Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000889 Camellia sinensis var. sinensis HOM05D006544 ORTHO05D008757 5.1e-108 394.4 200 100.0
Actinidia28904 Actinidia chinensis HOM05D006544 ORTHO05D008757 2.2e-58 229.6 198 65.7
Dinv37314 Davidia involucrata HOM05D006544 ORTHO05D008757 1.6e-53 213.4 200 60.5
Oeu016983.1 Olea europaea HOM05D006544 ORTHO05D008757 3.6e-53 212.2 198 58.6
COL.COLO4_26969 Corchorus olitorius HOM05D006544 ORTHO05D008757 7.0e-49 198.0 201 57.2
PGSC0003DMG400010472 Solanum tuberosum HOM05D006544 ORTHO05D008757 1.1e-46 190.7 199 55.8
TAR636G3123 Trochodendron aralioides HOM05D006544 ORTHO05D008757 1.1e-46 190.7 197 55.8
CAN.G1169.17 Capsicum annuum HOM05D006544 ORTHO05D008757 1.9e-46 189.9 199 54.8
Thecc.05G065700 Theobroma cacao HOM05D006544 ORTHO05D008757 1.9e-46 189.9 203 53.7
Lsat_1_v5_gn_6_25121 Lactuca sativa HOM05D006544 ORTHO05D008757 2.5e-46 189.5 184 56.5
Gohir.A09G147100 Gossypium hirsutum HOM05D006544 ORTHO05D008757 4.2e-46 188.7 201 54.7
Gohir.D09G142700 Gossypium hirsutum HOM05D006544 ORTHO05D008757 9.5e-46 187.6 201 54.2
Nitab4.5_0010279g0020 Nicotiana tabacum HOM05D006544 ORTHO05D008757 9.5e-46 187.6 208 53.8
ClCG04G009280 Citrullus lanatus HOM05D006544 ORTHO05D008757 1.6e-45 186.8 201 53.7
THA.LOC104816347 Tarenaya hassleriana HOM05D006544 ORTHO05D008757 1.6e-45 186.8 174 56.9
RcHm_v2.0_Chr3g0470171 Rosa chinensis HOM05D006544 ORTHO05D008757 2.8e-45 186.0 198 55.1
Sopen10g033470 Solanum pennellii HOM05D006544 ORTHO05D008757 2.8e-45 186.0 199 54.8
Nn2g11585 Nelumbo nucifera HOM05D006544 ORTHO05D008757 3.6e-45 185.7 203 55.7
Sed0018427 Sechium edule HOM05D006544 ORTHO05D008757 3.6e-45 185.7 202 54.0
Sc02g0001640 Simmondsia chinensis HOM05D006544 ORTHO05D008757 3.6e-45 185.7 173 59.5
Duzib093G0756 Durio zibethinus HOM05D006544 ORTHO05D008757 4.7e-45 185.3 200 55.5
Ciclev10012670m.g Citrus clementina HOM05D006544 ORTHO05D008757 6.1e-45 184.9 199 53.8
DCAR_020819 Daucus carota HOM05D006544 ORTHO05D008757 6.1e-45 184.9 199 52.3
HanXRQChr13g0401051 Helianthus annuus HOM05D006544 ORTHO05D008757 8.0e-45 184.5 193 54.4
Lalb_Chr06g0171711 Lupinus albus HOM05D006544 ORTHO05D008757 8.0e-45 184.5 200 53.5
MD12G1113500 Malus domestica HOM05D006544 ORTHO05D008757 1.0e-44 184.1 191 52.9
QL07p043583 Quercus lobata HOM05D006544 ORTHO05D008757 1.0e-44 184.1 177 57.1
Solyc10g084040.2 Solanum lycopersicum HOM05D006544 ORTHO05D008757 1.0e-44 184.1 198 54.5
