Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000841 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D017545 5.8e-40 167.2 87 100.0
CSS0033315 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D017545 1.4e-38 162.5 87 97.7
CSS0050323 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D017545 1.7e-28 129.0 104 74.0
CSS0020146 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D017545 2.6e-16 88.6 96 59.4
CSS0021518 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 5.1e-12 74.3 60 68.3
Hma1.2p1_0033F.1_g020380 Hydrangea macrophylla HOM05D001826 ORTHO05D004184 1.1e-11 73.2 59 67.8
vmacro13307 Vaccinium macrocarpon HOM05D001826 ORTHO05D004184 2.5e-11 72.0 59 66.1
CSS0017008 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 1.1e-09 66.6 58 62.1
CSS0033058 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 1.1e-09 66.6 58 62.1
MSTRG.20812 Avicennia marina HOM05D001826 ORTHO05D004184 1.4e-09 66.2 59 61.0
Actinidia12714 Actinidia chinensis HOM05D001826 ORTHO05D004184 1.8e-09 65.9 59 59.3
Actinidia33431 Actinidia chinensis HOM05D001826 ORTHO05D004184 1.8e-09 65.9 58 60.3
AUR62004319 Chenopodium quinoa HOM05D001826 ORTHO05D004184 3.1e-09 65.1 58 60.3
ClCG05G001700 Citrullus lanatus HOM05D001826 ORTHO05D004184 3.1e-09 65.1 59 61.0
MELO3C006129.2 Cucumis melo HOM05D001826 ORTHO05D004184 3.1e-09 65.1 59 61.0
CsaV3_3G009090 Cucumis sativus L. HOM05D001826 ORTHO05D004184 3.1e-09 65.1 59 61.0
Lj7A516T61 Lonicera japonica HOM05D001826 ORTHO05D004184 3.1e-09 65.1 59 59.3
Sabra14G0058600 Salix brachista HOM05D001826 ORTHO05D004184 3.1e-09 65.1 59 59.3
Sed0024442 Sechium edule HOM05D001826 ORTHO05D004184 3.1e-09 65.1 58 63.8
MSTRG.4866 Avicennia marina HOM05D001826 ORTHO05D004184 6.9e-09 63.9 57 59.6
AUR62033325 Chenopodium quinoa HOM05D001826 ORTHO05D004184 9.0e-09 63.5 58 60.3
AUR62033334 Chenopodium quinoa HOM05D001826 ORTHO05D004184 9.0e-09 63.5 58 60.3
Actinidia20930 Actinidia chinensis HOM05D001826 ORTHO05D004184 1.2e-08 63.2 59 61.0
HanXRQChr03g0093471 Helianthus annuus HOM05D001826 ORTHO05D004184 1.5e-08 62.8 59 57.6
PGSC0003DMG400000153 Solanum tuberosum HOM05D001826 ORTHO05D004184 1.5e-08 62.8 59 55.9
Sed0005198 Sechium edule HOM05D001826 ORTHO05D004184 2.0e-08 62.4 59 59.3
TWI23G0863 Tripterygium wilfordii HOM05D001826 ORTHO05D004184 2.0e-08 62.4 58 62.1
vmacro20955 Vaccinium macrocarpon HOM05D001826 ORTHO05D004184 2.0e-08 62.4 59 62.7
Ah.05g176450 Amaranthus hybridus HOM05D001826 ORTHO05D004184 2.6e-08 62.0 59 55.9
Peaxi162Scf00397g00111 Petunia axillaris HOM05D001826 ORTHO05D004184 2.6e-08 62.0 59 55.9
Rhsim07G0018000 Rhododendron simsii HOM05D001826 ORTHO05D004184 2.6e-08 62.0 59 57.6
Hund16940 Selenicereus undatus HOM05D001826 ORTHO05D004184 2.6e-08 62.0 59 61.0
Hund27301 Selenicereus undatus HOM05D001826 ORTHO05D004184 2.6e-08 62.0 58 60.3
