Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000809 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 5.0e-224 780.8 397 100.0
CSS0049781 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 2.5e-223 778.5 397 99.7
Actinidia31470 Actinidia chinensis HOM05D006624 ORTHO05D008209 4.2e-170 601.7 395 74.9
Actinidia10881 Actinidia chinensis HOM05D006624 ORTHO05D008209 1.3e-168 596.7 397 75.6
Rhsim07G0122500 Rhododendron simsii HOM05D006624 ORTHO05D008209 4.5e-164 581.6 395 75.4
Dinv25186 Davidia involucrata HOM05D006624 ORTHO05D008209 9.3e-162 573.9 395 72.9
vmacro14109 Vaccinium macrocarpon HOM05D006624 ORTHO05D008209 1.5e-156 556.6 472 61.4
TAR629G2579 Trochodendron aralioides HOM05D006624 ORTHO05D008209 5.5e-138 495.0 382 65.2
GSVIVG01013232001 Vitis vinifera HOM05D006624 ORTHO05D008209 8.8e-136 487.6 395 61.5
CiPaw.11G087800 Carya illinoinensis HOM05D006624 ORTHO05D008209 8.2e-134 481.1 393 63.1
Sabra01G0115200 Salix brachista HOM05D006624 ORTHO05D008209 2.7e-129 466.1 394 57.9
Gorai.003G180000 Gossypium raimondii HOM05D006624 ORTHO05D008209 8.0e-129 464.5 394 59.6
QL12p007008 Quercus lobata HOM05D006624 ORTHO05D008209 2.0e-127 459.9 351 64.4
Potri.001G146500 Populus trichocarpa HOM05D006624 ORTHO05D008209 4.4e-127 458.8 389 57.8
Duzib068G0530 Durio zibethinus HOM05D006624 ORTHO05D008209 1.7e-126 456.8 355 62.8
Nitab4.5_0004327g0020 Nicotiana tabacum HOM05D006624 ORTHO05D008209 1.7e-126 456.8 363 61.2
Nitab4.5_0002055g0180 Nicotiana tabacum HOM05D006624 ORTHO05D008209 2.8e-126 456.1 398 57.0
Gohir.A03G002600 Gossypium hirsutum HOM05D006624 ORTHO05D008209 6.3e-126 454.9 405 58.0
TWI15G0738 Tripterygium wilfordii HOM05D006624 ORTHO05D008209 3.1e-125 452.6 396 57.8
Ciclev10031769m.g Citrus clementina HOM05D006624 ORTHO05D008209 9.1e-125 451.1 354 61.9
Cc08_g02070 Coffea canephora HOM05D006624 ORTHO05D008209 2.0e-124 449.9 397 57.9
Manes.17G019300 Manihot esculenta HOM05D006624 ORTHO05D008209 2.6e-124 449.5 390 58.2
COL.COLO4_17108 Corchorus olitorius HOM05D000087 ORTHO05D008209 5.9e-124 448.4 395 59.0
Haze_08295 Corylus avellana HOM05D006624 ORTHO05D008209 7.2e-122 441.4 367 64.0
PGSC0003DMG400024215 Solanum tuberosum HOM05D006624 ORTHO05D008209 1.6e-121 440.3 360 59.2
Solyc08g077250.4 Solanum lycopersicum HOM05D006624 ORTHO05D008209 6.1e-121 438.3 394 56.9
Sopen08g025830 Solanum pennellii HOM05D006624 ORTHO05D008209 4.0e-120 435.6 393 55.5
MD06G1040000 Malus domestica HOM05D006624 ORTHO05D008209 6.8e-120 434.9 391 56.5
HanXRQChr08g0227961 Helianthus annuus HOM05D006624 ORTHO05D008209 1.5e-119 433.7 396 56.1
Aqoxy7G00644 Aquilegia oxysepala HOM05D006624 ORTHO05D008209 3.4e-119 432.6 355 58.3
QL12p007057 Quercus lobata HOM05D006624 ORTHO05D008209 1.6e-116 423.7 357 61.3
