Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000725 Camellia sinensis var. sinensis HOM05D002893 ORTHO05D017726 6.6e-87 323.9 156 100.0
CSS0016438 Camellia sinensis var. sinensis HOM05D002893 ORTHO05D003387 2.1e-24 116.3 87 70.1
Dinv25674 Davidia involucrata HOM05D002893 ORTHO05D003387 8.2e-21 104.4 86 62.8
CSS0023379 Camellia sinensis var. sinensis HOM05D002893 ORTHO05D003387 2.6e-19 99.4 86 60.5
CSS0036153 Camellia sinensis var. sinensis HOM05D002893 ORTHO05D003387 2.6e-19 99.4 86 60.5
CSS0024252 Camellia sinensis var. sinensis HOM05D002893 ORTHO05D003387 5.9e-19 98.2 86 60.5
CSS0027251 Camellia sinensis var. sinensis HOM05D002893 ORTHO05D003387 5.9e-19 98.2 86 60.5
Rhsim10G0008700 Rhododendron simsii HOM05D002893 ORTHO05D003387 1.3e-18 97.1 87 57.5
Actinidia38213 Actinidia chinensis HOM05D002893 ORTHO05D003387 1.7e-18 96.7 86 57.0
vmacro05938 Vaccinium macrocarpon HOM05D002893 ORTHO05D003387 1.7e-18 96.7 87 58.6
GSVIVG01001817001 Vitis vinifera HOM05D002893 ORTHO05D003387 2.2e-18 96.3 87 59.8
Aqoxy5G03468 Aquilegia oxysepala HOM05D002893 ORTHO05D003387 5.5e-17 91.7 87 54.0
Duzib264G0096 Durio zibethinus HOM05D002893 ORTHO05D003387 7.2e-17 91.3 87 57.5
Dinv10981 Davidia involucrata HOM05D002893 ORTHO05D003387 9.4e-17 90.9 86 58.1
Actinidia09670 Actinidia chinensis HOM05D002893 ORTHO05D003387 1.6e-16 90.1 86 57.0
Thecc.04G030500 Theobroma cacao HOM05D002893 ORTHO05D003387 2.1e-16 89.7 86 58.1
MD09G1014800 Malus domestica HOM05D002893 ORTHO05D003387 2.7e-16 89.4 86 57.0
Nn4g22385 Nelumbo nucifera HOM05D002893 ORTHO05D003387 3.6e-16 89.0 86 54.7
COL.COLO4_08758 Corchorus olitorius HOM05D002893 ORTHO05D017726 4.7e-16 88.6 97 54.6
MBI11_g06761_MAGBIO Magnolia biondii HOM05D002893 ORTHO05D003387 4.7e-16 88.6 86 54.7
Gohir.A09G034400 Gossypium hirsutum HOM05D002893 ORTHO05D003387 6.1e-16 88.2 86 57.0
Gohir.D09G035300 Gossypium hirsutum HOM05D002893 ORTHO05D003387 6.1e-16 88.2 86 57.0
Gorai.006G040200 Gossypium raimondii HOM05D002893 ORTHO05D003387 6.1e-16 88.2 86 57.0
Prupe.3G302900 Prunus persica HOM05D002893 ORTHO05D003387 6.1e-16 88.2 86 57.0
TAR622G0433 Trochodendron aralioides HOM05D002893 ORTHO05D003387 6.1e-16 88.2 86 54.7
TAR629G0823 Trochodendron aralioides HOM05D002893 ORTHO05D003387 6.1e-16 88.2 86 54.7
MD17G1014900 Malus domestica HOM05D002893 ORTHO05D003387 8.0e-16 87.8 86 57.0
RcHm_v2.0_Chr2g0174861 Rosa chinensis HOM05D002893 ORTHO05D003387 8.0e-16 87.8 87 55.2
