Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000910 Camellia sinensis var. sinensis HOM05D006609 ORTHO05D008551 2.9e-140 501.9 255 100.0
Actinidia13339 Actinidia chinensis HOM05D006609 ORTHO05D008551 2.3e-113 412.5 250 82.4
Dinv27894 Davidia involucrata HOM05D006609 ORTHO05D008551 3.0e-105 385.6 236 83.1
GSVIVG01035613001 Vitis vinifera HOM05D006609 ORTHO05D008551 1.7e-103 379.8 253 76.3
Hma1.2p1_1138F.1_g260815 Hydrangea macrophylla HOM05D006609 ORTHO05D008551 2.5e-99 365.9 238 77.7
TAR626G1286 Trochodendron aralioides HOM05D006609 ORTHO05D008551 7.2e-99 364.4 252 75.0
RhsimUnG0061900 Rhododendron simsii HOM05D006609 ORTHO05D008551 1.6e-98 363.2 248 74.6
Rhsim02G0176600 Rhododendron simsii HOM05D006609 ORTHO05D008551 3.6e-98 362.1 241 77.2
CiPaw.07G203500 Carya illinoinensis HOM05D006609 ORTHO05D008551 3.9e-97 358.6 251 72.5
Sopen12g031720 Solanum pennellii HOM05D006609 ORTHO05D008551 3.9e-97 358.6 257 70.8
Cfa013375 Carpinus fangiana HOM05D006609 ORTHO05D008551 9.7e-96 354.0 255 71.4
Manes.16G074700 Manihot esculenta HOM05D006609 ORTHO05D008551 2.8e-95 352.4 259 69.5
MSTRG.25911 Avicennia marina HOM05D006609 ORTHO05D008551 2.4e-94 349.4 256 66.8
MBI04_g06585_MAGBIO Magnolia biondii HOM05D006609 ORTHO05D008551 4.1e-94 348.6 248 72.6
Peaxi162Scf00064g01521 Petunia axillaris HOM05D006609 ORTHO05D008551 9.1e-94 347.4 247 71.3
Migut.A00197 Erythranthe guttata HOM05D006609 ORTHO05D008551 1.6e-93 346.7 247 68.8
PGR031G0123 Punica granatum HOM05D006609 ORTHO05D008551 4.5e-93 345.1 247 69.2
CAN.G208.62 Capsicum annuum HOM05D006609 ORTHO05D008551 7.7e-93 344.4 257 68.5
Duzib168G0257 Durio zibethinus HOM05D006609 ORTHO05D008551 1.0e-92 344.0 259 70.3
Gohir.D05G047900 Gossypium hirsutum HOM05D006609 ORTHO05D008551 1.7e-92 343.2 258 68.2
Nn8g39112 Nelumbo nucifera HOM05D006609 ORTHO05D008551 1.7e-92 343.2 253 71.9
Thecc.09G046100 Theobroma cacao HOM05D006609 ORTHO05D008551 1.7e-92 343.2 258 70.5
Potri.006G237600 Populus trichocarpa HOM05D006609 ORTHO05D008551 1.1e-91 340.5 242 70.7
Lsat_1_v5_gn_6_22680 Lactuca sativa HOM05D006609 ORTHO05D008551 3.2e-91 339.0 254 67.7
Hund03393 Selenicereus undatus HOM05D006609 ORTHO05D008551 3.6e-90 335.5 250 68.8
MD15G1092400 Malus domestica HOM05D006609 ORTHO05D008551 4.7e-90 335.1 259 65.3
CANSAT25G3446 Cannabis sativa HOM05D006609 ORTHO05D008551 3.0e-89 332.4 258 65.1
Solyc12g095820.3 Solanum lycopersicum HOM05D006609 ORTHO05D008551 8.8e-89 330.9 236 72.0
Aqoxy7G01461 Aquilegia oxysepala HOM05D006609 ORTHO05D008551 2.6e-88 329.3 253 66.4
