Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 2.2e-48 195.3 96 100.0
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 1.0e-21 106.7 52 90.4
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 1.0e-21 106.7 73 67.1
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 1.3e-21 106.3 51 92.2
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 1.3e-21 106.3 51 92.2
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 1.3e-21 106.3 51 92.2
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 3.0e-21 105.1 51 92.2
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 3.0e-21 105.1 52 88.5
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 3.0e-21 105.1 76 64.5
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 3.9e-21 104.8 51 90.2
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 5.1e-21 104.4 52 88.5
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 5.1e-21 104.4 51 90.2
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 6.6e-21 104.0 51 88.2
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 6.6e-21 104.0 51 90.2
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 8.6e-21 103.6 51 88.2
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 8.6e-21 103.6 52 86.5
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 8.6e-21 103.6 52 86.5
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 8.6e-21 103.6 52 88.5
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 8.6e-21 103.6 51 90.2
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 8.6e-21 103.6 51 90.2
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 1.1e-20 103.2 51 86.3
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 1.1e-20 103.2 51 86.3
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 1.1e-20 103.2 51 86.3
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 1.5e-20 102.8 51 88.2
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 1.5e-20 102.8 51 90.2
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 1.9e-20 102.4 52 84.6
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 1.9e-20 102.4 52 86.5
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 2.5e-20 102.1 51 88.2
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 2.5e-20 102.1 52 80.8
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 3.3e-20 101.7 51 88.2
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 3.3e-20 101.7 52 84.6
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 3.3e-20 101.7 52 84.6
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 4.3e-20 101.3 52 82.7
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 4.3e-20 101.3 52 82.7
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 4.3e-20 101.3 51 86.3
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 4.3e-20 101.3 51 88.2
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 4.3e-20 101.3 51 88.2
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 5.6e-20 100.9 51 88.2
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 5.6e-20 100.9 52 82.7
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 5.6e-20 100.9 51 82.4
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 5.6e-20 100.9 52 84.6
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 5.6e-20 100.9 52 84.6
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 5.6e-20 100.9 52 82.7
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 7.3e-20 100.5 52 80.8
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 7.3e-20 100.5 52 86.5
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 7.3e-20 100.5 52 82.7
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 9.5e-20 100.1 51 86.3
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 9.5e-20 100.1 52 82.7
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 1.2e-19 99.8 52 80.8
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 1.2e-19 99.8 52 86.5
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.2e-19 99.8 51 86.3
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 1.2e-19 99.8 51 86.3
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 1.6e-19 99.4 52 82.7
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.6e-19 99.4 51 84.3
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 1.6e-19 99.4 51 84.3
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 2.1e-19 99.0 52 80.8
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 2.1e-19 99.0 52 86.5
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 2.1e-19 99.0 52 86.5
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 2.1e-19 99.0 52 80.8
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 2.8e-19 98.6 51 84.3
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 2.8e-19 98.6 52 78.8
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 2.8e-19 98.6 52 80.8
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 2.8e-19 98.6 52 80.8
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 2.8e-19 98.6 52 78.8
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 3.6e-19 98.2 52 82.7
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 3.6e-19 98.2 51 86.3
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 3.6e-19 98.2 51 86.3
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 3.6e-19 98.2 52 80.8
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 3.6e-19 98.2 51 82.4
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 3.6e-19 98.2 52 78.8
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 4.7e-19 97.8 51 80.4
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 6.2e-19 97.4 51 86.3
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 6.2e-19 97.4 51 82.4
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 6.2e-19 97.4 52 80.8
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 6.2e-19 97.4 52 76.9
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 8.1e-19 97.1 51 82.4
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 8.1e-19 97.1 51 84.3
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 8.1e-19 97.1 52 78.8
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 1.1e-18 96.7 50 82.0
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 1.1e-18 96.7 52 78.8
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 1.1e-18 96.7 52 78.8
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.1e-18 96.7 51 84.3
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 1.4e-18 96.3 51 84.3
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 1.8e-18 95.9 51 82.4
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 1.8e-18 95.9 51 82.4
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 1.8e-18 95.9 51 82.4
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 1.8e-18 95.9 51 82.4
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 2.3e-18 95.5 85 55.3
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 2.3e-18 95.5 51 80.4
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 3.1e-18 95.1 50 84.0
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 3.1e-18 95.1 52 76.9
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 3.1e-18 95.1 85 55.3
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 5.2e-18 94.4 51 80.4
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 6.8e-18 94.0 51 80.4
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 6.8e-18 94.0 51 80.4
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 6.8e-18 94.0 51 80.4
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 8.9e-18 93.6 51 80.4
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 8.9e-18 93.6 51 80.4
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 8.9e-18 93.6 51 80.4
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 1.2e-17 93.2 51 78.4
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 1.2e-17 93.2 51 78.4
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 4.4e-17 91.3 51 78.4
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 4.4e-17 91.3 51 78.4
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 4.4e-17 91.3 51 78.4
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 4.1e-15 84.7 52 71.2
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 7.8e-14 80.5 50 62.0
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 1.7e-13 79.3 34 97.1
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 2.3e-13 79.0 34 91.2
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 3.0e-13 78.6 41 80.5
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 1.1e-12 76.6 34 91.2
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 1.1e-12 76.6 34 88.2
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 2.5e-12 75.5 34 88.2
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 2.5e-12 75.5 34 88.2
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 3.3e-12 75.1 52 61.5
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 3.3e-12 75.1 38 78.9
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 9.6e-12 73.6 50 62.0
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 2.8e-11 72.0 33 87.9
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 2.8e-11 72.0 71 52.1
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 4.7e-11 71.2 34 88.2
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 6.2e-11 70.9 34 79.4
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 2.2e-08 62.4 47 55.3


User provided reference genes

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