Haze_14840 Corylus avellana HOM05D002893 ORTHO05D003387 1.0e-15 87.4 87 56.3
Lju41A50T55 Lonicera japonica HOM05D002893 ORTHO05D003387 1.0e-15 87.4 86 57.0
TAR374G1033 Trochodendron aralioides HOM05D002893 ORTHO05D003387 1.4e-15 87.0 86 53.5
Atru.chr6.2519 Acer truncatum HOM05D002893 ORTHO05D003387 1.8e-15 86.7 86 57.0
Lsat_1_v5_gn_0_14341 Lactuca sativa HOM05D002893 ORTHO05D003387 2.3e-15 86.3 86 52.3
Atru.chr11.2283 Acer truncatum HOM05D002893 ORTHO05D003387 3.0e-15 85.9 86 52.3
Cfa007252 Carpinus fangiana HOM05D002893 ORTHO05D003387 3.0e-15 85.9 86 55.8
Duzib187G1811 Durio zibethinus HOM05D002893 ORTHO05D003387 3.0e-15 85.9 86 54.7
Hma1.2p1_0275F.1_g110950 Hydrangea macrophylla HOM05D002893 ORTHO05D017726 3.0e-15 85.9 91 49.5
Peaxi162Scf00420g00443 Petunia axillaris HOM05D002893 ORTHO05D003387 3.9e-15 85.5 86 53.5
Solyc02g093950.3 Solanum lycopersicum HOM05D002893 ORTHO05D003387 3.9e-15 85.5 86 55.8
Sopen02g038600 Solanum pennellii HOM05D002893 ORTHO05D003387 3.9e-15 85.5 86 55.8
PGSC0003DMG400020219 Solanum tuberosum HOM05D002893 ORTHO05D003387 3.9e-15 85.5 86 55.8
GSVIVG01010363001 Vitis vinifera HOM05D002893 ORTHO05D003387 3.9e-15 85.5 85 55.3
CAN.G473.80 Capsicum annuum HOM05D002893 ORTHO05D003387 6.7e-15 84.7 86 53.5
Manes.15G158400 Manihot esculenta HOM05D002893 ORTHO05D003387 6.7e-15 84.7 87 54.0
Potri.010G057300 Populus trichocarpa HOM05D002893 ORTHO05D003387 6.7e-15 84.7 86 53.5
Prupe.1G232000 Prunus persica HOM05D002893 ORTHO05D003387 8.8e-15 84.3 86 53.5
Sabra16G0214900 Salix brachista HOM05D002893 ORTHO05D003387 8.8e-15 84.3 86 53.5
MSTRG.3091 Avicennia marina HOM05D002893 ORTHO05D003387 1.1e-14 84.0 86 53.5
FAN09G3500 Fragaria x ananassa HOM05D002893 ORTHO05D003387 1.5e-14 83.6 87 54.0
Nitab4.5_0009757g0010 Nicotiana tabacum HOM05D002893 ORTHO05D003387 1.5e-14 83.6 86 53.5
ClCG11G006960 Citrullus lanatus HOM05D002893 ORTHO05D003387 2.0e-14 83.2 86 52.3
Manes.17G105600 Manihot esculenta HOM05D002893 ORTHO05D003387 2.0e-14 83.2 86 52.3
Nn3g16524 Nelumbo nucifera HOM05D002893 ORTHO05D003387 2.0e-14 83.2 87 51.7
CANSAT64G1237 Cannabis sativa HOM05D002893 ORTHO05D003387 2.6e-14 82.8 86 53.5
Duzib147G0805 Durio zibethinus HOM05D002893 ORTHO05D003387 2.6e-14 82.8 86 55.8
HanXRQChr14g0450891 Helianthus annuus HOM05D002893 ORTHO05D003387 2.6e-14 82.8 86 51.2
CiPaw.04G034800 Carya illinoinensis HOM05D002893 ORTHO05D003387 3.3e-14 82.4 86 53.5
