Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 2374.0 1322 100.0
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1998.8 1322 81.5
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1968.4 1324 83.2
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1889.0 1343 79.7
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1813.5 1327 73.8
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1787.7 1360 72.8
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1726.1 1325 70.4
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1724.9 1364 68.2
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1713.0 1254 74.0
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1709.1 1225 71.8
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1698.7 1399 68.3
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1697.9 1223 72.7
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1691.4 1223 72.2
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1686.8 1335 69.5
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1684.1 1324 68.5
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1681.0 1222 74.9
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1676.4 1326 67.8
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1667.5 1239 71.6
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1662.9 1224 71.2
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1649.8 1226 71.4
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1643.6 1225 71.5
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1641.3 1230 72.0
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1639.4 1322 66.3
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1639.0 1330 65.9
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1634.4 1215 70.9
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1631.7 1322 66.3
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1630.9 1184 71.5
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1630.5 1189 70.4
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1624.4 1332 65.5
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1620.1 1223 70.0
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1617.1 1238 70.5
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 1616.3 1204 70.6
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1615.1 1231 69.9
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1613.2 1397 65.0
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1612.4 1330 65.1
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1610.9 1277 68.9
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1603.2 1325 65.7
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1589.7 1232 67.3
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1588.2 1328 66.9
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1587.4 1237 69.0
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1586.6 1226 68.6
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1586.2 1208 70.4
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1583.2 1229 67.9
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1582.4 1341 65.7
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1580.1 1241 69.1
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1579.7 1327 65.4
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1577.0 1206 69.4
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1576.2 1230 68.5
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 1568.1 1244 67.7
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1566.6 1229 66.5
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1566.2 1224 67.7
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1565.8 1204 69.6
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1565.4 1230 68.9
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1564.3 1234 67.7
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1562.0 1219 66.7
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1561.6 1204 69.7
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1561.6 1223 67.3
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1561.2 1234 68.0
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1558.1 1241 68.1
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1556.2 1340 64.2
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1548.1 1225 67.8
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1540.4 1251 67.4
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1535.0 1233 67.3
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1531.5 1335 65.0
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 1528.1 1188 68.6
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1526.5 1241 66.5
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1526.1 1224 65.8
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 1524.6 1224 67.9
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1523.1 1233 67.4
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1517.3 1239 67.0
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1511.9 1285 64.7
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1508.8 1222 66.2
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1506.1 1218 65.8
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1497.6 1222 66.0
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 1473.0 1225 66.8
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 1471.4 1353 61.1
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1468.4 1216 65.9
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1459.9 1351 60.5
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 1452.2 1243 65.2
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1451.8 1241 64.3
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1451.8 1192 65.7
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 1443.3 1353 61.0
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 1442.2 1193 66.4
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 1441.4 1198 66.3
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 1431.8 1228 64.6
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1424.5 1194 66.2
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1424.5 1194 66.2
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1418.7 945 81.7
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1411.4 1202 65.2
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1405.2 1200 65.1
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1395.6 1229 61.7
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1392.5 1247 60.5
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1391.3 1079 69.0
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1358.2 1172 62.4
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1347.8 1219 59.6
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1311.2 1316 56.6
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1308.9 1221 61.0
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 0.0e+00 1303.5 1259 58.1
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1286.2 1217 59.2
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 0.0e+00 1275.8 1230 56.5
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 0.0e+00 1208.7 734 84.5
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 0.0e+00 1203.7 1058 63.2
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 0.0e+00 1194.1 1224 52.9
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 0.0e+00 1191.8 1282 52.3
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 0.0e+00 1159.1 1262 51.3
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 0.0e+00 1147.9 1251 52.1
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 7.1e-307 1057.7 1241 48.3
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 8.1e-303 1044.3 1228 48.9
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 6.7e-273 944.9 1334 45.2
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 3.4e-269 932.6 741 68.6
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 2.2e-231 807.0 1105 44.0
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 7.3e-203 712.2 873 54.2
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 6.2e-202 709.1 539 73.3
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 8.9e-201 705.3 429 81.6
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 7.6e-192 675.6 538 70.8
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 3.2e-190 670.2 454 77.1
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 1.7e-167 594.7 674 55.8
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.9e-158 564.7 1198 35.1
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 4.6e-157 560.1 1208 34.6
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 2.4e-153 547.7 1210 35.4
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 2.5e-150 537.7 1225 34.2
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 1.7e-143 515.0 610 48.7
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 2.3e-140 504.6 1199 34.2
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 1.9e-134 485.0 1182 31.6
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 1.2e-117 429.1 1034 33.8
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 2.4e-105 388.3 1029 32.2
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 1.1e-102 379.4 1322 27.6
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 9.8e-91 339.7 332 58.1
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 1.4e-84 319.3 526 40.5
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 2.6e-83 315.1 502 40.4
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 4.1e-81 307.8 251 65.3
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 7.9e-48 197.2 217 51.6
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 8.4e-42 177.2 1174 25.0
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.3e-39 169.1 348 35.3
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 1.1e-33 150.2 1239 24.6
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.8e-31 142.9 129 58.9
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 5.7e-30 137.9 147 51.7
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 1.3e-29 136.7 105 65.7
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 9.1e-28 130.6 136 56.6
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 9.4e-25 120.6 187 40.6
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 7.4e-22 110.9 127 49.6
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 1.4e-20 106.7 191 38.2
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 5.3e-20 104.8 68 75.0
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 2.2e-18 99.4 61 80.3
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 8.5e-18 97.4 112 54.5
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 2.5e-17 95.9 97 52.6
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 7.2e-17 94.4 71 62.0
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 2.1e-16 92.8 73 63.0
BraA02t09256Z Brassica rapa HOM05D004672 ORTHO05D005732 8.0e-16 90.9 72 62.5
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 7.5e-14 84.3 62 66.1
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 7.5e-14 84.3 62 66.1
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 5.3e-12 78.2 84 42.9
arahy.Tifrunner.gnm1.ann1.F8N9WK Arachis hypogaea HOM05D000158 ORTHO05D000197 1.6e-08 66.6 86 46.5
SGA_v2.0_scaffold32G12947 Striga asiatica HOM05D004672 ORTHO05D005732 2.7e-08 65.9 76 46.1
Ah.01g011940 Amaranthus hybridus HOM05D004672 ORTHO05D005732 1.8e-07 63.2 39 71.8
SalBow1G8382 Salvia bowleyana HOM05D004672 ORTHO05D005732 5.2e-07 61.6 41 75.6
unitig_21.g20701 Utricularia gibba HOM05D004672 ORTHO05D005732 8.8e-07 60.8 50 60.0
Glyma.07G215100 Glycine max HOM05D005611 ORTHO05D006852 4.4e-06 58.5 36 72.2


User provided reference genes

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