PGSC0003DMG400029395 Solanum tuberosum HOM05D006609 ORTHO05D008551 3.4e-88 328.9 236 71.6
COL.COLO4_20980 Corchorus olitorius HOM05D006609 ORTHO05D008551 7.5e-88 327.8 258 65.9
TWI63G1544 Tripterygium wilfordii HOM05D006609 ORTHO05D008551 2.2e-87 326.2 247 67.2
VMungo0647G0700 Vigna mungo HOM05D006609 ORTHO05D008551 1.1e-86 323.9 256 65.6
Cc08_g09720 Coffea canephora HOM05D006609 ORTHO05D008551 5.3e-86 321.6 246 66.7
Glyma.17G192700 Glycine max HOM05D006609 ORTHO05D008551 2.0e-85 319.7 253 66.0
Haze_21897 Corylus avellana HOM05D006609 ORTHO05D008551 3.5e-85 318.9 255 66.3
Ah.16g105840 Amaranthus hybridus HOM05D006609 ORTHO05D008551 5.9e-85 318.2 247 65.2
MD08G1113000 Malus domestica HOM05D006609 ORTHO05D008551 5.9e-85 318.2 259 62.2
QL12p041270 Quercus lobata HOM05D006609 ORTHO05D008551 5.9e-85 318.2 227 73.6
Phvul.001G063300 Phaseolus vulgaris HOM05D006609 ORTHO05D008551 2.2e-84 316.2 257 63.4
Psat6g037080 Pisum sativum HOM05D006609 ORTHO05D008551 6.5e-84 314.7 257 63.4
Sc09g0009360 Simmondsia chinensis HOM05D006609 ORTHO05D008551 1.1e-83 313.9 250 64.8
RcHm_v2.0_Chr6g0306561 Rosa chinensis HOM05D006609 ORTHO05D008551 1.5e-83 313.5 259 61.8
Lalb_Chr24g0402671 Lupinus albus HOM05D006609 ORTHO05D008551 1.9e-83 313.2 258 64.3
arahy.Tifrunner.gnm1.ann1.519I88 Arachis hypogaea HOM05D006609 ORTHO05D008551 2.5e-83 312.8 248 66.5
FvH4_2g35350 Fragaria vesca HOM05D006609 ORTHO05D008551 2.5e-83 312.8 259 61.8
ATR0705G113 Amborella trichopoda HOM05D006609 ORTHO05D008551 3.2e-83 312.4 253 64.0
arahy.Tifrunner.gnm1.ann1.TZ2NYQ Arachis hypogaea HOM05D006609 ORTHO05D008551 4.2e-83 312.0 248 66.5
Lj1g0027455 Lotus japonicus HOM05D006609 ORTHO05D008551 4.2e-83 312.0 259 62.9
Gorai.009G049200 Gossypium raimondii HOM05D006609 ORTHO05D008551 7.2e-83 311.2 237 67.9
Ciclev10009282m.g Citrus clementina HOM05D006609 ORTHO05D008551 1.2e-82 310.5 245 65.3
SalBow4G0386 Salvia bowleyana HOM05D006609 ORTHO05D008551 1.2e-82 310.5 247 61.1
Atru.chr7.2079 Acer truncatum HOM05D006609 ORTHO05D008551 8.0e-82 307.8 218 72.9
TPR.G24534 Trifolium pratense HOM05D006609 ORTHO05D008551 1.4e-81 307.0 257 61.9
Ca_03364_v3 Cicer arietinum L. HOM05D006609 ORTHO05D008551 2.3e-81 306.2 248 64.1
Sabra06G0185800 Salix brachista HOM05D006609 ORTHO05D008551 3.0e-81 305.8 292 58.2
CDE02G0347 Ceratophyllum demersum HOM05D006609 ORTHO05D008551 5.2e-81 305.1 249 64.7
Thhalv10014470m.g Eutrema salsugineum HOM05D006609 ORTHO05D008551 2.6e-80 302.8 259 60.2
Sp6g31980 Schrenkiella parvula HOM05D006609 ORTHO05D008551 3.4e-80 302.4 258 58.5
Nitab4.5_0001737g0100 Nicotiana tabacum HOM05D006609 ORTHO05D008551 7.5e-80 301.2 254 64.2
