Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 4.1e-54 214.5 114 100.0
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 7.3e-51 203.8 114 94.7
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 3.4e-48 194.9 114 90.4
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 1.7e-47 192.6 114 86.8
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 1.7e-47 192.6 114 86.8
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 2.9e-47 191.8 112 90.2
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 3.7e-47 191.4 114 86.8
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.1e-46 189.9 114 87.7
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 1.1e-46 189.9 114 86.0
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 1.1e-46 189.9 112 89.3
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 1.4e-46 189.5 112 87.5
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 2.4e-46 188.7 112 90.2
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 3.2e-46 188.3 114 86.8
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 4.1e-46 188.0 114 88.6
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 5.4e-46 187.6 114 86.0
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 7.0e-46 187.2 114 85.1
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 2.0e-45 185.7 110 87.3
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 2.0e-45 185.7 114 84.2
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 2.7e-45 185.3 112 83.9
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 6.0e-45 184.1 114 85.1
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 7.8e-45 183.7 114 84.2
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 7.8e-45 183.7 112 83.0
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 1.0e-44 183.3 114 84.2
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 1.3e-44 183.0 114 84.2
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 1.7e-44 182.6 115 86.1
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 2.3e-44 182.2 114 83.3
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 3.0e-44 181.8 114 80.7
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 3.0e-44 181.8 112 83.0
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 3.9e-44 181.4 114 85.1
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 3.9e-44 181.4 115 84.3
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 3.9e-44 181.4 115 84.3
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 3.9e-44 181.4 115 84.3
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 3.9e-44 181.4 115 84.3
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 3.9e-44 181.4 114 81.6
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 5.0e-44 181.0 112 81.2
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 5.0e-44 181.0 112 82.1
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 5.0e-44 181.0 114 83.3
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 5.0e-44 181.0 114 83.3
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 5.0e-44 181.0 114 81.6
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 5.0e-44 181.0 114 86.0
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 8.6e-44 180.3 110 85.5
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 8.6e-44 180.3 112 82.1
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 1.5e-43 179.5 111 81.1
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 1.5e-43 179.5 114 82.5
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 1.9e-43 179.1 114 78.9
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 1.9e-43 179.1 115 84.3
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 1.9e-43 179.1 112 82.1
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 2.5e-43 178.7 115 83.5
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 3.3e-43 178.3 115 82.6
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 5.6e-43 177.6 104 91.3
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 7.3e-43 177.2 112 79.5
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 7.3e-43 177.2 114 78.9
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 7.3e-43 177.2 115 82.6
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 7.3e-43 177.2 112 82.1
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 9.5e-43 176.8 112 79.5
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 9.5e-43 176.8 114 81.6
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 1.2e-42 176.4 114 82.5
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 1.6e-42 176.0 115 81.7
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 2.1e-42 175.6 115 79.1
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 2.1e-42 175.6 114 78.1
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 2.8e-42 175.3 114 78.1
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 4.7e-42 174.5 114 79.8
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 6.2e-42 174.1 114 78.9
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 6.2e-42 174.1 112 82.1
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 6.2e-42 174.1 114 77.2
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 8.1e-42 173.7 114 78.1
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 8.1e-42 173.7 114 78.1
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 8.1e-42 173.7 106 84.0
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 1.1e-41 173.3 114 78.1
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 1.1e-41 173.3 142 70.4
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.4e-41 172.9 114 78.9
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.4e-41 172.9 114 78.9
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.8e-41 172.6 112 80.4
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 1.8e-41 172.6 114 76.3
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 1.8e-41 172.6 113 79.6
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 2.3e-41 172.2 114 78.1
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 3.1e-41 171.8 112 78.6
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 3.1e-41 171.8 114 78.9
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 4.0e-41 171.4 114 77.2
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 5.2e-41 171.0 114 80.7
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 5.2e-41 171.0 114 80.7
