Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 4.1e-195 684.5 331 100.0
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 2.4e-123 446.0 285 78.2
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 9.3e-123 444.1 333 70.6
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 1.1e-120 437.2 287 75.3
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 2.0e-117 426.4 304 71.7
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 7.6e-117 424.5 316 66.8
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 1.9e-115 419.9 286 71.0
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 2.1e-114 416.4 286 70.3
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 1.0e-113 414.1 285 70.2
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 5.1e-113 411.8 287 71.1
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 1.1e-112 410.6 286 70.3
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 9.6e-112 407.5 286 71.3
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 1.1e-110 404.1 291 69.1
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 5.3e-110 401.7 288 69.8
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 6.9e-110 401.4 286 69.2
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 6.9e-110 401.4 286 70.6
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 1.5e-109 400.2 286 69.9
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 1.7e-108 396.7 310 64.8
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 2.9e-108 396.0 327 60.9
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 3.8e-108 395.6 291 68.7
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 4.9e-108 395.2 286 65.7
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 8.4e-108 394.4 327 60.6
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 7.1e-107 391.3 288 69.1
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 7.1e-107 391.3 284 68.0
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 4.6e-106 388.7 290 69.0
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 1.3e-105 387.1 288 64.9
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 1.8e-105 386.7 287 65.9
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 1.8e-105 386.7 290 65.2
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 2.3e-105 386.3 288 69.4
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 3.0e-105 386.0 287 65.9
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 3.9e-105 385.6 287 66.6
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 1.5e-104 383.6 286 66.1
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 2.5e-104 382.9 287 64.5
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 4.3e-104 382.1 287 65.5
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 4.3e-104 382.1 288 64.6
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 7.4e-104 381.3 288 63.9
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 2.8e-103 379.4 288 66.0
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 3.7e-103 379.0 295 64.7
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 3.7e-103 379.0 254 74.4
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 3.7e-103 379.0 287 64.5
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 1.8e-102 376.7 287 64.8
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 1.4e-99 367.1 287 61.3
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 1.4e-99 367.1 287 61.3
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 7.2e-99 364.8 288 61.8
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 9.3e-99 364.4 287 60.6
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 2.1e-98 363.2 277 65.3
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 2.7e-98 362.8 286 66.4
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 3.5e-98 362.5 285 63.5
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 3.9e-97 359.0 287 63.8
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 5.1e-97 358.6 288 61.1
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 1.1e-96 357.5 276 64.1
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.3e-96 355.9 289 62.6
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 4.3e-96 355.5 289 62.6
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 1.3e-95 354.0 290 63.1
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 1.6e-95 353.6 272 64.3
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 3.7e-95 352.4 288 62.2
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 3.7e-95 352.4 287 62.7
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 1.8e-94 350.1 287 59.6
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.1e-94 349.4 287 62.4
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 9.0e-94 347.8 271 65.3
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.2e-93 347.4 285 61.8
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 3.4e-93 345.9 282 61.0
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 3.4e-93 345.9 282 61.0
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 3.4e-93 345.9 288 59.4
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 5.0e-92 342.0 228 73.7
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 8.5e-92 341.3 285 59.6
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 1.1e-91 340.9 342 53.5
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 4.2e-91 339.0 270 62.2
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 9.4e-91 337.8 286 58.4
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 4.6e-90 335.5 285 59.3
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 1.4e-89 334.0 276 62.0
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 3.7e-87 325.9 285 57.9
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 1.4e-86 323.9 280 61.4
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 1.5e-85 320.5 279 58.8
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 5.9e-85 318.5 283 59.4
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 5.9e-85 318.5 285 56.5
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 1.7e-84 317.0 225 68.9
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 1.7e-84 317.0 286 54.2
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 1.1e-83 314.3 275 56.0
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 3.2e-83 312.8 275 56.4
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 5.5e-83 312.0 225 67.1
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 7.2e-83 311.6 275 56.4
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 7.2e-83 311.6 275 56.4
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 2.7e-82 309.7 253 61.7
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 6.1e-82 308.5 275 55.3
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 7.9e-82 308.1 286 55.6
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 1.0e-81 307.8 275 56.7
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 1.0e-81 307.8 243 68.7
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 1.0e-81 307.8 236 69.5
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 2.3e-81 306.6 275 56.7
