Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 0.0e+00 1335.9 685 100.0
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 0.0e+00 1076.6 688 79.8
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 0.0e+00 1075.5 662 82.8
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 5.7e-308 1060.4 695 78.7
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 6.9e-306 1053.5 689 77.2
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 5.0e-304 1047.3 711 76.4
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 2.5e-303 1045.0 690 76.2
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 1.1e-300 1036.2 695 76.4
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 1.9e-300 1035.4 695 76.4
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 1.3e-299 1032.7 690 76.8
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 1.3e-299 1032.7 687 76.9
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 2.8e-299 1031.6 695 76.0
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 6.3e-299 1030.4 690 76.7
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 8.2e-299 1030.0 697 76.5
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 1.5e-297 1025.8 695 75.1
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 3.4e-297 1024.6 706 75.1
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 5.9e-297 1023.8 695 76.0
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.0e-296 1023.1 691 76.8
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 5.0e-296 1020.8 693 75.0
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 3.2e-295 1018.1 701 74.9
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 3.6e-294 1014.6 692 75.6
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 7.4e-292 1006.9 689 74.6
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 1.7e-291 1005.7 694 74.5
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 1.4e-290 1002.7 675 75.3
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 3.1e-290 1001.5 670 76.9
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 5.3e-290 1000.7 693 74.2
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 1.5e-289 999.2 667 75.6
Dinv38586 Davidia involucrata HOM05D005975 ORTHO05D007373 5.9e-289 997.3 620 82.4
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 8.5e-288 993.4 689 74.6
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 1.9e-287 992.3 690 72.2
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 2.1e-286 988.8 689 74.5
vmacro17674 Vaccinium macrocarpon HOM05D005975 ORTHO05D007373 2.7e-286 988.4 615 81.3
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 3.3e-284 981.5 688 74.1
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 4.4e-284 981.1 678 73.9
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 4.4e-284 981.1 684 74.0
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 1.1e-282 976.5 670 73.4
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 9.1e-282 973.4 677 73.7
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 1.2e-281 973.0 694 72.5
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 3.5e-281 971.5 690 71.7
Phvul.009G200500 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 5.9e-281 970.7 688 71.9
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 1.0e-280 969.9 691 72.1
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 8.5e-280 966.8 694 71.2
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 1.1e-279 966.5 690 72.3
Sed0024013 Sechium edule HOM05D005975 ORTHO05D007373 1.1e-279 966.5 684 73.7
Atru.chr9.776 Acer truncatum HOM05D005975 ORTHO05D007373 1.5e-279 966.1 633 78.2
Glyma.06G210800 Glycine max HOM05D005975 ORTHO05D007373 1.9e-279 965.7 691 72.1
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 2.5e-279 965.3 694 71.0
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 7.2e-279 963.8 666 72.8
Haze_18619 Corylus avellana HOM05D005975 ORTHO05D007373 1.8e-277 959.1 616 78.9
QL10p022556 Quercus lobata HOM05D005975 ORTHO05D007373 5.2e-277 957.6 620 78.5
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 2.0e-276 955.7 688 70.9
Lalb_Chr12g0197601 Lupinus albus HOM05D005975 ORTHO05D007373 5.7e-276 954.1 673 71.8
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 6.3e-275 950.7 670 71.6
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 6.3e-275 950.7 666 72.5
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 1.6e-273 946.0 663 72.1
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 1.6e-273 946.0 667 71.7
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 3.5e-273 944.9 665 71.4
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 1.0e-272 943.3 666 71.6
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 2.9e-272 941.8 693 69.8
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 1.1e-271 939.9 665 71.6
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 1.1e-271 939.9 666 70.9
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 1.5e-271 939.5 667 71.1
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 7.2e-271 937.2 661 71.7
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 3.6e-270 934.9 687 69.9
CARHR067040 Cardamine hirsuta HOM05D005975 ORTHO05D007373 4.0e-269 931.4 667 70.9
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 4.0e-269 931.4 665 71.0
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 4.0e-269 931.4 668 71.3
