Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000839 Camellia sinensis var. sinensis HOM05D002294 ORTHO05D002367 4.3e-34 147.5 80 100.0
CSS0020221 Camellia sinensis var. sinensis HOM05D002294 ORTHO05D002367 8.5e-30 133.3 79 92.4
CiPaw.06G091400 Carya illinoinensis HOM05D002294 ORTHO05D002367 2.6e-23 111.7 76 72.4
Dinv33811 Davidia involucrata HOM05D002294 ORTHO05D002367 1.3e-22 109.4 78 75.6
QL03p071250 Quercus lobata HOM05D002294 ORTHO05D002367 2.9e-22 108.2 78 71.8
Dinv11485 Davidia involucrata HOM05D002294 ORTHO05D002367 3.8e-22 107.8 77 75.3
Sc13g0003620 Simmondsia chinensis HOM05D002294 ORTHO05D002367 3.6e-20 101.3 71 70.4
GSVIVG01007636001 Vitis vinifera HOM05D002294 ORTHO05D002367 3.6e-20 101.3 78 69.2
Atru.chr9.2591 Acer truncatum HOM05D002294 ORTHO05D002367 1.4e-19 99.4 72 70.8
RcHm_v2.0_Chr7g0192461 Rosa chinensis HOM05D002294 ORTHO05D002367 2.3e-19 98.6 71 69.0
Hma1.2p1_0221F.1_g093080 Hydrangea macrophylla HOM05D002294 ORTHO05D002367 3.9e-19 97.8 75 69.3
Prupe.5G164800 Prunus persica HOM05D002294 ORTHO05D002367 5.1e-19 97.4 83 65.1
Gohir.D12G188228 Gossypium hirsutum HOM05D002294 ORTHO05D002367 6.7e-19 97.1 76 67.1
TWI23G0110 Tripterygium wilfordii HOM05D002294 ORTHO05D002367 6.7e-19 97.1 72 68.1
RcHm_v2.0_Chr7g0192431 Rosa chinensis HOM05D002294 ORTHO05D002367 8.8e-19 96.7 71 66.2
Aqoxy7G03961 Aquilegia oxysepala HOM05D002294 ORTHO05D002367 1.1e-18 96.3 79 65.8
C03p05970 Brassica napus HOM05D002294 ORTHO05D002367 1.1e-18 96.3 74 66.2
A03p05170 Brassica napus HOM05D002294 ORTHO05D002367 1.5e-18 95.9 75 66.7
BraA03t09856Z Brassica rapa HOM05D002294 ORTHO05D002367 1.5e-18 95.9 75 66.7
Ciclev10022242m.g Citrus clementina HOM05D002294 ORTHO05D002367 2.0e-18 95.5 74 66.2
TAR374G1207 Trochodendron aralioides HOM05D002294 ORTHO05D002367 2.0e-18 95.5 75 66.7
C09p65060 Brassica napus HOM05D002294 ORTHO05D002367 3.3e-18 94.7 74 64.9
Duzib205G0024 Durio zibethinus HOM05D002294 ORTHO05D002367 3.3e-18 94.7 76 65.8
BolC3t13108H Brassica oleracea HOM05D002294 ORTHO05D002367 4.4e-18 94.4 75 65.3
Thhalv10014577m.g Eutrema salsugineum HOM05D002294 ORTHO05D002367 4.4e-18 94.4 75 65.3
Medtr3g058620 Medicago truncatula HOM05D002294 ORTHO05D002367 4.4e-18 94.4 71 67.6
BcaB01g05457 Brassica carinata HOM05D002294 ORTHO05D002367 5.7e-18 94.0 75 64.0
A10p25980 Brassica napus HOM05D002294 ORTHO05D002367 5.7e-18 94.0 74 64.9
Cpa.g.sc59.127 Carica papaya HOM05D002294 ORTHO05D002367 7.4e-18 93.6 73 65.8
Cfa008892 Carpinus fangiana HOM05D000235 ORTHO05D000147 7.4e-18 93.6 71 69.0
DCAR_026178 Daucus carota HOM05D002294 ORTHO05D002367 7.4e-18 93.6 74 67.6
Nn1g09140 Nelumbo nucifera HOM05D002294 ORTHO05D002367 7.4e-18 93.6 71 71.8
CARHR201460 Cardamine hirsuta HOM05D002294 ORTHO05D002367 9.7e-18 93.2 76 64.5
Ca_20195_v3 Cicer arietinum L. HOM05D002294 ORTHO05D002367 9.7e-18 93.2 78 64.1