Ciclev10030770m.g Citrus clementina HOM05D002893 ORTHO05D003387 3.3e-14 82.4 86 52.3
HanXRQChr12g0372301 Helianthus annuus HOM05D002893 ORTHO05D003387 3.3e-14 82.4 86 52.3
PGR142G1592 Punica granatum HOM05D002893 ORTHO05D003387 3.3e-14 82.4 86 55.8
RcHm_v2.0_Chr4g0430901 Rosa chinensis HOM05D002893 ORTHO05D003387 3.3e-14 82.4 86 52.3
Manes.13G016900 Manihot esculenta HOM05D002893 ORTHO05D003387 4.4e-14 82.0 86 52.3
Gorai.012G088700 Gossypium raimondii HOM05D002893 ORTHO05D003387 5.7e-14 81.6 86 52.3
FvH4_6g53080 Fragaria vesca HOM05D002893 ORTHO05D003387 7.4e-14 81.3 87 52.9
FAN02G1523 Fragaria x ananassa HOM05D002893 ORTHO05D003387 7.4e-14 81.3 87 52.9
FAN14G0374 Fragaria x ananassa HOM05D002893 ORTHO05D003387 7.4e-14 81.3 87 52.9
FAN14G1327 Fragaria x ananassa HOM05D002893 ORTHO05D003387 7.4e-14 81.3 87 52.9
Gohir.A05G340400 Gossypium hirsutum HOM05D002893 ORTHO05D003387 7.4e-14 81.3 86 52.3
TWI75G1758 Tripterygium wilfordii HOM05D002893 ORTHO05D003387 9.7e-14 80.9 86 48.8
CiPaw.03G052900 Carya illinoinensis HOM05D002893 ORTHO05D003387 1.3e-13 80.5 86 55.8
Potri.001G333600 Populus trichocarpa HOM05D002893 ORTHO05D003387 1.3e-13 80.5 86 51.2
Nitab4.5_0002887g0120 Nicotiana tabacum HOM05D002893 ORTHO05D003387 1.7e-13 80.1 86 52.3
PGR119G0470 Punica granatum HOM05D002893 ORTHO05D003387 1.7e-13 80.1 86 48.8
Gohir.D04G078800 Gossypium hirsutum HOM05D002893 ORTHO05D003387 2.2e-13 79.7 86 51.2
MD13G1115300 Malus domestica HOM05D002893 ORTHO05D003387 2.2e-13 79.7 86 50.0
TAR371G0635 Trochodendron aralioides HOM05D002893 ORTHO05D003387 2.2e-13 79.7 85 52.9
QL02p071998 Quercus lobata HOM05D002893 ORTHO05D003387 3.7e-13 79.0 87 52.9
CsaV3_6G001110 Cucumis sativus L. HOM05D002893 ORTHO05D003387 4.8e-13 78.6 87 50.6
Sed0012732 Sechium edule HOM05D002893 ORTHO05D003387 4.8e-13 78.6 86 51.2
Sc03g0006770 Simmondsia chinensis HOM05D002893 ORTHO05D003387 4.8e-13 78.6 86 51.2
ATR0686G058 Amborella trichopoda HOM05D002893 ORTHO05D003387 6.3e-13 78.2 86 51.2
Cpa.g.sc171.34 Carica papaya HOM05D002893 ORTHO05D017726 6.3e-13 78.2 87 51.7
Ciclev10014385m.g Citrus clementina HOM05D002893 ORTHO05D003387 6.3e-13 78.2 86 51.2
Oeu058769.1 Olea europaea HOM05D002893 ORTHO05D003387 6.3e-13 78.2 86 52.3
ECA246G4422 Erigeron canadensis HOM05D002893 ORTHO05D003387 8.2e-13 77.8 87 49.4
MELO3C008209.2 Cucumis melo HOM05D002893 ORTHO05D003387 1.4e-12 77.0 87 49.4
ECA238G2555 Erigeron canadensis HOM05D002893 ORTHO05D003387 1.8e-12 76.6 87 48.3
