Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 2.0e-95 352.4 178 100.0
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 6.4e-86 320.9 178 90.4
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 7.8e-84 313.9 174 89.7
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 7.8e-84 313.9 176 88.6
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 1.0e-83 313.5 174 90.2
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 3.0e-83 312.0 168 90.5
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 5.6e-82 307.8 168 89.3
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 8.1e-81 303.9 178 86.5
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 1.1e-80 303.5 178 84.8
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 6.8e-80 300.8 178 86.0
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 9.9e-79 297.0 159 91.8
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 1.1e-77 293.5 178 82.0
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 1.9e-77 292.7 176 83.0
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 2.4e-77 292.4 178 83.7
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 3.2e-77 292.0 178 80.9
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.1e-77 291.6 178 81.5
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 9.2e-77 290.4 178 84.8
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 1.6e-76 289.7 157 87.3
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 3.5e-76 288.5 178 80.9
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 3.5e-76 288.5 178 81.5
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 3.5e-76 288.5 227 67.4
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 6.0e-76 287.7 178 79.8
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 7.8e-76 287.3 178 79.8
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 7.8e-76 287.3 178 80.9
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 1.0e-75 287.0 178 80.3
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 1.3e-75 286.6 162 84.6
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.3e-75 286.6 180 80.6
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 1.3e-75 286.6 178 79.8
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 1.3e-75 286.6 155 88.4
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.7e-75 286.2 176 80.1
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 2.3e-75 285.8 171 83.0
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 3.0e-75 285.4 165 84.8
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 3.0e-75 285.4 176 78.4
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 3.0e-75 285.4 178 78.1
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 3.9e-75 285.0 178 81.5
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 3.9e-75 285.0 178 80.9
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 3.9e-75 285.0 178 80.9
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 5.1e-75 284.6 157 87.3
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 6.6e-75 284.3 178 82.0
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 8.6e-75 283.9 178 82.0
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 1.5e-74 283.1 180 80.6
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 1.5e-74 283.1 180 80.6
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 1.9e-74 282.7 174 79.3
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 2.5e-74 282.3 178 79.2
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 2.5e-74 282.3 179 80.4
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 4.3e-74 281.6 178 79.2
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 4.3e-74 281.6 178 79.2
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 5.6e-74 281.2 178 79.8
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 9.5e-74 280.4 178 79.2
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 9.5e-74 280.4 178 81.5
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.2e-73 280.0 178 78.1
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.2e-73 280.0 178 78.1
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 1.6e-73 279.6 176 79.5
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 1.6e-73 279.6 177 78.0
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 2.1e-73 279.3 173 79.8
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 2.1e-73 279.3 178 82.0
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 2.1e-73 279.3 174 79.9
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 2.8e-73 278.9 178 79.8
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 3.6e-73 278.5 178 80.9
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 6.2e-73 277.7 178 77.5
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 6.2e-73 277.7 178 78.7
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 1.1e-72 276.9 158 83.5
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 1.1e-72 276.9 178 78.1
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 1.1e-72 276.9 178 79.8
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 1.1e-72 276.9 178 78.7
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 1.8e-72 276.2 157 88.5
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 2.3e-72 275.8 176 79.5
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 2.3e-72 275.8 167 80.2
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.0e-72 275.0 151 85.4
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 4.0e-72 275.0 149 89.3
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 5.2e-72 274.6 176 80.1
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 5.2e-72 274.6 178 77.5
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 5.2e-72 274.6 178 77.0
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 6.8e-72 274.2 151 85.4
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 6.8e-72 274.2 151 85.4
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 6.8e-72 274.2 151 85.4
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 6.8e-72 274.2 152 88.2
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 8.9e-72 273.9 178 76.4
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 8.9e-72 273.9 168 77.4
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 8.9e-72 273.9 151 84.8
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 8.9e-72 273.9 151 84.8
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 1.2e-71 273.5 157 84.7
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 1.2e-71 273.5 167 80.2
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 1.5e-71 273.1 178 76.4
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.5e-71 273.1 173 77.5
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 2.0e-71 272.7 176 79.5
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 2.0e-71 272.7 178 77.0
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 2.0e-71 272.7 178 76.4