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 5.2e-41 171.0 114 80.7
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 5.2e-41 171.0 113 80.5
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 6.8e-41 170.6 113 79.6
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 6.8e-41 170.6 108 80.6
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 6.8e-41 170.6 111 78.4
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 8.9e-41 170.2 114 77.2
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 1.2e-40 169.9 114 80.7
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 2.6e-40 168.7 111 79.3
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 4.4e-40 167.9 111 79.3
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 5.8e-40 167.5 105 81.9
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 7.5e-40 167.2 115 78.3
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 2.2e-39 165.6 112 74.1
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 2.2e-39 165.6 112 77.7
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 2.2e-39 165.6 114 75.4
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 2.9e-39 165.2 114 75.4
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 2.9e-39 165.2 114 75.4
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 2.9e-39 165.2 114 75.4
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 2.9e-39 165.2 146 66.4
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 3.7e-39 164.9 114 75.4
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 6.4e-39 164.1 114 75.4
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 6.4e-39 164.1 114 74.6
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 1.1e-38 163.3 115 76.5
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 1.4e-38 162.9 114 75.4
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 4.6e-37 157.9 104 78.8
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 1.3e-36 156.4 114 72.8
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 1.7e-36 156.0 114 73.7
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 2.3e-36 155.6 145 60.0
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 8.6e-36 153.7 114 71.9
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 8.6e-36 153.7 112 72.3
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 8.1e-34 147.1 94 80.9
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 6.8e-33 144.1 84 88.1
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 8.9e-33 143.7 80 91.2
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 3.4e-32 141.7 92 82.6
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 3.4e-32 141.7 100 74.0
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 4.4e-32 141.4 111 67.6
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 5.8e-32 141.0 80 90.0
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 1.3e-31 139.8 79 89.9
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 1.4e-30 136.3 115 67.0
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 3.2e-30 135.2 77 90.9
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 9.2e-30 133.7 111 64.0
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 1.6e-29 132.9 106 65.1
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 4.6e-29 131.3 75 89.3
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 1.7e-28 129.4 83 79.5
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 1.7e-28 129.4 83 79.5
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.2e-26 123.2 72 86.1
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 8.1e-26 120.6 103 62.1
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 1.2e-24 116.7 65 90.8
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 3.4e-24 115.2 69 84.1
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 8.4e-23 110.5 77 71.4
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 1.9e-22 109.4 114 56.1
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 3.2e-22 108.6 77 71.4
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 1.6e-21 106.3 77 70.1
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 3.0e-20 102.1 102 57.8
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 6.6e-20 100.9 102 50.0
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 3.3e-19 98.6 65 78.5
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 5.6e-19 97.8 102 53.9
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 7.3e-19 97.4 100 58.0
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.6e-18 96.3 63 76.2
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 3.1e-17 92.0 109 45.0
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 3.4e-16 88.6 57 82.5
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 2.4e-14 82.4 95 52.6
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 3.2e-14 82.0 55 81.8
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 3.2e-14 82.0 76 52.6
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 5.4e-14 81.3 51 84.3
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.6e-13 79.7 104 46.2
arahy.Tifrunner.gnm1.ann1.3LH6CZ Arachis hypogaea HOM05D004600 ORTHO05D021519 2.1e-13 79.3 91 52.7
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 2.1e-13 79.3 43 90.7
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 4.6e-13 78.2 106 44.3
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 4.6e-13 78.2 45 86.7
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 1.0e-12 77.0 50 80.0
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 1.3e-12 76.6 60 66.7
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 1.8e-12 76.3 43 86.0
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 3.9e-12 75.1 43 86.0
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 8.7e-12 73.9 44 77.3
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 8.7e-12 73.9 95 52.6
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 1.1e-11 73.6 51 76.5
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 1.5e-11 73.2 108 43.5
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 3.3e-11 72.0 99 48.5
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 2.8e-10 68.9 95 42.1
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 4.8e-10 68.2 97 47.4
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 2.9e-07 58.9 59 45.8


User provided reference genes

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