HanXRQChr15g0474971 Helianthus annuus HOM05D002893 ORTHO05D003387 1.8e-12 76.6 86 47.7
Lj6A823T55 Lonicera japonica HOM05D002893 ORTHO05D003387 1.8e-12 76.6 85 50.6
THA.LOC104802381 Tarenaya hassleriana HOM05D002893 ORTHO05D003387 1.8e-12 76.6 86 48.8
Lj1g0008810 Lotus japonicus HOM05D002893 ORTHO05D003387 3.1e-12 75.9 87 50.6
Sp6g29800 Schrenkiella parvula HOM05D002893 ORTHO05D003387 3.1e-12 75.9 86 48.8
Cc07_g00610 Coffea canephora HOM05D002893 ORTHO05D003387 4.1e-12 75.5 86 48.8
FAN12G2589 Fragaria x ananassa HOM05D002893 ORTHO05D003387 4.1e-12 75.5 86 48.8
FAN17G2054 Fragaria x ananassa HOM05D002893 ORTHO05D003387 4.1e-12 75.5 86 48.8
Carub.0006s1243 Capsella rubella HOM05D002893 ORTHO05D003387 7.0e-12 74.7 86 50.0
Lsat_1_v5_gn_8_149580 Lactuca sativa HOM05D002893 ORTHO05D003387 7.0e-12 74.7 84 50.0
Lalb_Chr02g0157821 Lupinus albus HOM05D002893 ORTHO05D003387 7.0e-12 74.7 85 50.6
Cfa009344 Carpinus fangiana HOM05D002893 ORTHO05D003387 9.1e-12 74.3 86 51.2
Haze_12378 Corylus avellana HOM05D002893 ORTHO05D003387 9.1e-12 74.3 86 50.0
FvH4_4g24120 Fragaria vesca HOM05D002893 ORTHO05D003387 1.2e-11 73.9 86 47.7
FAN07G1355 Fragaria x ananassa HOM05D002893 ORTHO05D003387 1.2e-11 73.9 86 47.7
Eucgr.H04660 Eucalyptus grandis HOM05D002893 ORTHO05D003387 1.6e-11 73.6 86 46.5
Thhalv10012767m.g Eutrema salsugineum HOM05D002893 ORTHO05D003387 1.6e-11 73.6 86 47.7
HanXRQChr17g0550161 Helianthus annuus HOM05D002893 ORTHO05D003387 1.6e-11 73.6 86 47.7
MSTRG.24125 Avicennia marina HOM05D002893 ORTHO05D003387 2.0e-11 73.2 87 46.0
PSO063G5911 Papaver somniferum HOM05D002893 ORTHO05D003387 2.0e-11 73.2 90 45.6
AT5G14230 Arabidopsis thaliana HOM05D002893 ORTHO05D003387 2.6e-11 72.8 86 48.8
arahy.Tifrunner.gnm1.ann1.53Z9F6 Arachis hypogaea HOM05D002893 ORTHO05D003387 2.6e-11 72.8 88 51.1
arahy.Tifrunner.gnm1.ann1.S4Z9Q7 Arachis hypogaea HOM05D002893 ORTHO05D003387 2.6e-11 72.8 88 51.1
EL10Ac5g11832 Beta vulgaris HOM05D002893 ORTHO05D003387 2.6e-11 72.8 87 46.0
ECA233G0407 Erigeron canadensis HOM05D002893 ORTHO05D003387 2.6e-11 72.8 86 43.0
SalBow1G0141 Salvia bowleyana HOM05D002893 ORTHO05D003387 2.6e-11 72.8 86 46.5
SalBow1G0350 Salvia bowleyana HOM05D002893 ORTHO05D003387 2.6e-11 72.8 86 46.5
CDE09G0940 Ceratophyllum demersum HOM05D002893 ORTHO05D003387 3.5e-11 72.4 86 44.2
Aa31LG11G15020 Aethionema arabicum HOM05D002893 ORTHO05D003387 4.5e-11 72.0 86 47.7
