Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000926 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 2.1e-62 242.3 129 100.0
CSS0013260 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 1.3e-32 143.3 117 70.1
CSS0032829 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 1.3e-32 143.3 117 70.1
CSS0006045 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 3.2e-31 138.7 129 65.1
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 2.0e-25 119.4 133 58.6
Rhsim05G0188300 Rhododendron simsii HOM05D001886 ORTHO05D004007 5.2e-21 104.8 124 54.8
CSS0007004 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 8.9e-21 104.0 125 53.6
CSS0016629 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 8.9e-21 104.0 125 53.6
Gohir.D09G153200 Gossypium hirsutum HOM05D001886 ORTHO05D004007 3.2e-18 95.5 121 48.8
Gorai.006G174700 Gossypium raimondii HOM05D001886 ORTHO05D004007 4.1e-18 95.1 121 48.8
Thecc.05G043600 Theobroma cacao HOM05D001886 ORTHO05D004007 5.4e-18 94.7 127 50.4
Duzib093G1578 Durio zibethinus HOM05D001886 ORTHO05D004007 7.0e-18 94.4 121 49.6
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 7.0e-18 94.4 146 44.5
COL.COLO4_14848 Corchorus olitorius HOM05D001886 ORTHO05D004007 9.2e-18 94.0 121 49.6
CiPaw.09G189700 Carya illinoinensis HOM05D001886 ORTHO05D004007 2.0e-17 92.8 125 51.2
Gohir.A09G157900 Gossypium hirsutum HOM05D001886 ORTHO05D004007 2.0e-17 92.8 121 47.1
Manes.09G087200 Manihot esculenta HOM05D001886 ORTHO05D004007 2.7e-17 92.4 127 50.4
Hma1.2p1_1481F.1_g286140 Hydrangea macrophylla HOM05D001886 ORTHO05D004007 3.0e-16 89.0 116 50.9
TAR623G0309 Trochodendron aralioides HOM05D001886 ORTHO05D004007 3.0e-16 89.0 125 50.4
MD04G1123500 Malus domestica HOM05D001886 ORTHO05D004007 6.6e-16 87.8 121 47.1
Prupe.6G251200 Prunus persica HOM05D001886 ORTHO05D004007 6.6e-16 87.8 121 47.9
Hma1.2p1_1707F.1_g298490 Hydrangea macrophylla HOM05D001886 ORTHO05D004007 8.6e-16 87.4 116 50.0
Prupe.6G081800 Prunus persica HOM05D001886 ORTHO05D004007 1.1e-15 87.0 118 46.6
Ciclev10013572m.g Citrus clementina HOM05D001886 ORTHO05D004007 1.5e-15 86.7 128 45.3
Nitab4.5_0002077g0050 Nicotiana tabacum HOM05D001886 ORTHO05D004007 2.5e-15 85.9 110 49.1
CiPaw.13G097900 Carya illinoinensis HOM05D001886 ORTHO05D004007 4.3e-15 85.1 118 44.9
Gohir.D03G128600 Gossypium hirsutum HOM05D001886 ORTHO05D004007 4.3e-15 85.1 114 44.7
Gorai.003G135300 Gossypium raimondii HOM05D001886 ORTHO05D004007 5.6e-15 84.7 114 44.7
HanXRQChr13g0398891 Helianthus annuus HOM05D001886 ORTHO05D004007 5.6e-15 84.7 124 46.0
Aqoxy2G02038 Aquilegia oxysepala HOM05D001886 ORTHO05D004007 7.3e-15 84.3 118 45.8
QL05p010714 Quercus lobata HOM05D001886 ORTHO05D004007 7.3e-15 84.3 120 48.3
QL07p047484 Quercus lobata HOM05D001886 ORTHO05D004007 7.3e-15 84.3 120 48.3
