D002044 ORTHO05D005000 3.5e-07 58.5 78 37.2
Lsat_1_v5_gn_5_168741 Lactuca sativa HOM05D002044 ORTHO05D005000 3.5e-07 58.5 93 38.7
Gorai.007G200900 Gossypium raimondii HOM05D002044 ORTHO05D005000 4.6e-07 58.2 93 38.7
Lj4g0007934 Lotus japonicus HOM05D000394 ORTHO05D000299 4.6e-07 58.2 94 39.4
CDE10G0804 Ceratophyllum demersum HOM05D002044 ORTHO05D005000 6.0e-07 57.8 86 41.9
Gohir.D11G188800 Gossypium hirsutum HOM05D002044 ORTHO05D005000 6.0e-07 57.8 93 37.6
SMO164G0166 Selaginella moellendorffii HOM05D002044 ORTHO05D005000 6.0e-07 57.8 92 37.0
Ah.12g058700 Amaranthus hybridus HOM05D002044 ORTHO05D005000 7.9e-07 57.4 64 46.9
TWI73G0506 Tripterygium wilfordii HOM05D002044 ORTHO05D005000 7.9e-07 57.4 97 35.1
Carub.0008s2810 Capsella rubella HOM05D002044 ORTHO05D005000 1.8e-06 56.2 93 38.7
Oeu016116.1 Olea europaea HOM05D002044 ORTHO05D005000 1.8e-06 56.2 93 35.5
Gohir.D11G188940 Gossypium hirsutum HOM05D002044 ORTHO05D005000 2.3e-06 55.8 68 44.1
Mapoly0077s0014 Marchantia polymorpha HOM05D002044 ORTHO05D005000 8.7e-06 53.9 92 31.5


User provided reference genes

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