SalBow5G2848 Salvia bowleyana HOM05D006544 ORTHO05D008757 1.8e-44 183.3 200 55.0
GSVIVG01025731001 Vitis vinifera HOM05D006544 ORTHO05D008757 1.8e-44 183.3 174 56.9
Potri.016G092300 Populus trichocarpa HOM05D006544 ORTHO05D008757 2.3e-44 183.0 197 52.3
CiPaw.09G172700 Carya illinoinensis HOM05D006544 ORTHO05D008757 3.0e-44 182.6 192 53.6
Eucgr.A01683 Eucalyptus grandis HOM05D006544 ORTHO05D008757 3.0e-44 182.6 194 53.1
MSTRG.10320 Avicennia marina HOM05D006544 ORTHO05D008757 5.2e-44 181.8 206 50.0
Nitab4.5_0000063g0030 Nicotiana tabacum HOM05D006544 ORTHO05D008757 6.8e-44 181.4 203 54.2
Prupe.6G232400 Prunus persica HOM05D006544 ORTHO05D008757 1.5e-43 180.3 185 56.2
FvH4_6g16320 Fragaria vesca HOM05D006544 ORTHO05D008757 2.6e-43 179.5 152 61.2
CsaV3_6G039870 Cucumis sativus L. HOM05D006544 ORTHO05D008757 3.4e-43 179.1 201 51.7
vmacro07290 Vaccinium macrocarpon HOM05D006544 ORTHO05D008757 3.4e-43 179.1 120 70.8
FAN09G3810 Fragaria x ananassa HOM05D006544 ORTHO05D008757 4.4e-43 178.7 198 55.1
TWI74G1602 Tripterygium wilfordii HOM05D006544 ORTHO05D008757 4.4e-43 178.7 203 52.2
Gorai.006G164200 Gossypium raimondii HOM05D006544 ORTHO05D008757 7.5e-43 177.9 206 52.4
SGA_v2.0_scaffold224G42946 Striga asiatica HOM05D006544 ORTHO05D008757 7.5e-43 177.9 201 50.2
MELO3C024463.2 Cucumis melo HOM05D006544 ORTHO05D008757 9.8e-43 177.6 203 51.2
ECA233G4064 Erigeron canadensis HOM05D006544 ORTHO05D008757 9.8e-43 177.6 201 52.2
PSO339G0933 Papaver somniferum HOM05D006544 ORTHO05D008757 1.3e-42 177.2 193 52.8
AL8G27480 Arabidopsis lyrata HOM05D006544 ORTHO05D008757 3.7e-42 175.6 160 57.5
Aa31LG1G21780 Aethionema arabicum HOM05D006544 ORTHO05D008757 4.9e-42 175.3 185 53.0
MBI18_g04983_MAGBIO Magnolia biondii HOM05D006544 ORTHO05D008757 4.9e-42 175.3 198 52.5
FAN05G5519 Fragaria x ananassa HOM05D006544 ORTHO05D008757 8.3e-42 174.5 183 54.1
PSO801G0526 Papaver somniferum HOM05D006544 ORTHO05D008757 8.3e-42 174.5 189 53.4
AT5G52970 Arabidopsis thaliana HOM05D006544 ORTHO05D008757 1.4e-41 173.7 173 54.9
Migut.L01701 Erythranthe guttata HOM05D006544 ORTHO05D008757 1.4e-41 173.7 192 52.1
Lj2A122G33 Lonicera japonica HOM05D006544 ORTHO05D008757 2.4e-41 172.9 98 78.6
Lj5g0006333 Lotus japonicus HOM05D006544 ORTHO05D008757 2.4e-41 172.9 180 56.1
Peaxi162Scf00311g00059 Petunia axillaris HOM05D006544 ORTHO05D008757 3.1e-41 172.6 196 53.6
arahy.Tifrunner.gnm1.ann1.4P9CL0 Arachis hypogaea HOM05D006544 ORTHO05D008757 5.4e-41 171.8 95 83.2