TWI74G0754 Tripterygium wilfordii HOM05D001886 ORTHO05D004007 7.3e-15 84.3 121 43.0
ECA233G1369 Erigeron canadensis HOM05D001886 ORTHO05D004007 9.5e-15 84.0 131 44.3
Duzib150G0204 Durio zibethinus HOM05D001886 ORTHO05D004007 1.2e-14 83.6 118 41.5
Lsat_1_v5_gn_6_31360 Lactuca sativa HOM05D001886 ORTHO05D004007 1.2e-14 83.6 119 45.4
ClCG04G008370 Citrullus lanatus HOM05D001886 ORTHO05D004007 1.6e-14 83.2 113 46.9
CsaV3_4G024780 Cucumis sativus L. HOM05D001886 ORTHO05D004007 1.6e-14 83.2 115 46.1
Cfa011462 Carpinus fangiana HOM05D001886 ORTHO05D004007 2.1e-14 82.8 111 46.8
Haze_24047 Corylus avellana HOM05D001886 ORTHO05D004007 2.1e-14 82.8 121 45.5
SalBow4G1303 Salvia bowleyana HOM05D001886 ORTHO05D004007 3.6e-14 82.0 131 44.3
Haze_20751 Corylus avellana HOM05D001886 ORTHO05D004007 4.7e-14 81.6 116 46.6
Cfa017419 Carpinus fangiana HOM05D001886 ORTHO05D004007 6.2e-14 81.3 112 47.3
MELO3C003112.2 Cucumis melo HOM05D001886 ORTHO05D004007 6.2e-14 81.3 115 45.2
MD12G1139400 Malus domestica HOM05D001886 ORTHO05D004007 8.0e-14 80.9 121 43.8
Cpa.g.sc188.23 Carica papaya HOM05D001886 ORTHO05D004007 1.4e-13 80.1 120 40.8
MBI14_g24316_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D004007 1.4e-13 80.1 125 44.0
Thecc.09G325900 Theobroma cacao HOM05D001886 ORTHO05D004007 1.8e-13 79.7 118 42.4
Nn2g12929 Nelumbo nucifera HOM05D001886 ORTHO05D004007 2.3e-13 79.3 123 48.0
Eucgr.A01246 Eucalyptus grandis HOM05D001886 ORTHO05D004007 3.1e-13 79.0 123 47.2
Gohir.D07G100500 Gossypium hirsutum HOM05D001886 ORTHO05D004007 4.0e-13 78.6 106 45.3
Gorai.001G108400 Gossypium raimondii HOM05D001886 ORTHO05D004007 4.0e-13 78.6 106 45.3
Solyc09g010480.1 Solanum lycopersicum HOM05D001886 ORTHO05D004007 4.0e-13 78.6 127 42.5
COL.COLO4_18467 Corchorus olitorius HOM05D001886 ORTHO05D004007 6.8e-13 77.8 116 41.4
RcHm_v2.0_Chr5g0063581 Rosa chinensis HOM05D001886 ORTHO05D004007 6.8e-13 77.8 114 44.7
SalBow4G2596 Salvia bowleyana HOM05D001886 ORTHO05D004007 6.8e-13 77.8 100 49.0
SGA_v2.0_scaffold126G33809 Striga asiatica HOM05D001886 ORTHO05D004007 6.8e-13 77.8 110 47.3
Sopen09g005220 Solanum pennellii HOM05D001886 ORTHO05D004007 8.9e-13 77.4 127 41.7
PGSC0003DMG400008923 Solanum tuberosum HOM05D001886 ORTHO05D004007 1.2e-12 77.0 127 42.5
Actinidia05303 Actinidia chinensis HOM05D001886 ORTHO05D004007 1.5e-12 76.6 108 50.0
Gohir.A07G096100 Gossypium hirsutum HOM05D001886 ORTHO05D004007 2.0e-12 76.3 103 45.6
Nn2g10427 Nelumbo nucifera HOM05D001886 ORTHO05D004007 2.0e-12 76.3 114 48.2
PGR004G0749 Punica granatum HOM05D001886 ORTHO05D004007 2.0e-12 76.3 112 49.1
CiPaw.10G143600 Carya illinoinensis HOM05D001886 ORTHO05D004007 2.6e-12 75.9 123 47.2
CiPaw.09G189600 Carya illinoinensis HOM05D001886 ORTHO05D004007 5.8e-12 74.7 114 44.7
Migut.J00350 Erythranthe guttata HOM05D001886 ORTHO05D004007 7.5e-12 74.3 102 46.1