CARHR199110 Cardamine hirsuta HOM05D002893 ORTHO05D003387 4.5e-11 72.0 86 46.5
PSO782G1898 Papaver somniferum HOM05D002893 ORTHO05D003387 4.5e-11 72.0 90 44.4
TPR.G25630 Trifolium pratense HOM05D002893 ORTHO05D017726 4.5e-11 72.0 87 49.4
BcaNung03174 Brassica carinata HOM05D002893 ORTHO05D003387 7.7e-11 71.2 86 47.7
A03p06490 Brassica napus HOM05D002893 ORTHO05D003387 7.7e-11 71.2 86 50.0
COL.COLO4_12822 Corchorus olitorius HOM05D002893 ORTHO05D003387 7.7e-11 71.2 86 47.7
Gohir.D01G148500 Gossypium hirsutum HOM05D002893 ORTHO05D003387 1.3e-10 70.5 86 45.3
Thecc.02G275700 Theobroma cacao HOM05D002893 ORTHO05D003387 1.3e-10 70.5 86 44.2
AL6G24910 Arabidopsis lyrata HOM05D002893 ORTHO05D003387 1.7e-10 70.1 86 47.7
Medtr7g031370 Medicago truncatula HOM05D002893 ORTHO05D003387 1.7e-10 70.1 86 50.0
Ah.12g059400 Amaranthus hybridus HOM05D002893 ORTHO05D003387 2.2e-10 69.7 86 46.5
BcaC04g19051 Brassica carinata HOM05D002893 ORTHO05D003387 2.2e-10 69.7 86 46.5
C09p62930 Brassica napus HOM05D002893 ORTHO05D003387 2.2e-10 69.7 86 46.5
BolC9t59130H Brassica oleracea HOM05D002893 ORTHO05D003387 2.2e-10 69.7 86 46.5
Gohir.A01G161000 Gossypium hirsutum HOM05D002893 ORTHO05D003387 2.2e-10 69.7 86 45.3
BcaB01g06338 Brassica carinata HOM05D002893 ORTHO05D003387 2.9e-10 69.3 86 48.8
Cc11_g16700 Coffea canephora HOM05D002893 ORTHO05D003387 2.9e-10 69.3 87 49.4
Duzib251G0408 Durio zibethinus HOM05D002893 ORTHO05D003387 2.9e-10 69.3 86 44.2
AUR62036343 Chenopodium quinoa HOM05D002893 ORTHO05D003387 3.8e-10 68.9 107 40.2
Gorai.002G184300 Gossypium raimondii HOM05D002893 ORTHO05D003387 3.8e-10 68.9 86 44.2
BcaB08g36968 Brassica carinata HOM05D002893 ORTHO05D003387 6.5e-10 68.2 86 45.3
DCAR_011311 Daucus carota HOM05D002893 ORTHO05D003387 6.5e-10 68.2 86 45.3
BcaB01g05300 Brassica carinata HOM05D002893 ORTHO05D003387 8.5e-10 67.8 86 47.7
A10p24240 Brassica napus HOM05D002893 ORTHO05D003387 8.5e-10 67.8 86 45.3
C03p07490 Brassica napus HOM05D002893 ORTHO05D003387 8.5e-10 67.8 86 47.7
BraA10t44489Z Brassica rapa HOM05D002893 ORTHO05D003387 8.5e-10 67.8 86 45.3
Sc04g0009980 Simmondsia chinensis HOM05D002893 ORTHO05D003387 8.5e-10 67.8 85 47.1
BolC3t13250H Brassica oleracea HOM05D002893 ORTHO05D003387 1.1e-09 67.4 86 47.7
Lalb_Chr14g0363071 Lupinus albus HOM05D002893 ORTHO05D017726 1.9e-09 66.6 87 48.3
DCAR_007012 Daucus carota HOM05D002893 ORTHO05D003387 2.5e-09 66.2 85 44.7