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 5.2e-269 931.0 695 70.1
Prupe.5G217600 Prunus persica HOM05D005975 ORTHO05D007373 7.5e-268 927.2 543 84.2
Cpa.g.sc549.1 Carica papaya HOM05D005975 ORTHO05D007373 2.8e-267 925.2 618 77.0
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 4.8e-267 924.5 663 71.8
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 1.1e-266 923.3 670 70.6
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 5.0e-264 914.4 676 69.7
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 5.0e-264 914.4 670 70.0
VMungo1215G0359 Vigna mungo HOM05D005975 ORTHO05D007373 6.5e-264 914.1 668 69.6
EL10Ac5g11254 Beta vulgaris HOM05D005975 ORTHO05D007373 4.2e-263 911.4 620 74.0
Lj9A429T54 Lonicera japonica HOM05D005975 ORTHO05D007373 4.2e-263 911.4 620 75.3
VMungo1309G0041 Vigna mungo HOM05D005975 ORTHO05D007373 2.1e-262 909.1 617 74.2
THA.LOC104808292 Tarenaya hassleriana HOM05D005975 ORTHO05D007373 8.0e-262 907.1 661 70.2
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 3.0e-261 905.2 660 69.8
arahy.Tifrunner.gnm1.ann1.1K5T8S Arachis hypogaea HOM05D005975 ORTHO05D007373 1.5e-260 902.9 621 72.8
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 1.8e-258 896.0 671 67.7
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 2.4e-258 895.6 671 67.5
CAN.G438.116 Capsicum annuum HOM05D005975 ORTHO05D007373 2.4e-258 895.6 621 72.3
Migut.I00389 Erythranthe guttata HOM05D005975 ORTHO05D007373 3.1e-258 895.2 685 67.2
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 5.9e-257 891.0 668 67.7
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 5.0e-256 887.9 671 68.6
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 1.9e-255 885.9 670 66.7
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 3.6e-254 881.7 672 68.2
MSTRG.22940 Avicennia marina HOM05D005975 ORTHO05D007373 1.0e-253 880.2 624 71.5
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 3.0e-253 878.6 663 68.0
ATR0753G136 Amborella trichopoda HOM05D005975 ORTHO05D007373 6.8e-253 877.5 740 62.7
Aa31LG4G4220 Aethionema arabicum HOM05D005975 ORTHO05D007373 1.1e-247 860.1 666 67.1
unitig_22.g6248 Utricularia gibba HOM05D005975 ORTHO05D007373 1.2e-233 813.5 653 64.5
Phvul.003G176900 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 2.4e-229 799.3 517 76.2
SalBow5G4970 Salvia bowleyana HOM05D005975 ORTHO05D007373 1.9e-226 789.6 670 63.7
SEGI_09157 Sequoiadendron giganteum HOM05D005975 ORTHO05D007373 9.2e-226 787.3 745 56.5
Sabra15G0077800 Salix brachista HOM05D005975 ORTHO05D007373 2.5e-223 779.2 667 63.6
Pp3c12_18170 Physcomitrium patens HOM05D005975 ORTHO05D007373 4.9e-219 765.0 773 52.3
Glyma.05G013100 Glycine max HOM05D005975 ORTHO05D007373 1.3e-216 756.9 686 60.1
COL.COLO4_22722 Corchorus olitorius HOM05D005975 ORTHO05D007373 2.5e-215 752.7 471 80.3
Pp3c4_11450 Physcomitrium patens HOM05D005975 ORTHO05D007373 2.5e-215 752.7 759 53.1
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 7.3e-215 751.1 684 57.7
AagrBONN_evm.TU.Sc2ySwM_228.4839 Anthoceros agrestis HOM05D005975 ORTHO05D007373 8.4e-211 737.6 825 49.1
Mapoly0016s0160 Marchantia polymorpha HOM05D005975 ORTHO05D007373 3.5e-209 732.3 841 47.1
Carub.0002s2070 Capsella rubella HOM05D005975 ORTHO05D007373 3.9e-200 702.2 452 76.5
Zm00001eb011310 Zea mays HOM05D005975 ORTHO05D007373 2.4e-197 693.0 604 59.4
SMO367G0788 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 3.6e-185 652.5 666 50.5
Nn3g17719 Nelumbo nucifera HOM05D005975 ORTHO05D007373 2.0e-175 620.2 440 73.0
CDE05G1454 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 9.7e-167 591.3 553 58.4
TAR622G1340 Trochodendron aralioides HOM05D005975 ORTHO05D007373 1.5e-162 577.4 437 68.4
CBR_g30105 Chara braunii HOM05D005975 ORTHO05D007373 5.7e-159 565.5 547 54.3
PSO074G0001 Papaver somniferum HOM05D005975 ORTHO05D007373 6.6e-123 445.7 323 70.0
CDE05G3359 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 3.7e-118 429.9 412 57.5
arahy.Tifrunner.gnm1.ann1.CEL6SJ Arachis hypogaea HOM05D005975 ORTHO05D007373 3.4e-111 406.8 261 77.4
HPP92_016579 Vanilla planifolia HOM05D005975 ORTHO05D007373 7.3e-106 389.0 354 56.8
HPP92_016580 Vanilla planifolia HOM05D005975 ORTHO05D007373 1.2e-100 371.7 251 71.7
BcaB05g24817 Brassica carinata HOM05D005975 ORTHO05D007373 4.3e-90 336.7 215 74.9
SMO146G0145 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 4.6e-84 316.6 333 51.4
Zm00001eb237870 Zea mays HOM05D005975 ORTHO05D007373 5.3e-80 303.1 557 37.7
Zm00001eb078910 Zea mays HOM05D005975 ORTHO05D007373 1.7e-62 245.0 151 74.8
CDE05G0573 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 3.0e-43 181.0 135 65.9
Nn3g18207 Nelumbo nucifera HOM05D005975 ORTHO05D007373 8.5e-38 162.9 156 59.0
Cre14.g633500 Chlamydomonas reinhardtii HOM05D005975 ORTHO05D007373 5.2e-35 153.7 448 30.1
Dinv38585 Davidia involucrata HOM05D005975 ORTHO05D007373 1.3e-17 95.9 65 72.3
Cfa019814 Carpinus fangiana HOM05D005975 ORTHO05D007373 2.7e-15 88.2 68 64.7
Nn1g03516 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.5e-10 72.4 49 73.5
Nn4g23789 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.1e-08 66.2 48 64.6
Potri.001G289250 Populus trichocarpa HOM05D005975 ORTHO05D007373 7.1e-08 63.5 48 62.5


User provided reference genes

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