Sabra06G0063400 Salix brachista HOM05D001886 ORTHO05D004007 1.3e-11 73.6 125 44.8
Lj3P970T51 Lonicera japonica HOM05D001886 ORTHO05D004007 1.7e-11 73.2 101 50.5
Ciclev10030058m.g Citrus clementina HOM05D001886 ORTHO05D004007 3.7e-11 72.0 105 44.8
TAR636G3006 Trochodendron aralioides HOM05D001886 ORTHO05D004007 3.7e-11 72.0 98 50.0
Potri.006G083800 Populus trichocarpa HOM05D001886 ORTHO05D004007 6.4e-11 71.2 117 44.4
Lj1g0006648 Lotus japonicus HOM05D001886 ORTHO05D004007 1.9e-10 69.7 121 40.5
Lj1g0019269 Lotus japonicus HOM05D001886 ORTHO05D004007 1.9e-10 69.7 114 41.2
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 2.4e-10 69.3 98 48.0
FAN14G5259 Fragaria x ananassa HOM05D001886 ORTHO05D004007 2.4e-10 69.3 117 44.4
FvH4_6g14180 Fragaria vesca HOM05D001886 ORTHO05D004007 3.2e-10 68.9 117 44.4
FAN05G2305 Fragaria x ananassa HOM05D001886 ORTHO05D004007 3.2e-10 68.9 117 44.4
FAN09G0249 Fragaria x ananassa HOM05D001886 ORTHO05D004007 3.2e-10 68.9 117 44.4
CANSAT35G1619 Cannabis sativa HOM05D001886 ORTHO05D004007 4.1e-10 68.6 118 41.5
RcHm_v2.0_Chr3g0467161 Rosa chinensis HOM05D001886 ORTHO05D004007 1.2e-09 67.0 117 42.7
Glyma.19G172900 Glycine max HOM05D001886 ORTHO05D004007 1.6e-09 66.6 111 41.4
Lalb_Chr01g0019251 Lupinus albus HOM05D001886 ORTHO05D004007 2.7e-09 65.9 116 41.4
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 4.6e-09 65.1 121 38.8
Nitab4.5_0003267g0060 Nicotiana tabacum HOM05D001886 ORTHO05D004007 4.6e-09 65.1 72 52.8
HPP92_018051 Vanilla planifolia HOM05D001886 ORTHO05D004007 4.6e-09 65.1 102 43.1
HPP92_018060 Vanilla planifolia HOM05D001886 ORTHO05D004007 4.6e-09 65.1 102 43.1
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 6.0e-09 64.7 121 38.8
Phvul.001G169700 Phaseolus vulgaris HOM05D001886 ORTHO05D004007 7.8e-09 64.3 109 40.4
DCAR_009245 Daucus carota HOM05D001886 ORTHO05D004007 1.0e-08 63.9 122 44.3
Sp4g19850 Schrenkiella parvula HOM05D001886 ORTHO05D004007 1.0e-08 63.9 126 39.7
BcaB01g03772 Brassica carinata HOM05D001886 ORTHO05D004007 1.7e-08 63.2 124 41.9
MELO3C013683.2 Cucumis melo HOM05D001886 ORTHO05D004007 1.7e-08 63.2 111 39.6
Hma1.2p1_0624F.1_g191360 Hydrangea macrophylla HOM05D001886 ORTHO05D004007 1.7e-08 63.2 120 34.2
CARHR132080 Cardamine hirsuta HOM05D001886 ORTHO05D004007 2.3e-08 62.8 120 39.2
Glyma.03G172000 Glycine max HOM05D001886 ORTHO05D004007 2.3e-08 62.8 100 41.0
AT2G37530 Arabidopsis thaliana HOM05D001886 ORTHO05D004007 3.0e-08 62.4 119 38.7
Psat3g049240 Pisum sativum HOM05D001886 ORTHO05D004007 3.0e-08 62.4 105 39.0
Aa31LG5G22950 Aethionema arabicum HOM05D001886 ORTHO05D004007 3.9e-08 62.0 118 37.3
Medtr7g099860 Medicago truncatula HOM05D001886 ORTHO05D004007 3.9e-08 62.0 117 37.6
THA.LOC104823422 Tarenaya hassleriana HOM05D001886 ORTHO05D004007 3.9e-08 62.0 127 38.6
