Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.4e-102 376.3 199 100.0
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 7.9e-85 317.4 199 86.9
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 7.4e-83 310.8 199 80.4
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 3.7e-82 308.5 184 90.2
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 1.1e-81 307.0 184 84.2
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 7.9e-77 290.8 199 74.9
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 1.3e-76 290.0 198 73.2
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 1.5e-75 286.6 199 73.9
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 6.3e-74 281.2 200 71.5
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 1.8e-73 279.6 199 72.4
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 9.0e-73 277.3 199 69.3
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 1.5e-72 276.6 199 70.4
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 1.5e-72 276.6 200 73.0
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 2.0e-72 276.2 184 78.8
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 4.5e-72 275.0 200 68.5
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 2.9e-71 272.3 200 71.5
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 3.8e-71 271.9 198 69.2
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 5.0e-71 271.6 200 68.0
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 5.0e-71 271.6 200 68.0
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 8.5e-71 270.8 199 69.3
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 1.1e-70 270.4 199 68.3
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 3.2e-70 268.9 201 69.2
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 5.5e-70 268.1 200 68.5
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 9.3e-70 267.3 200 68.5
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 1.6e-69 266.5 198 68.2
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.6e-69 266.5 200 68.0
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 3.6e-69 265.4 207 68.1
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 2.3e-68 262.7 198 70.7
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 3.9e-68 261.9 199 66.8
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 5.1e-68 261.5 199 66.8
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 1.1e-67 260.4 197 65.0
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.3e-66 256.9 198 64.1
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 1.6e-66 256.5 200 67.0
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 2.2e-66 256.1 197 62.9
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 3.7e-66 255.4 198 64.1
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 3.7e-66 255.4 199 64.8
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 3.7e-66 255.4 200 67.0
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 6.3e-66 254.6 167 78.4
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 1.8e-65 253.1 205 62.4
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 4.1e-65 251.9 200 65.0
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 2.0e-64 249.6 205 62.0
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 1.3e-63 246.9 198 63.6
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.7e-63 246.5 184 69.0
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.7e-63 246.5 195 65.6
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 1.7e-63 246.5 199 62.3
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 5.0e-63 245.0 199 62.8
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 6.5e-63 244.6 199 61.3
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 2.5e-62 242.7 200 62.0
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 4.2e-62 241.9 199 63.8
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 7.2e-62 241.1 184 67.4
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 9.4e-62 240.7 199 62.3
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 1.2e-61 240.4 196 64.3
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 1.2e-61 240.4 197 62.9
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 2.7e-61 239.2 238 53.8
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 3.6e-61 238.8 200 61.5
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 2.3e-60 236.1 206 62.6
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 2.3e-60 236.1 185 64.9
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 3.0e-60 235.7 185 64.3
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 3.9e-60 235.3 155 75.5
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 6.7e-60 234.6 190 63.2
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 1.5e-59 233.4 184 65.8
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 4.4e-59 231.9 197 62.4
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 4.4e-59 231.9 197 59.9
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 7.4e-59 231.1 201 60.7
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 2.2e-58 229.6 197 58.9
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 3.7e-58 228.8 196 58.2
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 4.8e-58 228.4 197 59.4
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 6.3e-58 228.0 197 57.9
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 1.1e-57 227.3 197 58.4
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 1.4e-57 226.9 197 58.4
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 1.8e-57 226.5 197 58.4
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 2.4e-57 226.1 181 62.4
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 9.1e-57 224.2 197 57.9
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 1.2e-56 223.8 196 57.1
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 7.7e-56 221.1 184 61.4
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.3e-55 220.3 232 53.4
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 2.2e-55 219.5 197 57.4
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 3.8e-55 218.8 197 57.9
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 5.0e-55 218.4 199 58.8
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 3.2e-54 215.7 199 55.3
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 5.5e-54 214.9 199 58.3
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 9.4e-54 214.2 199 58.3
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 1.2e-53 213.8 200 56.0
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 3.6e-53 212.2 200 55.5
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 1.0e-52 210.7 184 58.7
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 1.5e-51 206.8 163 66.3
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 2.0e-51 206.5 151 74.8
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 1.3e-50 203.8 261 46.4
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 1.8e-49 199.9 184 53.3
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 5.3e-49 198.4 194 52.6
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 2.6e-48 196.1 144 69.4
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 3.5e-48 195.7 199 50.3
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 6.5e-47 191.4 146 69.2
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 2.5e-46 189.5 166 59.6
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 9.4e-46 187.6 204 49.0
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 4.8e-42 175.3 162 57.4
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 3.1e-41 172.6 186 52.7
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 3.1e-41 172.6 185 47.6
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 4.5e-40 168.7 145 60.0
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 1.9e-38 163.3 192 46.4
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 1.9e-38 163.3 137 61.3
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 8.8e-36 154.5 128 62.5
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 3.4e-35 152.5 119 67.2
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 6.3e-34 148.3 145 55.9
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 6.3e-34 148.3 115 61.7
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 1.8e-33 146.7 187 44.9
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 4.1e-33 145.6 156 47.4
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 1.6e-32 143.7 146 53.4
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 4.5e-32 142.1 84 84.5
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 2.1e-29 133.3 110 63.6
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 8.0e-29 131.3 89 74.2
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 1.2e-27 127.5 110 54.5
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.7e-26 123.6 184 36.4
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 7.0e-25 118.2 161 41.0
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 2.3e-23 113.2 129 48.8
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 1.9e-22 110.2 106 51.9
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 6.1e-21 105.1 163 39.9
CBR_g30123 Chara braunii HOM05D006640 ORTHO05D008078 1.5e-19 100.5 190 32.1
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 3.4e-19 99.4 84 60.7
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 2.7e-16 89.7 61 68.9
Aqoxy2G03351 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 4.0e-12 75.9 58 67.2
vmacro03672 Vaccinium macrocarpon HOM05D002991 ORTHO05D003480 1.5e-11 73.9 45 80.0
MD08G1245200 Malus domestica HOM05D006640 ORTHO05D008078 2.9e-10 69.7 38 86.8
CDE04G0756 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 5.4e-09 65.5 126 34.9
MCO04G502 Micromonas commoda HOM05D006640 ORTHO05D008078 7.0e-09 65.1 190 24.2
FvH4_6g22960 Fragaria vesca HOM05D006640 ORTHO05D008078 3.0e-07 59.7 55 56.4
Phvul.006G060400 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 3.0e-07 59.7 45 62.2


User provided reference genes

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