arahy.Tifrunner.gnm1.ann1.8Z8BZM Arachis hypogaea HOM05D006544 ORTHO05D008757 5.4e-41 171.8 95 83.2
PGR004G0128 Punica granatum HOM05D006544 ORTHO05D008757 5.4e-41 171.8 174 55.7
unitig_578.g16041 Utricularia gibba HOM05D006544 ORTHO05D008757 5.4e-41 171.8 181 50.8
Cfa017605 Carpinus fangiana HOM05D006544 ORTHO05D008757 7.0e-41 171.4 191 53.4
CDE09G0170 Ceratophyllum demersum HOM05D006544 ORTHO05D008757 1.2e-40 170.6 159 53.5
ATR1093G019 Amborella trichopoda HOM05D006544 ORTHO05D008757 3.5e-40 169.1 179 52.5
Manes.09G066600 Manihot esculenta HOM05D006544 ORTHO05D008757 3.5e-40 169.1 201 51.2
HPP92_009890 Vanilla planifolia HOM05D006544 ORTHO05D008757 3.5e-40 169.1 201 52.2
Sp6g39380 Schrenkiella parvula HOM05D006544 ORTHO05D008757 4.5e-40 168.7 152 57.2
BcaC03g13011 Brassica carinata HOM05D006544 ORTHO05D008757 7.8e-40 167.9 184 53.3
Aqoxy2G01774 Aquilegia oxysepala HOM05D006544 ORTHO05D008757 1.0e-39 167.5 161 57.1
Cc06_g04210 Coffea canephora HOM05D006544 ORTHO05D008757 1.0e-39 167.5 206 51.0
Thhalv10014610m.g Eutrema salsugineum HOM05D006544 ORTHO05D008757 1.0e-39 167.5 192 52.1
Carub.0008s1316 Capsella rubella HOM05D006544 ORTHO05D008757 2.3e-39 166.4 183 50.3
AUR62040358 Chenopodium quinoa HOM05D006544 ORTHO05D008757 2.3e-39 166.4 93 77.4
FAN14G3080 Fragaria x ananassa HOM05D006544 ORTHO05D008757 2.3e-39 166.4 91 83.5
Medtr1g063350 Medicago truncatula HOM05D006544 ORTHO05D008757 3.8e-39 165.6 195 52.8
EL10Ac7g16625 Beta vulgaris HOM05D006544 ORTHO05D008757 5.0e-39 165.2 180 50.0
C02p01030 Brassica napus HOM05D006544 ORTHO05D008757 5.0e-39 165.2 168 54.8
BcaB05g21832 Brassica carinata HOM05D006544 ORTHO05D008757 6.6e-39 164.9 177 53.1
BraA02t04758Z Brassica rapa HOM05D006544 ORTHO05D008757 8.6e-39 164.5 93 81.7
Ah.15g092510 Amaranthus hybridus HOM05D006544 ORTHO05D008757 1.1e-38 164.1 93 77.4
Glyma.10G056700 Glycine max HOM05D006544 ORTHO05D008757 1.1e-38 164.1 95 81.1
BolC2t06093H Brassica oleracea HOM05D006544 ORTHO05D008757 1.5e-38 163.7 168 54.2
CANSAT80G1747 Cannabis sativa HOM05D006544 ORTHO05D008757 1.5e-38 163.7 186 50.0
VMungo0720G1694 Vigna mungo HOM05D006544 ORTHO05D008757 1.6e-37 160.2 95 77.9
Ca_11495_v3 Cicer arietinum L. HOM05D006544 ORTHO05D008757 3.6e-37 159.1 95 77.9
TPR.G11258 Trifolium pratense HOM05D006544 ORTHO05D008757 3.6e-37 159.1 95 76.8
Zm00001eb088350 Zea mays HOM05D006544 ORTHO05D008757 3.6e-37 159.1 91 75.8
AUR62042496 Chenopodium quinoa HOM05D006544 ORTHO05D008757 1.4e-36 157.1 185 47.6