BcaC01g05612 Brassica carinata HOM05D001886 ORTHO05D004007 5.0e-08 61.6 124 41.1
C03p24330 Brassica napus HOM05D001886 ORTHO05D004007 5.0e-08 61.6 124 41.1
BolC3t14831H Brassica oleracea HOM05D001886 ORTHO05D004007 5.0e-08 61.6 124 41.1
FvH4_3g35450 Fragaria vesca HOM05D001886 ORTHO05D004007 8.6e-08 60.8 70 52.9
AUR62041758 Chenopodium quinoa HOM05D001886 ORTHO05D004007 1.5e-07 60.1 122 36.9
FAN16G1011 Fragaria x ananassa HOM05D001886 ORTHO05D004007 1.5e-07 60.1 70 52.9
Lj5g0001892 Lotus japonicus HOM05D001886 ORTHO05D004007 1.5e-07 60.1 124 41.1
Ah.01g020040 Amaranthus hybridus HOM05D001886 ORTHO05D004007 1.9e-07 59.7 116 36.2
Carub.0004s1945 Capsella rubella HOM05D001886 ORTHO05D004007 1.9e-07 59.7 132 37.1
BraA03t11311Z Brassica rapa HOM05D001886 ORTHO05D004007 2.5e-07 59.3 124 40.3
Psat3g049080 Pisum sativum HOM05D001886 ORTHO05D004007 3.3e-07 58.9 102 39.2
Sed0011835 Sechium edule HOM05D001886 ORTHO05D004007 3.3e-07 58.9 115 36.5
TPR.G21449 Trifolium pratense HOM05D001886 ORTHO05D004007 3.3e-07 58.9 116 36.2
FAN21G2352 Fragaria x ananassa HOM05D001886 ORTHO05D004007 4.3e-07 58.5 70 51.4
Thhalv10017427m.g Eutrema salsugineum HOM05D001886 ORTHO05D004007 7.3e-07 57.8 130 39.2
FAN11G3942 Fragaria x ananassa HOM05D001886 ORTHO05D004007 7.3e-07 57.8 49 63.3
A03p20700 Brassica napus HOM05D001886 ORTHO05D004007 9.5e-07 57.4 124 39.5
CANSAT01G0239 Cannabis sativa HOM05D001886 ORTHO05D004007 9.5e-07 57.4 96 42.7
Thhalv10022483m.g Eutrema salsugineum HOM05D001886 ORTHO05D004007 1.2e-06 57.0 119 41.2
FAN25G1849 Fragaria x ananassa HOM05D001886 ORTHO05D004007 1.2e-06 57.0 49 63.3
ClCG02G020370 Citrullus lanatus HOM05D001886 ORTHO05D004007 1.6e-06 56.6 110 37.3
Lalb_Chr06g0171021 Lupinus albus HOM05D001886 ORTHO05D004007 1.6e-06 56.6 117 35.9
AUR62041036 Chenopodium quinoa HOM05D001886 ORTHO05D004007 2.1e-06 56.2 122 35.2
Ca_08781_v3 Cicer arietinum L. HOM05D001886 ORTHO05D004007 2.1e-06 56.2 117 35.0
Glyma.10G043800 Glycine max HOM05D001886 ORTHO05D004007 2.1e-06 56.2 100 42.0
MD03G1097600 Malus domestica HOM05D001886 ORTHO05D004007 2.1e-06 56.2 72 44.4
PSO339G5886 Papaver somniferum HOM05D001886 ORTHO05D004007 2.1e-06 56.2 106 38.7
AL4G34020 Arabidopsis lyrata HOM05D001886 ORTHO05D004007 3.6e-06 55.5 121 38.8
Zm00001eb124260 Zea mays HOM05D001886 ORTHO05D004007 3.6e-06 55.5 110 40.0
Actinidia26440 Actinidia chinensis HOM05D001886 ORTHO05D004007 4.7e-06 55.1 82 47.6
Lalb_Chr20g0113261 Lupinus albus HOM05D001886 ORTHO05D004007 6.2e-06 54.7 72 45.8
Phvul.007G157600 Phaseolus vulgaris HOM05D001886 ORTHO05D004007 6.2e-06 54.7 116 37.9
ATR0723G053 Amborella trichopoda HOM05D001886 ORTHO05D004007 8.1e-06 54.3 128 37.5
HPP92_006604 Vanilla planifolia HOM05D001886 ORTHO05D004007 8.1e-06 54.3 122 32.0


User provided reference genes

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