QL03p054522 Quercus lobata HOM05D002893 ORTHO05D003387 4.2e-09 65.5 86 43.0
BraA03t09981Z Brassica rapa HOM05D002893 ORTHO05D003387 5.5e-09 65.1 86 46.5
Oeu049154.1 Olea europaea HOM05D002893 ORTHO05D003387 7.2e-09 64.7 105 41.0
CDE02G0478 Ceratophyllum demersum HOM05D002893 ORTHO05D003387 3.6e-08 62.4 86 44.2
Glyma.18G008500 Glycine max HOM05D002893 ORTHO05D003387 6.1e-08 61.6 87 37.9
Medtr3g085630 Medicago truncatula HOM05D002893 ORTHO05D003387 6.1e-08 61.6 86 39.5
Phvul.001G260100 Phaseolus vulgaris HOM05D002893 ORTHO05D003387 8.0e-08 61.2 86 38.4
SEGI_23234 Sequoiadendron giganteum HOM05D002893 ORTHO05D003387 8.0e-08 61.2 85 41.2
Migut.E00032 Erythranthe guttata HOM05D002893 ORTHO05D003387 1.0e-07 60.8 83 41.0
Ca_16476_v3 Cicer arietinum L. HOM05D002893 ORTHO05D017726 1.8e-07 60.1 86 37.2
Ca_16477_v3 Cicer arietinum L. HOM05D002893 ORTHO05D003387 1.8e-07 60.1 86 37.2
Ca_29987_v3 Cicer arietinum L. HOM05D002893 ORTHO05D003387 1.8e-07 60.1 86 37.2
Glyma.16G060400 Glycine max HOM05D002893 ORTHO05D003387 2.3e-07 59.7 86 40.7
Glyma.19G086700 Glycine max HOM05D002893 ORTHO05D003387 2.3e-07 59.7 86 41.9
Psat3g177400 Pisum sativum HOM05D002893 ORTHO05D003387 2.3e-07 59.7 86 40.7
SGA_v2.0_scaffold87G27135 Striga asiatica HOM05D002893 ORTHO05D008562 3.0e-07 59.3 83 41.0
CiPaw.05G113500 Carya illinoinensis HOM05D002893 ORTHO05D003387 4.0e-07 58.9 84 41.7
Hund10840 Selenicereus undatus HOM05D002893 ORTHO05D003387 4.0e-07 58.9 88 44.3
HPP92_021401 Vanilla planifolia HOM05D002893 ORTHO05D003387 4.0e-07 58.9 85 40.0
TPR.G21785 Trifolium pratense HOM05D002893 ORTHO05D003387 5.2e-07 58.5 86 38.4
Phvul.001G096200 Phaseolus vulgaris HOM05D002893 ORTHO05D003387 6.7e-07 58.2 86 41.9
SalBow8G1069 Salvia bowleyana HOM05D002893 ORTHO05D003387 8.8e-07 57.8 83 41.0
SGA_v2.0_scaffold18G08220 Striga asiatica HOM05D002893 ORTHO05D003387 8.8e-07 57.8 86 40.7
Migut.H00011 Erythranthe guttata HOM05D002893 ORTHO05D003387 1.2e-06 57.4 86 41.9
CSS0041404 Camellia sinensis var. sinensis HOM05D002893 ORTHO05D003387 1.5e-06 57.0 44 63.6
CANSAT01G0501 Cannabis sativa HOM05D002893 ORTHO05D003387 2.0e-06 56.6 96 40.6
Psat5g095720 Pisum sativum HOM05D002893 ORTHO05D003387 2.6e-06 56.2 86 34.9
AUR62005585 Chenopodium quinoa HOM05D002893 ORTHO05D003387 3.3e-06 55.8 85 40.0
VMungo1383G2167 Vigna mungo HOM05D002893 ORTHO05D003387 3.3e-06 55.8 86 37.2


User provided reference genes

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