AL6G22350 Arabidopsis lyrata HOM05D006609 ORTHO05D008551 9.8e-80 300.8 258 59.3
BcaC03g13384 Brassica carinata HOM05D006609 ORTHO05D008551 1.7e-79 300.1 246 60.2
C02p05310 Brassica napus HOM05D006609 ORTHO05D008551 1.7e-79 300.1 246 60.2
BolC2t06479H Brassica oleracea HOM05D006609 ORTHO05D008551 1.7e-79 300.1 246 60.2
A02p01130 Brassica napus HOM05D006609 ORTHO05D008551 2.2e-79 299.7 246 60.6
BraA02t05092Z Brassica rapa HOM05D006609 ORTHO05D008551 2.2e-79 299.7 246 60.6
AUR62042442 Chenopodium quinoa HOM05D006609 ORTHO05D008551 3.7e-79 298.9 252 59.9
THA.LOC104808485 Tarenaya hassleriana HOM05D006609 ORTHO05D008551 4.8e-79 298.5 250 62.8
CARHR201580 Cardamine hirsuta HOM05D006609 ORTHO05D008551 1.1e-78 297.4 258 58.1
ClCG11G015120 Citrullus lanatus HOM05D006609 ORTHO05D008551 1.4e-78 297.0 258 60.1
PSO824G0011 Papaver somniferum HOM05D006609 ORTHO05D008551 1.8e-78 296.6 258 59.7
MELO3C003467.2 Cucumis melo HOM05D006609 ORTHO05D008551 3.1e-78 295.8 258 60.1
PSO173G0006 Papaver somniferum HOM05D006609 ORTHO05D008551 3.1e-78 295.8 248 61.7
Sed0023433 Sechium edule HOM05D006609 ORTHO05D008551 4.1e-78 295.4 259 59.5
Eucgr.C00603 Eucalyptus grandis HOM05D006609 ORTHO05D008551 7.0e-78 294.7 226 65.9
Aa31LG3G15550 Aethionema arabicum HOM05D006609 ORTHO05D008551 4.5e-77 292.0 255 57.3
BraA10t44672Z Brassica rapa HOM05D006609 ORTHO05D008551 1.0e-76 290.8 258 57.4
Medtr1g007120 Medicago truncatula HOM05D006609 ORTHO05D008551 1.7e-76 290.0 256 59.4
FAN27G2415 Fragaria x ananassa HOM05D006609 ORTHO05D008551 6.6e-76 288.1 259 58.3
FAN15G1983 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.5e-75 287.0 257 58.4
HPP92_021778 Vanilla planifolia HOM05D006609 ORTHO05D008551 2.1e-74 283.1 253 58.5
FAN20G1237 Fragaria x ananassa HOM05D006609 ORTHO05D008551 2.8e-74 282.7 259 57.9
BcaC04g19208 Brassica carinata HOM05D006609 ORTHO05D008551 3.6e-74 282.3 258 56.6
BolC9t59347H Brassica oleracea HOM05D006609 ORTHO05D008551 3.6e-74 282.3 258 56.6
SGA_v2.0_scaffold243G44286 Striga asiatica HOM05D006609 ORTHO05D008551 6.1e-74 281.6 251 57.0
Gohir.A05G046200 Gossypium hirsutum HOM05D006609 ORTHO05D008551 2.3e-73 279.6 212 68.4
Nitab4.5_0001309g0120 Nicotiana tabacum HOM05D006609 ORTHO05D008551 5.2e-73 278.5 331 51.1
A10p26110 Brassica napus HOM05D006609 ORTHO05D008551 2.6e-72 276.2 284 51.1
C09p65180 Brassica napus HOM05D006609 ORTHO05D008551 2.8e-71 272.7 258 55.8
HanXRQChr13g0402211 Helianthus annuus HOM05D006609 ORTHO05D008551 4.1e-70 268.9 211 66.4
CsaV3_3G048520 Cucumis sativus L. HOM05D006609 ORTHO05D008551 2.0e-69 266.5 237 60.3
