Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 1.8e-140 502.7 266 100.0
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 1.9e-118 429.5 270 84.1
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 3.6e-117 425.2 265 85.7
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 1.1e-110 403.7 274 78.8
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 1.4e-108 396.7 275 77.5
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 1.8e-108 396.4 273 76.2
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 4.0e-108 395.2 269 77.7
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 4.0e-108 395.2 269 77.3
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 2.8e-106 389.0 269 77.0
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 4.9e-106 388.3 274 74.8
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 8.3e-106 387.5 270 75.2
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 1.4e-105 386.7 271 76.4
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 2.4e-105 386.0 270 75.9
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 7.0e-105 384.4 269 77.7
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 9.2e-105 384.0 269 75.1
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 7.8e-104 380.9 270 74.8
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 1.0e-103 380.6 264 75.8
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 2.3e-103 379.4 270 75.2
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 2.9e-103 379.0 267 73.4
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 1.9e-102 376.3 271 72.7
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 3.3e-102 375.6 271 74.2
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 1.2e-101 373.6 268 73.1
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 2.1e-101 372.9 269 71.7
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 2.8e-101 372.5 264 73.5
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 4.7e-101 371.7 272 73.9
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 6.1e-101 371.3 270 73.7
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 8.0e-101 370.9 267 72.7
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 1.8e-100 369.8 261 75.9
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 2.3e-100 369.4 273 71.4
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 3.0e-100 369.0 273 71.8
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 3.0e-100 369.0 270 72.2
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 3.0e-100 369.0 260 73.8
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 4.0e-100 368.6 219 86.8
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 8.9e-100 367.5 273 71.4
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 8.9e-100 367.5 279 73.8
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 1.2e-99 367.1 267 70.8
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 1.5e-99 366.7 273 69.6
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 3.4e-99 365.5 269 70.3
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 3.4e-99 365.5 273 71.1
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 4.4e-99 365.2 273 71.1
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 4.4e-99 365.2 273 71.1
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 5.7e-99 364.8 269 70.3
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 2.2e-98 362.8 275 70.2
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 2.9e-98 362.5 273 70.3
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 3.7e-98 362.1 273 70.0
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 8.3e-98 360.9 271 70.5
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 1.4e-97 360.1 305 64.3
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 5.4e-97 358.2 267 69.7
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 7.0e-97 357.8 275 67.6
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 2.7e-96 355.9 271 69.7
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 3.5e-96 355.5 270 69.6
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.5e-96 355.5 286 65.7
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.5e-96 355.5 276 68.5
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 4.6e-96 355.1 268 71.3
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 1.0e-95 354.0 272 70.2
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.3e-95 353.6 276 68.1
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 1.7e-95 353.2 264 68.9
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 1.7e-95 353.2 269 68.0
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 5.0e-95 351.7 274 69.7
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.1e-94 350.5 276 67.4
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 1.5e-94 350.1 269 68.0
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 4.3e-94 348.6 271 68.3
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 4.3e-94 348.6 276 67.4
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 4.3e-94 348.6 270 67.8
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 5.6e-94 348.2 269 67.7
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 1.2e-93 347.1 267 67.8
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 1.2e-93 347.1 267 68.2
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 8.0e-93 344.4 272 68.0
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 8.0e-93 344.4 259 67.6
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 4.0e-92 342.0 274 68.2
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 5.2e-92 341.7 271 67.2
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 1.5e-91 340.1 272 67.3
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 2.0e-91 339.7 272 67.3
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 3.4e-91 339.0 270 65.9
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 3.4e-91 339.0 268 65.7
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 7.5e-91 337.8 272 66.5
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 1.3e-90 337.0 264 68.6
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 1.7e-90 336.7 338 57.4
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 1.9e-89 333.2 269 70.3
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 3.2e-89 332.4 272 66.5
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.4e-89 331.6 285 63.2
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 5.4e-89 331.6 269 67.3
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 1.7e-87 326.6 261 67.8
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 7.3e-86 321.2 271 65.7
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 7.3e-86 321.2 245 67.8
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 3.6e-85 318.9 246 68.7
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 4.9e-82 308.5 244 64.8
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 1.9e-81 306.6 269 63.6
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 3.9e-79 298.9 267 61.0
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 5.1e-71 271.9 258 59.3
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 6.6e-71 271.6 242 63.2
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 6.6e-71 271.6 274 53.6
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 5.6e-70 268.5 189 70.9
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 2.8e-69 266.2 287 54.0
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 6.2e-69 265.0 244 62.3
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 9.0e-68 261.2 181 70.7
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 1.4e-65 253.8 273 51.6
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 1.1e-62 244.2 269 51.7
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 1.6e-61 240.4 194 61.3
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 1.4e-60 237.3 150 77.3
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 1.4e-57 227.3 264 50.4
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 2.1e-53 213.4 262 46.6
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 2.8e-53 213.0 197 61.9
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 5.8e-51 205.3 264 43.6
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 6.4e-50 201.8 236 46.6
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 9.0e-44 181.4 132 72.0
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 1.1e-41 174.5 343 39.4
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.6e-37 160.6 115 74.8
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.2e-37 160.2 115 73.9
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 3.7e-37 159.5 145 62.8
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 2.4e-36 156.8 108 73.1
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 5.1e-31 139.0 127 57.5
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 3.3e-30 136.3 140 55.7
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 1.3e-29 134.4 109 67.0
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 2.2e-29 133.7 112 69.6
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 6.3e-29 132.1 112 65.2
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 8.2e-29 131.7 160 53.1
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 5.3e-28 129.0 84 73.8
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 6.9e-28 128.6 84 71.4
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 2.0e-27 127.1 111 63.1
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 8.5e-26 121.7 264 33.0
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 1.8e-23 114.0 248 31.0
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 2.3e-23 113.6 104 58.7
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 3.3e-22 109.8 67 73.1
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.4e-20 103.6 56 83.9
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 9.1e-20 101.7 74 74.3
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 5.9e-19 99.0 56 89.3
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 1.0e-18 98.2 124 48.4
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 1.1e-17 94.7 69 63.8
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 2.5e-17 93.6 74 73.0
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 1.6e-16 90.9 103 52.4
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 1.0e-15 88.2 80 65.0
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 1.6e-08 64.3 98 38.8
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 8.0e-08 62.0 82 48.8
Aa31sc27G90 Aethionema arabicum HOM05D005802 ORTHO05D006992 1.8e-07 60.8 141 34.8
arahy.Tifrunner.gnm1.ann1.LXE9FZ Arachis hypogaea HOM05D005802 ORTHO05D006992 7.5e-06 55.5 34 67.6
FAN06G0568 Fragaria x ananassa HOM05D005802 ORTHO05D006992 9.7e-06 55.1 53 52.8


User provided reference genes

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