Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 9.8e-189 663.3 333 100.0
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 6.6e-177 624.0 333 95.5
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 8.1e-159 563.9 320 85.3
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 6.8e-158 560.8 335 83.3
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 1.2e-157 560.1 337 80.7
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 1.5e-157 559.7 330 83.6
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 2.6e-157 558.9 331 83.7
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 5.8e-157 557.8 333 82.6
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 1.3e-156 556.6 333 83.2
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 1.7e-156 556.2 337 82.5
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 2.2e-156 555.8 332 82.5
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 2.9e-156 555.4 330 84.2
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 2.9e-156 555.4 334 81.4
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 3.8e-156 555.1 334 83.5
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 8.4e-156 553.9 320 85.0
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.4e-155 553.1 334 81.7
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 1.4e-155 553.1 332 81.9
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 1.9e-155 552.7 339 80.5
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 2.4e-155 552.4 334 81.7
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 2.4e-155 552.4 333 81.7
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 3.2e-155 552.0 335 80.6
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 5.4e-155 551.2 331 83.4
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 5.4e-155 551.2 332 83.1
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 5.4e-155 551.2 377 75.1
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 7.1e-155 550.8 320 82.8
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 7.1e-155 550.8 333 81.7
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 9.2e-155 550.4 330 82.4
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 1.2e-154 550.1 333 82.0
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 2.1e-154 549.3 337 80.1
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 3.5e-154 548.5 333 81.4
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 7.8e-154 547.4 331 80.4
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 6.6e-153 544.3 320 83.1
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 1.5e-152 543.1 319 82.4
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 1.9e-152 542.7 333 80.5
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 5.6e-152 541.2 337 80.4
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.6e-152 541.2 334 79.9
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 5.6e-152 541.2 327 80.1
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.2e-151 540.0 332 80.4
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 2.8e-151 538.9 331 79.8
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 3.1e-150 535.4 333 79.3
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 4.0e-150 535.0 337 80.1
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 4.0e-150 535.0 333 78.7
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 9.0e-150 533.9 321 81.0
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 1.5e-149 533.1 337 78.0
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 1.5e-149 533.1 316 82.3
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 2.0e-149 532.7 320 81.6
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.4e-149 531.9 347 76.9
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 3.4e-149 531.9 374 71.9
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 4.4e-149 531.6 339 76.7
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 5.8e-149 531.2 338 77.5
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 5.8e-149 531.2 333 77.8
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 7.6e-149 530.8 371 72.2
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 7.6e-149 530.8 333 77.8
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 9.9e-149 530.4 337 78.3
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.8e-148 528.5 347 76.9
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 4.9e-148 528.1 332 78.0
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 6.4e-148 527.7 337 77.4
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 8.4e-148 527.3 333 79.0
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 1.1e-147 526.9 319 80.3
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 1.1e-147 526.9 328 78.4
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 1.9e-147 526.2 338 76.6
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 1.9e-147 526.2 338 76.6
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 3.2e-147 525.4 333 78.7
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 7.1e-147 524.2 328 77.7
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 1.2e-146 523.5 325 78.8
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 3.5e-146 521.9 341 76.2
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 3.5e-146 521.9 320 79.4
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 4.6e-146 521.5 319 80.3
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 6.0e-146 521.2 326 77.6
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 1.0e-145 520.4 324 78.1
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 2.3e-145 519.2 328 76.8
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 3.0e-145 518.8 333 76.6
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 3.0e-145 518.8 333 76.6
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 5.1e-145 518.1 374 70.6
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 4.3e-144 515.0 322 80.4
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 9.6e-144 513.8 330 77.0
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 1.3e-143 513.5 327 78.9
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 1.3e-143 513.5 327 78.9
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 2.1e-143 512.7 403 68.0
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 6.2e-143 511.1 335 74.9
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 8.1e-143 510.8 335 74.9
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 1.1e-142 510.4 337 75.7
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 3.1e-142 508.8 332 74.1
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 1.2e-141 506.9 332 75.6
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 1.5e-141 506.5 335 75.5
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 9.9e-141 503.8 326 76.7
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 9.9e-141 503.8 320 75.0
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 1.9e-139 499.6 304 79.3
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 1.9e-139 499.6 337 74.2
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 4.2e-139 498.4 333 73.0
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 1.3e-135 486.9 338 72.8
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 1.6e-135 486.5 331 73.1
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 2.6e-133 479.2 337 71.8
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.3e-129 466.8 316 72.5
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 1.3e-127 460.3 334 67.7
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 7.6e-125 451.1 336 65.8
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 4.6e-122 441.8 340 65.6
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 6.0e-122 441.4 250 86.8
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 1.0e-121 440.7 250 85.6
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 3.0e-121 439.1 329 66.9
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 2.2e-119 433.0 250 83.6
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 1.1e-118 430.6 243 86.4
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 3.1e-118 429.1 249 84.3
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 2.0e-112 409.8 332 64.8
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.3e-111 407.1 331 62.5
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 2.0e-109 399.8 373 60.6
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 2.6e-109 399.4 316 65.8
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 7.7e-109 397.9 331 63.1
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 1.7e-103 380.2 242 74.0
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 2.8e-95 352.8 317 57.4
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 4.4e-88 328.9 198 81.8
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 3.2e-83 312.8 232 66.8
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 2.5e-75 286.6 218 69.3
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 1.4e-70 270.8 330 46.7
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 1.6e-66 257.3 241 56.4
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 6.8e-65 251.9 263 50.6
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 3.7e-63 246.1 136 86.8
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 2.4e-62 243.4 346 45.1
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 4.6e-61 239.2 137 82.5
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 1.4e-57 227.6 176 64.2
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 9.8e-56 221.5 130 80.8
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.3e-44 183.7 133 72.9
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 6.6e-44 182.2 133 72.2
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.7e-42 176.0 144 66.7
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 1.5e-40 171.0 114 74.6
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.4e-40 169.9 126 71.4
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.4e-40 169.9 126 71.4
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 3.8e-39 166.4 126 69.8
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-38 163.3 147 53.7
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 4.6e-37 159.5 99 78.8
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 2.0e-32 144.1 199 45.7
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 1.6e-29 134.4 107 65.4
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 3.9e-28 129.8 96 71.9
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 1.5e-24 117.9 73 76.7
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 7.1e-22 109.0 80 71.2
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 3.5e-21 106.7 200 39.5
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 4.6e-21 106.3 73 69.9
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 1.3e-20 104.8 78 64.1
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 1.1e-19 101.7 85 61.2
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 1.5e-19 101.3 61 80.3
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 2.1e-18 97.4 66 71.2
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 3.8e-15 86.7 74 58.1
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 3.9e-12 76.6 55 69.1
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 1.1e-09 68.6 51 60.8
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 2.4e-09 67.4 52 61.5
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 2.6e-08 63.9 162 31.5
SMO115G0326 Selaginella moellendorffii HOM05D011895 ORTHO05D374257 3.4e-08 63.5 164 29.9
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 1.4e-06 58.2 54 55.6


User provided reference genes

Program Settings