Peaxi162Scf00021g02521 Petunia axillaris HOM05D002294 ORTHO05D002367 9.7e-18 93.2 70 71.4
BcaC04g19197 Brassica carinata HOM05D002294 ORTHO05D002367 1.3e-17 92.8 75 62.7
FAN13G0475 Fragaria x ananassa HOM05D002294 ORTHO05D002367 1.3e-17 92.8 71 62.0
Glyma.18G078700 Glycine max HOM05D002294 ORTHO05D002367 1.3e-17 92.8 73 67.1
VMungo0540G0960 Vigna mungo HOM05D002294 ORTHO05D002367 1.3e-17 92.8 74 67.6
BraA02t05097Z Brassica rapa HOM05D002294 ORTHO05D002367 1.7e-17 92.4 76 64.5
Glyma.08G265900 Glycine max HOM05D002294 ORTHO05D002367 1.7e-17 92.4 73 65.8
Nn7g38397 Nelumbo nucifera HOM05D002294 ORTHO05D002367 1.7e-17 92.4 58 77.6
PGSC0003DMG400016394 Solanum tuberosum HOM05D004490 ORTHO05D002367 1.7e-17 92.4 70 70.0
BcaNung02655 Brassica carinata HOM05D002294 ORTHO05D002367 2.2e-17 92.0 76 64.5
ATR0057G012 Amborella trichopoda HOM05D002294 ORTHO05D002367 2.8e-17 91.7 73 64.4
Potri.012G086800 Populus trichocarpa HOM05D002294 ORTHO05D002367 2.8e-17 91.7 71 67.6
QL10p006794 Quercus lobata HOM05D002294 ORTHO05D002367 2.8e-17 91.7 78 65.4
Sabra12G0062200 Salix brachista HOM05D002294 ORTHO05D002367 2.8e-17 91.7 71 67.6
A02p01180 Brassica napus HOM05D002294 ORTHO05D002367 3.7e-17 91.3 76 63.2
ClCG01G013640 Citrullus lanatus HOM05D002294 ORTHO05D002367 3.7e-17 91.3 73 67.1
Sopen01g003860 Solanum pennellii HOM05D002294 ORTHO05D002367 3.7e-17 91.3 77 63.6
CANSAT64G2646 Cannabis sativa HOM05D002294 ORTHO05D002367 4.8e-17 90.9 77 62.3
ECA248G3964 Erigeron canadensis HOM05D002294 ORTHO05D002367 4.8e-17 90.9 73 63.0
Psat7g123320 Pisum sativum HOM05D002294 ORTHO05D002367 4.8e-17 90.9 79 62.0
Sp6g31850 Schrenkiella parvula HOM05D002294 ORTHO05D002367 4.8e-17 90.9 75 64.0
Thecc.03G115800 Theobroma cacao HOM05D002294 ORTHO05D002367 4.8e-17 90.9 76 64.5
Haze_17593 Corylus avellana HOM05D002294 ORTHO05D002367 6.3e-17 90.5 77 63.6
Lalb_Chr25g0286841 Lupinus albus HOM05D002294 ORTHO05D002367 6.3e-17 90.5 75 66.7
Manes.06G111150 Manihot esculenta HOM05D002294 ORTHO05D002367 6.3e-17 90.5 72 66.7
Haze_11976 Corylus avellana HOM05D002294 ORTHO05D002367 8.2e-17 90.1 76 64.5
THA.LOC104806036 Tarenaya hassleriana HOM05D002294 ORTHO05D002367 8.2e-17 90.1 74 68.9
FAN04G2356 Fragaria x ananassa HOM05D002294 ORTHO05D002367 1.1e-16 89.7 70 60.0
CsaV3_1G014020 Cucumis sativus L. HOM05D000724 ORTHO05D002367 1.4e-16 89.4 73 67.1
FvH4_5g06380 Fragaria vesca HOM05D002294 ORTHO05D002367 1.4e-16 89.4 70 62.9
FAN08G2480 Fragaria x ananassa HOM05D002294 ORTHO05D002367 1.4e-16 89.4 70 62.9
FAN18G1540 Fragaria x ananassa HOM05D002294 ORTHO05D002367 1.4e-16 89.4 70 62.9
Phvul.006G055700 Phaseolus vulgaris HOM05D002294 ORTHO05D002367 1.4e-16 89.4 76 64.5
Carub.0006s1028 Capsella rubella HOM05D002294 ORTHO05D002367 1.8e-16 89.0 73 63.0
MELO3C004891.2 Cucumis melo HOM05D002294 ORTHO05D002367 1.8e-16 89.0 72 63.9
Lsat_1_v5_gn_4_77441 Lactuca sativa HOM05D002294 ORTHO05D002367 1.8e-16 89.0 73 64.4
