Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 4.6e-162 574.7 272 100.0
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 6.4e-156 554.3 272 96.3
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 1.7e-145 519.6 272 89.0
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 3.8e-140 501.9 262 88.2
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.2e-139 498.8 264 87.5
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.2e-138 496.9 264 87.5
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 7.8e-138 494.2 272 83.8
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 1.7e-137 493.0 271 84.9
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 8.7e-137 490.7 272 83.8
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 8.7e-137 490.7 265 86.8
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 1.1e-136 490.3 272 83.8
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 1.1e-136 490.3 265 87.2
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 1.5e-136 490.0 265 87.5
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 2.5e-136 489.2 265 87.5
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 4.3e-136 488.4 265 86.4
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 5.6e-136 488.0 265 86.4
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 1.6e-135 486.5 273 83.9
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 1.1e-134 483.8 266 84.6
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 1.4e-134 483.4 273 82.1
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 3.1e-134 482.3 294 78.2
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 4.0e-134 481.9 273 82.4
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 1.2e-133 480.3 265 84.5
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 1.5e-133 479.9 272 82.4
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 1.5e-133 479.9 266 85.0
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 1.5e-133 479.9 265 84.9
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 2.6e-133 479.2 265 83.0
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 4.5e-133 478.4 263 82.9
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 5.8e-133 478.0 273 82.4
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 7.6e-133 477.6 265 83.8
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 7.6e-133 477.6 266 82.7
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 7.6e-133 477.6 266 83.8
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 7.6e-133 477.6 261 83.5
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 1.3e-132 476.9 268 82.8
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 1.3e-132 476.9 269 82.5
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 2.2e-132 476.1 265 84.2
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 2.2e-132 476.1 275 80.7
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 2.2e-132 476.1 266 83.1
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 3.8e-132 475.3 264 83.7
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 6.4e-132 474.6 268 81.0
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 6.4e-132 474.6 270 81.9
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 8.4e-132 474.2 264 83.7
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 1.1e-131 473.8 261 82.0
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 1.9e-131 473.0 271 81.5
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 1.9e-131 473.0 273 80.6
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 2.4e-131 472.6 260 85.8
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 2.4e-131 472.6 263 84.8
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 3.2e-131 472.2 266 82.7
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 4.2e-131 471.9 271 81.5
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 5.4e-131 471.5 265 82.6
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 7.1e-131 471.1 263 82.5
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 7.1e-131 471.1 266 82.7
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.2e-130 470.3 265 81.9
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.2e-130 470.3 265 81.9
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 1.6e-130 469.9 261 82.0
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 2.7e-130 469.2 271 79.7
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.7e-130 469.2 265 81.5
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 3.5e-130 468.8 266 82.0
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 4.6e-130 468.4 266 81.6
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 6.0e-130 468.0 265 81.1
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 6.0e-130 468.0 265 80.4
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 6.0e-130 468.0 271 80.4
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 7.9e-130 467.6 265 81.1
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 7.9e-130 467.6 270 81.1
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 7.9e-130 467.6 270 81.5
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 1.0e-129 467.2 268 80.6
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 1.0e-129 467.2 266 81.2
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 1.0e-129 467.2 263 82.5
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 1.8e-129 466.5 266 81.6
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 1.8e-129 466.5 271 80.1
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 3.0e-129 465.7 266 81.2
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 3.0e-129 465.7 265 81.1
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 3.0e-129 465.7 263 82.5
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 6.7e-129 464.5 262 80.9
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 6.7e-129 464.5 271 79.0
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 6.7e-129 464.5 263 81.7
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 1.9e-128 463.0 257 82.9
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.9e-128 463.0 271 79.7
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 2.5e-128 462.6 271 79.3
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 3.3e-128 462.2 266 80.1
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 4.3e-128 461.8 271 78.6
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 4.3e-128 461.8 271 78.6
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 4.3e-128 461.8 271 78.6
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 4.3e-128 461.8 271 78.6
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 5.6e-128 461.5 271 78.6
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 5.6e-128 461.5 270 80.4
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 7.4e-128 461.1 265 80.0
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 1.3e-127 460.3 259 81.9
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 1.6e-127 459.9 258 82.2
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 1.6e-127 459.9 266 80.1
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 2.8e-127 459.1 273 78.8
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 2.8e-127 459.1 271 78.2
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 2.8e-127 459.1 271 78.2
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 2.8e-127 459.1 260 81.2
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 2.8e-127 459.1 267 80.5
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 8.1e-127 457.6 267 80.5
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 8.1e-127 457.6 257 82.9
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 1.1e-126 457.2 271 78.6
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 1.4e-126 456.8 242 88.0
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 2.4e-126 456.1 273 80.2
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 3.1e-126 455.7 271 77.9
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 4.0e-126 455.3 267 80.1
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 4.0e-126 455.3 267 80.1
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 5.3e-126 454.9 242 86.8
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 2.6e-125 452.6 271 77.5
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 3.4e-125 452.2 267 78.3
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 9.9e-125 450.7 266 78.9
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 9.9e-125 450.7 266 78.9
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 1.7e-124 449.9 273 77.3
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 2.9e-124 449.1 267 79.0
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 2.9e-124 449.1 264 78.4
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 7.1e-123 444.5 273 76.2
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 6.0e-122 441.4 265 78.5
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 2.3e-121 439.5 264 79.2
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 2.3e-121 439.5 264 79.2
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 2.5e-120 436.0 233 86.7
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 2.5e-120 436.0 271 76.8
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 1.8e-118 429.9 227 86.8
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 1.2e-117 427.2 263 76.8
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 2.6e-117 426.0 266 72.6
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 4.6e-114 415.2 221 87.3
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 7.9e-114 414.5 216 87.0
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 1.1e-112 410.6 242 82.2
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 1.9e-112 409.8 270 71.9
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 2.2e-111 406.4 221 84.6
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 6.3e-111 404.8 216 85.6
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 8.2e-111 404.4 268 71.6
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 4.1e-110 402.1 213 87.3
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.4e-107 393.7 266 69.9
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 5.5e-107 391.7 208 87.5
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.0e-105 387.5 270 68.1
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 3.9e-105 385.6 283 66.8
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 2.5e-99 366.3 236 74.2
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 6.1e-98 361.7 267 63.3
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 8.8e-97 357.8 218 74.8
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 7.2e-91 338.2 272 59.9
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 8.8e-81 304.7 269 56.5
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.8e-78 297.0 178 79.2
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 4.1e-78 295.8 162 83.3
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 1.6e-74 283.9 151 86.8
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 6.3e-71 271.9 218 63.8
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 8.3e-71 271.6 184 69.6
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 1.0e-68 264.6 149 80.5
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 3.3e-67 259.6 148 81.1
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 4.2e-67 259.2 148 79.7
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 4.4e-64 249.2 149 77.9
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 2.0e-56 223.8 126 79.4
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 7.3e-51 205.3 147 66.0
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 1.7e-39 167.5 139 61.2
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 3.0e-20 103.6 84 63.1
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 1.6e-13 81.3 48 79.2
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 2.7e-13 80.5 49 71.4
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 3.9e-12 76.6 52 69.2
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 1.9e-11 74.3 53 66.0


User provided reference genes

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