TWI59G0720 Tripterygium wilfordii HOM05D001826 ORTHO05D004184 2.6e-08 62.0 58 62.1
TWI59G1454 Tripterygium wilfordii HOM05D001826 ORTHO05D004184 2.6e-08 62.0 58 62.1
Manes.05G037400 Manihot esculenta HOM05D001826 ORTHO05D004184 3.4e-08 61.6 59 57.6
Dinv32449 Davidia involucrata HOM05D001826 ORTHO05D004184 4.4e-08 61.2 58 63.8
Nn1g01431 Nelumbo nucifera HOM05D001826 ORTHO05D017545 4.4e-08 61.2 60 56.7
Nitab4.5_0001620g0100 Nicotiana tabacum HOM05D001826 ORTHO05D004184 4.4e-08 61.2 59 55.9
Oeu014675.3 Olea europaea HOM05D001826 ORTHO05D004184 4.4e-08 61.2 58 55.2
GSVIVG01026846001 Vitis vinifera HOM05D001826 ORTHO05D004184 4.4e-08 61.2 58 60.3
Nn6g33530 Nelumbo nucifera HOM05D001826 ORTHO05D004184 5.8e-08 60.8 58 56.9
Nitab4.5_0003111g0100 Nicotiana tabacum HOM05D001826 ORTHO05D004184 7.6e-08 60.5 59 54.2
Potri.014G080800 Populus trichocarpa HOM05D001826 ORTHO05D004184 7.6e-08 60.5 59 55.9
SalBow5G0163 Salvia bowleyana HOM05D001826 ORTHO05D004184 7.6e-08 60.5 58 60.3
SalBow5G2532 Salvia bowleyana HOM05D001826 ORTHO05D004184 7.6e-08 60.5 58 60.3
Ciclev10018563m.g Citrus clementina HOM05D001826 ORTHO05D004184 9.9e-08 60.1 58 56.9
ECA236G3271 Erigeron canadensis HOM05D001826 ORTHO05D004184 9.9e-08 60.1 59 55.9
Hma1.2p1_0001F.1_g001660 Hydrangea macrophylla HOM05D001826 ORTHO05D004184 9.9e-08 60.1 59 52.5
PGR042G0308 Punica granatum HOM05D001826 ORTHO05D004184 9.9e-08 60.1 58 56.9
CAN.G78.31 Capsicum annuum HOM05D001826 ORTHO05D004184 1.3e-07 59.7 59 55.9
Duzib133G0016 Durio zibethinus HOM05D001826 ORTHO05D004184 1.3e-07 59.7 58 56.9
Duzib138G1216 Durio zibethinus HOM05D001826 ORTHO05D004184 1.3e-07 59.7 58 55.2
ECA240G3725 Erigeron canadensis HOM05D001826 ORTHO05D004184 1.3e-07 59.7 59 55.9
Lalb_Chr19g0127041 Lupinus albus HOM05D001826 ORTHO05D004184 1.3e-07 59.7 58 55.2
QL08p049532 Quercus lobata HOM05D001826 ORTHO05D004184 1.3e-07 59.7 59 55.9
Potri.002G157200 Populus trichocarpa HOM05D001826 ORTHO05D004184 1.7e-07 59.3 59 55.9
HanXRQChr04g0121631 Helianthus annuus HOM05D001826 ORTHO05D004184 2.2e-07 58.9 59 55.9
HanXRQChr13g0426341 Helianthus annuus HOM05D001826 ORTHO05D004184 2.2e-07 58.9 59 54.2
Lalb_Chr10g0097211 Lupinus albus HOM05D001826 ORTHO05D004184 2.2e-07 58.9 58 58.6
Solyc01g094290.3 Solanum lycopersicum HOM05D001826 ORTHO05D004184 2.2e-07 58.9 59 55.9
Sopen01g038090 Solanum pennellii HOM05D001826 ORTHO05D004184 2.2e-07 58.9 59 55.9
TAR374G0698 Trochodendron aralioides HOM05D001826 ORTHO05D017545 2.2e-07 58.9 59 57.6
TAR375G0082 Trochodendron aralioides HOM05D001826 ORTHO05D004184 2.2e-07 58.9 59 57.6
arahy.Tifrunner.gnm1.ann1.8F4Z70 Arachis hypogaea HOM05D001826 ORTHO05D004184 2.9e-07 58.5 58 56.9
arahy.Tifrunner.gnm1.ann1.SLD8LW Arachis hypogaea HOM05D001826 ORTHO05D004184 2.9e-07 58.5 58 56.9