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.6e-71 272.3 151 84.8
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.6e-71 272.3 151 84.8
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 2.6e-71 272.3 151 85.4
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 3.4e-71 271.9 167 79.6
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 4.4e-71 271.6 178 75.8
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 4.4e-71 271.6 178 75.8
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 5.8e-71 271.2 146 89.7
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 5.8e-71 271.2 178 74.7
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 7.6e-71 270.8 151 84.1
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 7.6e-71 270.8 178 75.8
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 7.6e-71 270.8 178 75.8
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 7.6e-71 270.8 175 77.7
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 7.6e-71 270.8 178 74.7
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 9.9e-71 270.4 178 75.3
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 9.9e-71 270.4 178 75.3
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 9.9e-71 270.4 176 78.4
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 1.3e-70 270.0 180 78.3
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 2.2e-70 269.2 178 76.4
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 2.2e-70 269.2 149 82.6
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 2.2e-70 269.2 149 82.6
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 2.2e-70 269.2 178 75.3
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 2.2e-70 269.2 181 77.3
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 4.9e-70 268.1 178 76.4
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 6.4e-70 267.7 178 75.3
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 6.4e-70 267.7 178 75.3
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 8.4e-70 267.3 178 76.4
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 8.4e-70 267.3 178 76.4
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 1.4e-69 266.5 175 76.6
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 1.4e-69 266.5 165 79.4
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 2.4e-69 265.8 178 75.8
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 2.4e-69 265.8 178 74.2
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 7.1e-69 264.2 160 82.5
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 2.1e-68 262.7 151 81.5
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 6.0e-68 261.2 181 72.9
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 6.0e-68 261.2 146 85.6
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 3.0e-67 258.8 178 73.6
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 1.5e-66 256.5 181 71.3
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 1.9e-66 256.1 180 71.1
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 2.5e-66 255.8 181 71.8
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 4.3e-66 255.0 181 71.3
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 5.6e-66 254.6 175 70.9
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 1.2e-65 253.4 178 72.5
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 1.2e-65 253.4 178 72.5
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 4.4e-63 245.0 149 77.9
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 2.2e-62 242.7 138 82.6
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 1.1e-61 240.4 146 76.7
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 1.1e-61 240.4 152 75.7
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 1.1e-61 240.4 138 81.2
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 5.4e-61 238.0 152 74.3
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 1.2e-60 236.9 158 74.1
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 6.6e-59 231.1 155 75.5
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 5.3e-56 221.5 135 80.7
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 5.3e-56 221.5 137 81.0
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 4.2e-53 211.8 178 63.5
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 1.2e-52 210.3 142 68.3
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 1.8e-51 206.5 194 58.8
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 9.6e-50 200.7 132 73.5
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 6.4e-46 188.0 111 77.5
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 2.4e-45 186.0 154 63.0
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 4.2e-45 185.3 134 65.7
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 1.5e-42 176.8 108 85.2
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 1.9e-42 176.4 134 62.7
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 2.1e-41 172.9 133 59.4
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 1.4e-40 170.2 134 59.7
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 3.5e-36 155.6 91 83.5
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.1e-34 150.6 178 52.2
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 6.3e-33 144.8 88 81.8
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 2.4e-32 142.9 86 83.7
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 1.5e-31 140.2 120 54.2
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.2e-28 130.6 103 63.1
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 2.3e-27 126.3 105 67.6
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 8.8e-27 124.4 98 66.3
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 2.2e-25 119.8 71 81.7
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.1e-24 115.9 174 39.1
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.1e-24 115.9 126 43.7
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 5.0e-22 108.6 178 42.7
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 5.0e-22 108.6 152 38.8
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 5.0e-22 108.6 152 38.8
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 1.1e-21 107.5 57 84.2
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 2.3e-19 99.8 76 64.5
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 2.3e-19 99.8 73 65.8
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 5.7e-18 95.1 74 67.6
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 9.1e-16 87.8 55 76.4
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 2.0e-15 86.7 100 42.0
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 2.0e-15 86.7 100 42.0
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 1.3e-14 84.0 95 42.1
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 4.7e-12 75.5 47 63.8
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 5.7e-10 68.6 95 41.1


User provided reference genes

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