Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 0.0e+00 1353.6 713 100.0
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 5.7e-202 708.4 746 57.6
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 2.6e-199 699.5 733 56.1
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 1.7e-177 627.1 820 49.6
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 8.0e-172 608.2 787 49.7
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 3.1e-168 596.3 711 51.5
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 4.7e-156 555.8 600 55.0
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 6.4e-153 545.4 716 49.7
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 2.3e-126 457.2 782 42.8
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 5.1e-126 456.1 757 43.3
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 5.8e-122 442.6 747 44.8
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 2.6e-106 390.6 739 41.8
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 3.4e-106 390.2 739 38.7
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 2.9e-105 387.1 724 40.1
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 8.4e-105 385.6 727 42.5
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 3.2e-104 383.6 731 40.5
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 2.1e-103 380.9 763 40.2
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 1.3e-97 361.7 725 41.2
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 1.7e-97 361.3 724 43.2
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 5.0e-97 359.8 716 38.3
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 1.9e-96 357.8 715 41.3
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 1.3e-94 351.7 736 41.0
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 1.8e-94 351.3 731 42.1
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 2.5e-93 347.4 728 40.9
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 5.7e-93 346.3 725 40.6
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 8.2e-92 342.4 743 36.6
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 8.2e-92 342.4 743 36.6
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 3.1e-91 340.5 735 41.6
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 4.1e-91 340.1 760 40.1
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 6.1e-87 326.2 750 36.4
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 7.9e-87 325.9 755 38.5
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 8.8e-86 322.4 689 42.4
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 1.3e-84 318.5 736 41.2
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.4e-83 315.1 760 35.8
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 2.9e-81 307.4 723 38.6
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 1.1e-80 305.4 716 37.7
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 5.5e-80 303.1 749 39.3
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 1.4e-78 298.5 713 34.9
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 3.0e-78 297.4 717 37.2
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 5.2e-78 296.6 717 37.1
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 1.5e-77 295.0 728 34.9
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 6.3e-76 289.7 712 36.9
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 8.2e-76 289.3 747 39.4
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.2e-74 285.4 705 38.3
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 4.5e-74 283.5 705 38.2
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 2.9e-73 280.8 705 38.0
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 6.5e-73 279.6 800 35.5
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 2.5e-72 277.7 732 37.0
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 9.4e-72 275.8 700 34.7
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 6.7e-70 269.6 733 39.0
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 4.8e-68 263.5 715 35.2
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 1.4e-67 261.9 717 34.6
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 7.7e-66 256.1 710 31.8
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.7e-65 255.0 722 37.7
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 8.5e-65 252.7 730 37.7
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.1e-64 252.3 721 37.0
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 3.6e-63 247.3 727 34.4
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 8.0e-63 246.1 377 42.2
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 1.0e-62 245.7 712 30.9
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 3.0e-62 244.2 717 32.8
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 5.2e-62 243.4 688 32.8
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 7.5e-61 239.6 733 36.7
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 1.3e-60 238.8 692 32.2
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 7.0e-59 233.0 762 30.6
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 1.0e-57 229.2 700 30.7
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 4.2e-56 223.8 715 35.7
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 7.2e-56 223.0 727 36.2
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 1.6e-55 221.9 719 32.3
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 7.5e-53 213.0 741 30.8
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 9.8e-53 212.6 728 33.9
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 1.1e-51 209.1 717 31.5
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.4e-51 208.8 290 46.9
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 4.1e-51 207.2 712 33.6
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 3.5e-50 204.1 698 30.5
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 7.8e-50 203.0 737 33.0
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 1.0e-49 202.6 701 35.4
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 1.0e-49 202.6 729 31.8
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 1.7e-49 201.8 703 29.7
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 3.8e-49 200.7 732 32.0
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 1.0e-46 192.6 183 67.2
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 3.0e-46 191.0 721 29.3
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 3.4e-45 187.6 619 29.4
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 3.4e-45 187.6 696 30.9
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 3.4e-45 187.6 696 32.9
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 7.5e-45 186.4 737 28.9
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 2.9e-44 184.5 689 29.5
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 3.7e-44 184.1 713 29.9
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 3.7e-44 184.1 735 28.7
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 1.8e-43 181.8 700 33.3
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 4.1e-43 180.6 168 60.7
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 1.6e-42 178.7 725 32.8
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 2.7e-42 177.9 181 56.9
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 8.6e-41 172.9 726 32.4
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 5.6e-40 170.2 720 31.8
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 2.1e-39 168.3 177 58.2
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 2.1e-39 168.3 720 28.8
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 8.0e-39 166.4 689 29.5
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 8.0e-39 166.4 720 31.9
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 8.9e-38 162.9 248 43.5
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 2.0e-37 161.8 696 31.8
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 4.4e-37 160.6 169 53.8
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 7.5e-37 159.8 868 30.9
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 2.2e-36 158.3 724 29.8
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 4.9e-36 157.1 175 60.6
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 6.4e-36 156.8 707 30.6
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 3.2e-35 154.5 172 55.2
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 3.2e-35 154.5 166 53.0
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 3.2e-35 154.5 246 43.1
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 5.4e-35 153.7 707 26.3
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 3.5e-34 151.0 178 65.7
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 1.0e-33 149.4 200 48.0
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 5.0e-33 147.1 165 67.9
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 5.0e-33 147.1 743 27.7
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 4.3e-32 144.1 726 30.3
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 4.3e-32 144.1 721 30.0
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 8.1e-31 139.8 707 28.7
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 4.0e-30 137.5 137 57.7
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 1.5e-29 135.6 195 59.5
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 2.9e-28 131.3 713 29.0
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 4.9e-28 130.6 94 71.3
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 8.3e-28 129.8 154 49.4
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 1.9e-27 128.6 200 42.0
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 9.2e-27 126.3 134 67.9
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 1.2e-26 125.9 219 41.6
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 2.7e-26 124.8 144 52.8
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 6.0e-26 123.6 210 40.0
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 7.8e-26 123.2 89 70.8
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 1.0e-25 122.9 164 59.1
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 1.7e-25 122.1 89 70.8
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 1.7e-25 122.1 164 62.2
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 2.3e-25 121.7 87 71.3
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 3.9e-25 120.9 165 53.9
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 6.6e-25 120.2 72 84.7
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 8.6e-25 119.8 88 71.6
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 1.5e-24 119.0 583 31.6
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 1.5e-24 119.0 165 51.5
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 1.5e-24 119.0 87 69.0
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 2.5e-24 118.2 93 67.7
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 1.2e-23 115.9 91 64.8
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 4.7e-23 114.0 161 45.3
arahy.Tifrunner.gnm1.ann1.6TZ00L Arachis hypogaea HOM05D005042 ORTHO05D006080 9.9e-21 106.3 599 26.4
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 5.6e-16 90.5 90 53.3
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 4.7e-15 87.4 171 38.0
Manes.14G088800 Manihot esculenta HOM05D005042 ORTHO05D006080 5.8e-13 80.5 269 30.1
VMungo0771G0001 Vigna mungo HOM05D005042 ORTHO05D006080 1.4e-06 59.3 62 56.5


User provided reference genes

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