HanXRQChr06g0169881 Helianthus annuus HOM05D001826 ORTHO05D004184 2.9e-07 58.5 59 55.9
Lj1g0018622 Lotus japonicus HOM05D001826 ORTHO05D004184 2.9e-07 58.5 58 56.9
Prupe.2G162700 Prunus persica HOM05D001826 ORTHO05D004184 2.9e-07 58.5 59 54.2
TPR.G4440 Trifolium pratense HOM05D001826 ORTHO05D004184 3.8e-07 58.2 58 55.2
CiPaw.01G057800 Carya illinoinensis HOM05D001826 ORTHO05D004184 4.9e-07 57.8 59 50.8
MD01G1053700 Malus domestica HOM05D001826 ORTHO05D004184 4.9e-07 57.8 59 50.8
Aqoxy5G04023 Aquilegia oxysepala HOM05D001826 ORTHO05D004184 6.4e-07 57.4 58 56.9
Cc02_g37680 Coffea canephora HOM05D001826 ORTHO05D004184 6.4e-07 57.4 58 55.2
Thecc.01G363300 Theobroma cacao HOM05D001826 ORTHO05D004184 6.4e-07 57.4 58 55.2
DCAR_006915 Daucus carota HOM05D001826 ORTHO05D004184 8.4e-07 57.0 59 52.5
DCAR_015945 Daucus carota HOM05D001826 ORTHO05D004184 8.4e-07 57.0 59 55.9
FvH4_7g13660 Fragaria vesca HOM05D001826 ORTHO05D004184 8.4e-07 57.0 59 52.5
FAN03G3317 Fragaria x ananassa HOM05D001826 ORTHO05D004184 8.4e-07 57.0 59 52.5
Lsat_1_v5_gn_3_136621 Lactuca sativa HOM05D001826 ORTHO05D004184 8.4e-07 57.0 59 54.2
Sabra02G0124800 Salix brachista HOM05D001826 ORTHO05D004184 8.4e-07 57.0 59 54.2
Gohir.D12G108900 Gossypium hirsutum HOM05D001826 ORTHO05D004184 1.1e-06 56.6 55 56.4
Gorai.008G118000 Gossypium raimondii HOM05D001826 ORTHO05D004184 1.1e-06 56.6 55 56.4
DCAR_008601 Daucus carota HOM05D001826 ORTHO05D004184 1.4e-06 56.2 58 53.4
Migut.B01724 Erythranthe guttata HOM05D001826 ORTHO05D004184 1.4e-06 56.2 59 57.6
MD07G1141400 Malus domestica HOM05D001826 ORTHO05D004184 1.4e-06 56.2 59 50.8
Medtr8g031550 Medicago truncatula HOM05D001826 ORTHO05D004184 1.9e-06 55.8 57 54.4
Phvul.008G067800 Phaseolus vulgaris HOM05D001826 ORTHO05D004184 1.9e-06 55.8 58 53.4
FAN01G1586 Fragaria x ananassa HOM05D001826 ORTHO05D004184 2.4e-06 55.5 60 53.3
Gohir.A12G105000 Gossypium hirsutum HOM05D001826 ORTHO05D004184 2.4e-06 55.5 55 56.4
EL10Ac1g00529 Beta vulgaris HOM05D001826 ORTHO05D004184 3.2e-06 55.1 58 53.4
CDE06G1001 Ceratophyllum demersum HOM05D001826 ORTHO05D004184 3.2e-06 55.1 59 55.9
Ca_23666_v3 Cicer arietinum L. HOM05D001826 ORTHO05D004184 3.2e-06 55.1 57 52.6
Glyma.09G262000 Glycine max HOM05D001826 ORTHO05D004184 3.2e-06 55.1 58 53.4
Aa31LG1G11160 Aethionema arabicum HOM05D001826 ORTHO05D004184 4.2e-06 54.7 58 53.4
Glyma.18G230100 Glycine max HOM05D001826 ORTHO05D004184 4.2e-06 54.7 58 53.4
RcHm_v2.0_Chr1g0353741 Rosa chinensis HOM05D001826 ORTHO05D004184 4.2e-06 54.7 58 53.4
Cpa.g.sc18.224 Carica papaya HOM05D001826 ORTHO05D004184 5.4e-06 54.3 59 55.9
Lj9C580G11 Lonicera japonica HOM05D001826 ORTHO05D004184 7.1e-06 53.9 59 49.2
CiPaw.02G028500 Carya illinoinensis HOM05D001826 ORTHO05D004184 9.3e-06 53.5 59 50.8


User provided reference genes

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