Phvul.007G219800 Phaseolus vulgaris HOM05D006544 ORTHO05D008757 1.4e-36 157.1 197 50.8
CARHR265950 Cardamine hirsuta HOM05D006544 ORTHO05D008757 1.8e-36 156.8 188 50.0
Psat6g072960 Pisum sativum HOM05D006544 ORTHO05D008757 3.0e-36 156.0 169 52.1
Sabra16G0097900 Salix brachista HOM05D006544 ORTHO05D008757 4.0e-36 155.6 283 39.2
Rhsim03G0092100 Rhododendron simsii HOM05D006544 ORTHO05D008757 1.6e-32 143.7 183 45.4
SEGI_38453 Sequoiadendron giganteum HOM05D006544 ORTHO05D008757 6.0e-32 141.7 92 65.2
AagrBONN_evm.TU.Sc2ySwM_228.4577 Anthoceros agrestis HOM05D006544 ORTHO05D008757 2.3e-31 139.8 93 68.8
Pp3c13_11800 Physcomitrium patens HOM05D006544 ORTHO05D008757 2.5e-30 136.3 94 66.0
SMO118G0079 Selaginella moellendorffii HOM05D006544 ORTHO05D008757 5.6e-30 135.2 83 71.1
Mapoly0064s0090 Marchantia polymorpha HOM05D006544 ORTHO05D008757 2.8e-29 132.9 83 66.3
Cre15.g636050 Chlamydomonas reinhardtii HOM05D006544 ORTHO05D008757 1.1e-28 131.0 84 69.0
Hund20313 Selenicereus undatus HOM05D006544 ORTHO05D008757 1.1e-25 120.9 82 68.3
Medtr5g037320 Medicago truncatula HOM05D006544 ORTHO05D008757 1.4e-25 120.6 150 49.3
PRCOL_00002491 Prasinoderma coloniale HOM05D006544 ORTHO05D008757 7.0e-25 118.2 84 60.7
CBR_g11899 Chara braunii HOM05D006544 ORTHO05D008757 7.8e-24 114.8 83 59.0
MCO09G250 Micromonas commoda HOM05D006544 ORTHO05D008757 3.9e-23 112.5 84 59.5
Cpa.g.sc54.75 Carica papaya HOM05D006544 ORTHO05D008757 8.6e-23 111.3 57 84.2
Os07g0534000 Oryza sativa ssp. japonica HOM05D006544 ORTHO05D008757 1.5e-22 110.5 85 57.6
Lj5g0024591 Lotus japonicus HOM05D006544 ORTHO05D008757 9.5e-22 107.8 57 82.5
Cpa.g.sc4277.1 Carica papaya HOM05D006544 ORTHO05D008757 1.8e-20 103.6 56 82.1
Cpa.g.sc54.73 Carica papaya HOM05D006544 ORTHO05D008757 1.8e-20 103.6 56 82.1
Nn2g13777 Nelumbo nucifera HOM05D006544 ORTHO05D008757 1.2e-19 100.9 72 66.7
SEGI_20985 Sequoiadendron giganteum HOM05D006544 ORTHO05D008757 3.4e-19 99.4 58 67.2
AagrBONN_evm.TU.Sc2ySwM_344.816 Anthoceros agrestis HOM05D006544 ORTHO05D008757 2.2e-18 96.7 58 69.0
SalBow5G0971 Salvia bowleyana HOM05D008540 ORTHO05D009454 3.5e-16 89.4 48 79.2
HPP92_009893 Vanilla planifolia HOM05D006544 ORTHO05D008757 1.1e-09 67.8 144 43.1
Cpa.g.sc54.74 Carica papaya HOM05D006544 ORTHO05D008757 3.2e-09 66.2 141 41.1
MD04G1093800 Malus domestica HOM05D006544 ORTHO05D247365 8.7e-07 58.2 35 74.3


User provided reference genes

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