Carub.0006s1012 Capsella rubella HOM05D006609 ORTHO05D008551 8.6e-68 261.2 237 56.1
Zm00001eb337980 Zea mays HOM05D006609 ORTHO05D008551 1.0e-65 254.2 253 57.3
Os01g0200400 Oryza sativa ssp. japonica HOM05D006609 ORTHO05D008551 8.9e-65 251.1 248 56.5
AT5G11640 Arabidopsis thaliana HOM05D006609 ORTHO05D008551 1.7e-63 246.9 187 64.7
BcaB08g37036 Brassica carinata HOM05D006609 ORTHO05D008551 2.9e-63 246.1 261 51.7
DCAR_000757 Daucus carota HOM05D006609 ORTHO05D010582 6.4e-63 245.0 252 53.6
Cpa.g.sc78.16 Carica papaya HOM05D006609 ORTHO05D008551 7.3e-59 231.5 224 59.4
Prupe.1G447200 Prunus persica HOM05D006609 ORTHO05D008551 1.1e-57 227.6 173 64.7
AUR62009264 Chenopodium quinoa HOM05D006609 ORTHO05D008551 5.4e-54 215.3 169 64.5
BcaNung02663 Brassica carinata HOM05D006609 ORTHO05D008551 2.6e-48 196.4 148 65.5
ECA233G1748 Erigeron canadensis HOM05D006609 ORTHO05D008551 8.3e-47 191.4 134 70.1
Lsat_1_v5_gn_5_12101 Lactuca sativa HOM05D006609 ORTHO05D008551 1.1e-43 181.0 148 66.9
vmacro11054 Vaccinium macrocarpon HOM05D006609 ORTHO05D008551 4.3e-43 179.1 487 32.6
unitig_93.g30708 Utricularia gibba HOM05D006609 ORTHO05D008551 1.6e-42 177.2 253 43.1
FAN24G0356 Fragaria x ananassa HOM05D006609 ORTHO05D008551 3.3e-35 152.9 116 64.7
FAN24G3337 Fragaria x ananassa HOM05D006609 ORTHO05D008551 3.3e-35 152.9 116 64.7
HanXRQChr16g0519661 Helianthus annuus HOM05D006609 ORTHO05D008551 8.4e-23 111.7 126 50.0
EL10Ac2g04002 Beta vulgaris HOM05D006609 ORTHO05D008551 4.2e-22 109.4 205 37.1
SEGI_38144 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 7.1e-22 108.6 89 62.9
FAN24G1965 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.2e-21 107.8 88 61.4
SMO144G0045 Selaginella moellendorffii HOM05D006609 ORTHO05D008551 1.3e-20 104.4 154 38.3
QL09p008974 Quercus lobata HOM05D006609 ORTHO05D008551 8.7e-20 101.7 62 82.3
SEGI_39152 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 8.1e-18 95.1 104 47.1
PRCOL_00006038 Prasinoderma coloniale HOM05D006609 ORTHO05D008551 5.3e-17 92.4 221 28.5
Haze_26101 Corylus avellana HOM05D006609 ORTHO05D008551 4.8e-10 69.3 124 37.1
Cre10.g426400 Chlamydomonas reinhardtii HOM05D006609 ORTHO05D008551 2.2e-07 60.5 224 26.3
FAN18G4502 Fragaria x ananassa HOM05D006609 ORTHO05D046171 5.5e-06 55.8 86 40.7
arahy.Tifrunner.gnm1.ann1.WH0W9H Arachis hypogaea HOM05D006609 ORTHO05D008551 7.2e-06 55.5 36 66.7
FvH4_5g31640 Fragaria vesca HOM05D006609 ORTHO05D046171 9.3e-06 55.1 61 47.5


User provided reference genes

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