Thecc.03G233800 Theobroma cacao HOM05D006624 ORTHO05D008209 2.0e-116 423.3 389 57.3
CAN.G799.14 Capsicum annuum HOM05D006624 ORTHO05D008209 2.7e-116 422.9 392 55.6
Prupe.5G046100 Prunus persica HOM05D006624 ORTHO05D008209 3.5e-116 422.5 373 56.8
Atru.chr6.1770 Acer truncatum HOM05D006624 ORTHO05D008209 2.1e-113 413.3 393 56.5
MSTRG.12153 Avicennia marina HOM05D006624 ORTHO05D008209 1.8e-112 410.2 373 57.4
RcHm_v2.0_Chr7g0208351 Rosa chinensis HOM05D006624 ORTHO05D008209 2.3e-112 409.8 393 57.0
Sc01g0007740 Simmondsia chinensis HOM05D006624 ORTHO05D008209 2.3e-112 409.8 330 58.8
Migut.N01377 Erythranthe guttata HOM05D006624 ORTHO05D008209 6.8e-112 408.3 338 58.0
Psat2g174640 Pisum sativum HOM05D006624 ORTHO05D008209 8.8e-112 407.9 341 59.5
Eucgr.E00310 Eucalyptus grandis HOM05D006624 ORTHO05D008209 9.8e-111 404.4 375 54.7
ECA233G2124 Erigeron canadensis HOM05D006624 ORTHO05D008209 1.7e-110 403.7 382 55.0
PGR042G3682 Punica granatum HOM05D006624 ORTHO05D008209 2.8e-110 402.9 375 55.7
ClCG09G012360 Citrullus lanatus HOM05D006624 ORTHO05D008209 1.4e-109 400.6 383 52.5
CsaV3_3G049520 Cucumis sativus L. HOM05D006624 ORTHO05D008209 5.4e-109 398.7 374 55.1
Gohir.D03G169701 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.6e-108 397.1 298 63.4
Glyma.11G041200 Glycine max HOM05D006624 ORTHO05D008209 2.7e-108 396.4 337 58.5
Lj2g0021367 Lotus japonicus HOM05D006624 ORTHO05D008209 7.7e-108 394.8 344 56.1
Sed0020690 Sechium edule HOM05D006624 ORTHO05D008209 1.3e-107 394.0 386 51.0
TPR.G21431 Trifolium pratense HOM05D006624 ORTHO05D008209 1.3e-107 394.0 333 58.9
Hund14427 Selenicereus undatus HOM05D006624 ORTHO05D008209 2.3e-107 393.3 370 54.3
Medtr5g014010 Medicago truncatula HOM05D006624 ORTHO05D008209 3.8e-107 392.5 345 55.7
Phvul.002G004700 Phaseolus vulgaris HOM05D006624 ORTHO05D008209 1.5e-106 390.6 340 55.9
FvH4_5g21210 Fragaria vesca HOM05D006624 ORTHO05D008209 3.3e-106 389.4 360 54.4
PSO565G0001 Papaver somniferum HOM05D006624 ORTHO05D008209 9.5e-106 387.9 382 55.8
Glyma.01G200900 Glycine max HOM05D006624 ORTHO05D008209 1.2e-105 387.5 336 58.0
Lsat_1_v5_gn_6_68241 Lactuca sativa HOM05D006624 ORTHO05D008209 2.1e-105 386.7 375 54.1
PSO339G2002 Papaver somniferum HOM05D006624 ORTHO05D008209 2.8e-105 386.3 382 55.2
THA.LOC104827742 Tarenaya hassleriana HOM05D006624 ORTHO05D008209 1.4e-104 384.0 372 51.1
VMungo1215G2954 Vigna mungo HOM05D006624 ORTHO05D008209 1.8e-104 383.6 340 55.6
FAN04G0639 Fragaria x ananassa HOM05D006624 ORTHO05D008209 4.0e-104 382.5 393 51.7
DCAR_031785 Daucus carota HOM05D006624 ORTHO05D008209 6.8e-104 381.7 398 52.3
FAN08G0242 Fragaria x ananassa HOM05D006624 ORTHO05D008209 6.8e-104 381.7 367 53.4