Sed0005556 Sechium edule HOM05D002294 ORTHO05D002367 1.8e-16 89.0 73 63.0
Sed0010894 Sechium edule HOM05D002294 ORTHO05D002367 1.8e-16 89.0 65 66.2
Solyc01g008340.3 Solanum lycopersicum HOM05D002294 ORTHO05D002367 1.8e-16 89.0 77 62.3
THA.LOC104817995 Tarenaya hassleriana HOM05D002294 ORTHO05D002367 1.8e-16 89.0 72 68.1
TPR.G30742 Trifolium pratense HOM05D002294 ORTHO05D002367 1.8e-16 89.0 73 63.0
ECA232G0941 Erigeron canadensis HOM05D002294 ORTHO05D002367 3.1e-16 88.2 68 63.2
HanXRQChr16g0504741 Helianthus annuus HOM05D002294 ORTHO05D002367 3.1e-16 88.2 76 63.2
AUR62028643 Chenopodium quinoa HOM05D002294 ORTHO05D002367 5.3e-16 87.4 74 64.9
Ca_03374_v3 Cicer arietinum L. HOM05D002294 ORTHO05D002367 5.3e-16 87.4 78 62.8
Lj6g0017256 Lotus japonicus HOM05D002294 ORTHO05D002367 5.3e-16 87.4 71 63.4
THA.LOC104824989 Tarenaya hassleriana HOM05D002294 ORTHO05D002367 5.3e-16 87.4 74 67.6
CAN.G282.40 Capsicum annuum HOM05D002294 ORTHO05D002367 7.0e-16 87.0 62 69.4
Cfa015569 Carpinus fangiana HOM05D002294 ORTHO05D002367 7.0e-16 87.0 77 61.0
AT4G11630 Arabidopsis thaliana HOM05D002294 ORTHO05D002367 9.1e-16 86.7 75 64.0
MD14G1170700 Malus domestica HOM05D002294 ORTHO05D002367 9.1e-16 86.7 74 63.5
AT1G24240 Arabidopsis thaliana HOM05D002294 ORTHO05D002367 1.2e-15 86.3 75 62.7
AUR62008066 Chenopodium quinoa HOM05D002294 ORTHO05D002367 1.2e-15 86.3 71 64.8
Manes.14G060000 Manihot esculenta HOM05D002294 ORTHO05D002367 1.2e-15 86.3 72 61.1
AL6G22500 Arabidopsis lyrata HOM05D002294 ORTHO05D002367 1.6e-15 85.9 74 63.5
Gohir.A07G056300 Gossypium hirsutum HOM05D002294 ORTHO05D002367 1.6e-15 85.9 73 60.3
Gohir.D07G060600 Gossypium hirsutum HOM05D002294 ORTHO05D002367 1.6e-15 85.9 73 60.3
Haze_11924 Corylus avellana HOM05D002294 ORTHO05D002367 2.0e-15 85.5 77 61.0
Nitab4.5_0009336g0020 Nicotiana tabacum HOM05D002294 ORTHO05D002367 2.0e-15 85.5 70 65.7
Aa31LG3G15460 Aethionema arabicum HOM05D002294 ORTHO05D002367 2.6e-15 85.1 75 61.3
CDE06G0567 Ceratophyllum demersum HOM05D002294 ORTHO05D002367 3.5e-15 84.7 72 55.6
Eucgr.B00214 Eucalyptus grandis HOM05D002294 ORTHO05D002367 3.5e-15 84.7 78 56.4
BolC9t59334H Brassica oleracea HOM05D002294 ORTHO05D002367 4.5e-15 84.3 86 54.7
COL.COLO4_32207 Corchorus olitorius HOM05D002294 ORTHO05D002367 4.5e-15 84.3 79 59.5
MD06G1165200 Malus domestica HOM05D002294 ORTHO05D002367 4.5e-15 84.3 83 57.8
Ah.05g174260 Amaranthus hybridus HOM05D002294 ORTHO05D002367 5.9e-15 84.0 78 57.7
BraA10t44660Z Brassica rapa HOM05D002294 ORTHO05D002367 5.9e-15 84.0 89 53.9
CDE04G0585 Ceratophyllum demersum HOM05D002294 ORTHO05D002367 5.9e-15 84.0 70 58.6
Nitab4.5_0000069g0090 Nicotiana tabacum HOM05D002294 ORTHO05D002367 5.9e-15 84.0 70 64.3
PGR083G1112 Punica granatum HOM05D002294 ORTHO05D002367 7.7e-15 83.6 71 62.0
AUR62004210 Chenopodium quinoa HOM05D002294 ORTHO05D002367 1.0e-14 83.2 67 64.2