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 3.9e-81 305.8 228 65.4
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 5.1e-81 305.4 280 54.3
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 1.5e-80 303.9 275 53.1
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 3.3e-80 302.8 274 54.7
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 3.7e-79 299.3 274 55.5
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 3.1e-78 296.2 263 57.4
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 3.1e-78 296.2 201 71.1
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 5.9e-77 292.0 266 55.6
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 1.3e-76 290.8 283 55.5
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 2.9e-76 289.7 287 54.0
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 6.5e-76 288.5 276 53.6
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 1.9e-75 287.0 252 55.6
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 1.9e-75 287.0 315 50.2
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 7.2e-75 285.0 279 52.0
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 8.8e-73 278.1 286 50.7
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 9.7e-72 274.6 280 54.3
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 2.2e-71 273.5 284 50.7
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 1.2e-69 267.7 281 52.7
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 3.8e-68 262.7 214 59.3
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 2.7e-66 256.5 281 50.5
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 4.7e-66 255.8 281 50.9
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 1.4e-62 244.2 297 42.8
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 1.4e-57 227.6 280 47.1
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 2.3e-57 226.9 187 58.8
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 9.8e-56 221.5 181 61.9
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 9.2e-54 214.9 284 41.5
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 1.0e-52 211.5 213 50.7
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 4.3e-51 206.1 282 44.3
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 9.5e-51 204.9 169 63.3
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 2.8e-50 203.4 303 38.3
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 1.8e-49 200.7 300 42.3
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 3.0e-49 199.9 283 42.4
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 2.0e-48 197.2 195 50.3
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 1.8e-46 190.7 179 52.5
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 4.1e-46 189.5 288 41.7
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 1.6e-45 187.6 117 69.2
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 7.3e-43 178.7 187 52.9
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 3.6e-42 176.4 173 56.6
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 5.8e-40 169.1 147 55.8
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 1.1e-38 164.9 228 44.7
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 6.6e-36 155.6 256 40.2
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 7.5e-32 142.1 106 64.2
Glyma.10G074300 Glycine max HOM05D005118 ORTHO05D006038 3.0e-28 130.2 118 54.2
TPR.G14778 Trifolium pratense HOM05D005118 ORTHO05D006038 1.1e-25 121.7 120 52.5
PRCOL_00003909 Prasinoderma coloniale HOM05D005118 ORTHO05D006038 1.4e-25 121.3 197 39.6
CDE02G4411 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 2.3e-25 120.6 117 56.4
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 4.9e-23 112.8 163 38.0
AUR62015050 Chenopodium quinoa HOM05D005118 ORTHO05D006038 2.1e-18 97.4 286 28.3
SEGI_32763 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 1.4e-14 84.7 82 50.0
Carub.0003s1079 Capsella rubella HOM05D005118 ORTHO05D006038 3.2e-14 83.6 102 47.1
CARHR086010 Cardamine hirsuta HOM05D005118 ORTHO05D006038 9.3e-14 82.0 110 42.7
Ah.16g107780 Amaranthus hybridus HOM05D005118 ORTHO05D006038 2.1e-13 80.9 63 60.3
BcaB06g25617 Brassica carinata HOM05D005118 ORTHO05D006038 2.1e-13 80.9 61 63.9
BcaB06g25618 Brassica carinata HOM05D005118 ORTHO05D006038 2.1e-13 80.9 61 63.9
MCO02G431 Micromonas commoda HOM05D005118 ORTHO05D006038 3.5e-13 80.1 248 24.6
Hund15021 Selenicereus undatus HOM05D005118 ORTHO05D006038 1.5e-11 74.7 58 56.9
CBR_g30340 Chara braunii HOM05D005118 ORTHO05D006038 1.4e-09 68.2 194 26.3
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 2.4e-09 67.4 194 27.8
Cre01.g018500 Chlamydomonas reinhardtii HOM05D005118 ORTHO05D006038 5.3e-09 66.2 154 31.8
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 5.3e-09 66.2 177 28.8
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 9.0e-09 65.5 161 27.3
Lj2E139T0 Lonicera japonica HOM05D005118 ORTHO05D006038 4.5e-08 63.2 33 81.8
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 5.8e-08 62.8 162 27.8
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 9.9e-08 62.0 164 28.7
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 2.2e-07 60.8 161 28.6
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 4.9e-07 59.7 178 25.8
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 4.9e-07 59.7 165 27.9
Os11g0136500 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 4.9e-07 59.7 157 24.8
DCAR_018980 Daucus carota HOM05D007318 ORTHO05D009289 6.4e-07 59.3 159 25.2
FAN22G2138 Fragaria x ananassa HOM05D005118 ORTHO05D006038 6.4e-07 59.3 59 55.9
Gorai.005G019900 Gossypium raimondii HOM05D007318 ORTHO05D009289 6.4e-07 59.3 162 27.2
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 6.4e-07 59.3 162 29.0
Haze_02511 Corylus avellana HOM05D007318 ORTHO05D009289 8.4e-07 58.9 181 26.0
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 8.4e-07 58.9 162 27.2
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 8.4e-07 58.9 162 29.0
CsaV3_5G035390 Cucumis sativus L. HOM05D007318 ORTHO05D009289 1.4e-06 58.2 178 25.8
Os12g0133400 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 1.4e-06 58.2 157 23.6
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 3.2e-06 57.0 246 25.2
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 5.4e-06 56.2 168 29.2
Actinidia18618 Actinidia chinensis HOM05D007318 ORTHO05D009289 7.1e-06 55.8 264 23.5
ATR1096G030 Amborella trichopoda HOM05D007318 ORTHO05D009289 7.1e-06 55.8 140 28.6
MELO3C012351.2 Cucumis melo HOM05D007318 ORTHO05D009289 7.1e-06 55.8 141 27.7
Zm00001eb196200 Zea mays HOM05D007318 ORTHO05D009289 7.1e-06 55.8 157 26.8
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 9.3e-06 55.5 161 26.1
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 9.3e-06 55.5 161 26.1
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 9.3e-06 55.5 161 26.1
MD02G1257000 Malus domestica HOM05D007318 ORTHO05D009289 9.3e-06 55.5 161 28.0
TWI63G0749 Tripterygium wilfordii HOM05D007318 ORTHO05D009289 9.3e-06 55.5 160 29.4


User provided reference genes

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