SGA_v2.0_scaffold36G14316 Striga asiatica HOM05D006624 ORTHO05D008209 3.7e-102 375.9 358 53.9
BcaC06g31468 Brassica carinata HOM05D006624 ORTHO05D008209 4.1e-101 372.5 370 50.3
Ah.07g200030 Amaranthus hybridus HOM05D006624 ORTHO05D008209 1.2e-100 370.9 366 52.2
Lalb_Chr16g0379211 Lupinus albus HOM05D006624 ORTHO05D008209 2.7e-100 369.8 340 53.5
AUR62018767 Chenopodium quinoa HOM05D006624 ORTHO05D008209 5.9e-100 368.6 358 52.8
BcaC06g34373 Brassica carinata HOM05D006624 ORTHO05D008209 5.0e-99 365.5 370 49.7
EL10Ac5g12192 Beta vulgaris HOM05D006624 ORTHO05D008209 6.6e-99 365.2 355 53.2
AUR62007233 Chenopodium quinoa HOM05D006624 ORTHO05D008209 8.6e-99 364.8 385 49.4
C07p29750 Brassica napus HOM05D006624 ORTHO05D008209 5.6e-98 362.1 370 49.2
arahy.Tifrunner.gnm1.ann1.A7V6P3 Arachis hypogaea HOM05D006624 ORTHO05D008209 1.6e-97 360.5 365 51.0
AL8G11790 Arabidopsis lyrata HOM05D006624 ORTHO05D008209 4.7e-97 359.0 386 49.0
Aa31LG9G6360 Aethionema arabicum HOM05D006624 ORTHO05D008209 1.0e-96 357.8 382 49.2
arahy.Tifrunner.gnm1.ann1.76B0S0 Arachis hypogaea HOM05D006624 ORTHO05D008209 1.4e-96 357.5 372 50.0
A06p45890 Brassica napus HOM05D006624 ORTHO05D008209 1.4e-96 357.5 370 48.9
BraA06t27456Z Brassica rapa HOM05D006624 ORTHO05D008209 1.4e-96 357.5 370 48.6
BolC7t43526H Brassica oleracea HOM05D006624 ORTHO05D008209 1.8e-96 357.1 370 48.6
MELO3C003374.2 Cucumis melo HOM05D006624 ORTHO05D008209 1.5e-95 354.0 405 47.9
FAN18G2886 Fragaria x ananassa HOM05D006624 ORTHO05D008209 5.4e-93 345.5 390 48.7
AT5G46560 Arabidopsis thaliana HOM05D006624 ORTHO05D008209 2.0e-92 343.6 348 50.0
Carub.0008s0136 Capsella rubella HOM05D006624 ORTHO05D008209 2.5e-90 336.7 354 49.2
ATR1101G009 Amborella trichopoda HOM05D006624 ORTHO05D008209 2.1e-89 333.6 327 50.5
SalBow6G4456 Salvia bowleyana HOM05D006624 ORTHO05D008209 5.2e-88 328.9 455 41.5
Lj2A246G27 Lonicera japonica HOM05D006624 ORTHO05D008209 1.5e-87 327.4 293 56.3
MBI04_g31972_MAGBIO Magnolia biondii HOM05D006624 ORTHO05D008209 4.4e-87 325.9 441 44.0
Zm00001eb000170 Zea mays HOM05D006624 ORTHO05D008209 1.4e-80 304.3 337 43.3
Cpa.g.sc6.412 Carica papaya HOM05D006624 ORTHO05D008209 2.3e-80 303.5 242 61.6
QL12p007029 Quercus lobata HOM05D006624 ORTHO05D008209 2.3e-80 303.5 248 60.5
CDE04G3153 Ceratophyllum demersum HOM05D006624 ORTHO05D008209 3.2e-77 293.1 335 44.8
Thhalv10000965m.g Eutrema salsugineum HOM05D006624 ORTHO05D008209 7.1e-77 292.0 326 46.3
Gorai.001G276000 Gossypium raimondii HOM05D006624 ORTHO05D008209 2.5e-66 256.9 280 50.4
Peaxi162Scf00084g00925 Petunia axillaris HOM05D006624 ORTHO05D008209 4.3e-66 256.1 217 58.5
Hma1.2p1_3049F.1_g332130 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 1.8e-64 250.8 299 48.5