EL10Ac1g00885 Beta vulgaris HOM05D002294 ORTHO05D002367 1.7e-14 82.4 70 62.9
arahy.Tifrunner.gnm1.ann1.D3JFX3 Arachis hypogaea HOM05D002294 ORTHO05D002367 5.0e-14 80.9 79 58.2
Hund17023 Selenicereus undatus HOM05D002294 ORTHO05D002367 5.0e-14 80.9 72 59.7
Oeu040866.1 Olea europaea HOM05D002294 ORTHO05D002367 6.5e-14 80.5 56 67.9
AUR62013638 Chenopodium quinoa HOM05D002294 ORTHO05D002367 8.5e-14 80.1 71 62.0
unitig_61.g26471 Utricularia gibba HOM05D002294 ORTHO05D002367 1.1e-13 79.7 56 66.1
SalBow5G4275 Salvia bowleyana HOM05D002294 ORTHO05D002367 7.2e-13 77.0 72 56.9
HPP92_022648 Vanilla planifolia HOM05D002294 ORTHO05D002367 9.4e-13 76.6 75 56.0
HPP92_022668 Vanilla planifolia HOM05D002294 ORTHO05D002367 9.4e-13 76.6 75 56.0
SEGI_18760 Sequoiadendron giganteum HOM05D002294 ORTHO05D002367 3.6e-12 74.7 54 68.5
SEGI_39712 Sequoiadendron giganteum HOM05D002294 ORTHO05D002367 3.6e-12 74.7 54 68.5
AT5G11750 Arabidopsis thaliana HOM05D002294 ORTHO05D002367 4.7e-12 74.3 97 48.5
SEGI_23439 Sequoiadendron giganteum HOM05D002294 ORTHO05D002367 4.7e-12 74.3 54 68.5
Migut.O00165 Erythranthe guttata HOM05D002294 ORTHO05D002367 8.0e-12 73.6 75 54.7
SGA_v2.0_scaffold25G10794 Striga asiatica HOM05D002294 ORTHO05D002367 1.4e-11 72.8 55 65.5
Zm00001eb174060 Zea mays HOM05D002294 ORTHO05D002367 4.0e-11 71.2 76 50.0
Zm00001eb260530 Zea mays HOM05D002294 ORTHO05D002367 8.8e-11 70.1 76 48.7
Gorai.001G064300 Gossypium raimondii HOM05D002294 ORTHO05D002367 2.0e-10 68.9 73 53.4
Os02g0205000 Oryza sativa ssp. japonica HOM05D002294 ORTHO05D002367 4.4e-10 67.8 79 49.4
PSO017G4224 Papaver somniferum HOM05D002294 ORTHO05D002367 1.3e-09 66.2 72 45.8
PSO063G0733 Papaver somniferum HOM05D002294 ORTHO05D002367 1.3e-09 66.2 73 47.9
PSO675G6677 Papaver somniferum HOM05D002294 ORTHO05D002367 1.3e-09 66.2 73 47.9
MBI17_g44276_MAGBIO Magnolia biondii HOM05D002294 ORTHO05D002367 2.2e-09 65.5 73 50.7
Rhsim01G0251600 Rhododendron simsii HOM05D002294 ORTHO05D002367 2.2e-09 65.5 75 50.7
vmacro16648 Vaccinium macrocarpon HOM05D002294 ORTHO05D002367 4.8e-09 64.3 50 74.0
Lj1A261T33 Lonicera japonica HOM05D002294 ORTHO05D002367 1.1e-08 63.2 75 50.7
QL03p071280 Quercus lobata HOM05D002294 ORTHO05D002367 3.1e-08 61.6 77 45.5
AagrBONN_evm.TU.Sc2ySwM_368.1767 Anthoceros agrestis HOM05D002294 ORTHO05D002367 3.5e-07 58.2 54 51.9
Pp3c24_12530 Physcomitrium patens HOM05D002294 ORTHO05D002367 3.5e-07 58.2 52 55.8
Pp3c23_6090 Physcomitrium patens HOM05D002294 ORTHO05D002367 1.7e-06 55.8 69 46.4
DCAR_016450 Daucus carota HOM05D002294 ORTHO05D002367 2.2e-06 55.5 31 83.9
Rhsim12G0168300 Rhododendron simsii HOM05D002294 ORTHO05D002367 5.0e-06 54.3 29 86.2
vmacro16647 Vaccinium macrocarpon HOM05D002294 ORTHO05D002367 6.5e-06 53.9 30 83.3


User provided reference genes

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