SEGI_35168 Sequoiadendron giganteum HOM05D006624 ORTHO05D008209 1.1e-61 241.5 286 43.0
Gorai.004G193000 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.2e-60 238.0 248 52.0
Mapoly0037s0054 Marchantia polymorpha HOM05D006624 ORTHO05D008209 1.0e-59 235.0 312 39.4
Ca_24634_v3 Cicer arietinum L. HOM05D006624 ORTHO05D008209 3.9e-59 233.0 179 62.6
FAN13G3188 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.5e-58 231.1 202 58.9
Pp3c26_11390 Physcomitrium patens HOM05D006624 ORTHO05D008209 1.3e-57 228.0 365 39.2
Hma1.2p1_0414F.1_g147760 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 2.9e-54 216.9 163 66.9
CARHR175020 Cardamine hirsuta HOM05D006624 ORTHO05D008209 2.4e-53 213.8 250 45.2
Hma1.2p1_3049F.1_g332131 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 2.5e-45 187.2 130 72.3
Gorai.013G102100 Gossypium raimondii HOM05D006624 ORTHO05D008209 9.3e-45 185.3 344 36.3
SpUn0632_0010 Schrenkiella parvula HOM05D006624 ORTHO05D008209 6.0e-44 182.6 231 45.5
CBR_g18557 Chara braunii HOM05D006624 ORTHO05D008209 3.7e-33 146.7 249 34.9
Duzib084G0908 Durio zibethinus HOM05D006624 ORTHO05D008209 3.7e-33 146.7 132 54.5
Peaxi162Scf00084g00918 Petunia axillaris HOM05D006624 ORTHO05D008209 6.3e-33 146.0 140 57.1
Gorai.004G213700 Gossypium raimondii HOM05D006624 ORTHO05D008209 6.5e-30 136.0 254 35.0
arahy.Tifrunner.gnm1.ann1.PE2WYP Arachis hypogaea HOM05D006624 ORTHO05D008209 1.0e-27 128.6 183 41.0
AagrBONN_evm.TU.Sc2ySwM_362.2673 Anthoceros agrestis HOM05D006624 ORTHO05D008209 1.1e-26 125.2 198 33.8
Gorai.007G312600 Gossypium raimondii HOM05D000724 ORTHO05D011687 3.4e-23 113.6 284 31.3
Gorai.001G079600 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.8e-19 101.3 84 52.4
Gohir.D11G288800 Gossypium hirsutum HOM05D000724 ORTHO05D011687 5.1e-19 99.8 92 51.1
Os03g0100050 Oryza sativa ssp. japonica HOM05D006624 ORTHO05D008209 2.6e-18 97.4 99 46.5
Gohir.D08G202450 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.4e-16 91.7 76 53.9
Gohir.D07G137300 Gossypium hirsutum HOM05D006624 ORTHO05D008209 5.9e-15 86.3 70 54.3
Gohir.D11G288766 Gossypium hirsutum HOM05D006624 ORTHO05D008209 2.6e-10 70.9 98 46.9
arahy.Tifrunner.gnm1.ann1.HID3FF Arachis hypogaea HOM05D006624 ORTHO05D008209 9.7e-10 68.9 109 41.3
Gohir.D07G075451 Gossypium hirsutum HOM05D006624 ORTHO05D008209 9.7e-10 68.9 98 45.9
Gohir.D07G137350 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.3e-09 68.6 98 45.9
Gohir.D08G202425 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.7e-09 68.2 98 45.9
CBR_g30426 Chara braunii HOM05D006624 ORTHO05D008209 3.5e-07 60.5 51 56.9


User provided reference genes

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