Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 7.9e-32 139.8 70 100.0
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.8e-31 138.7 70 98.6
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 5.9e-27 123.6 66 90.9
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 6.5e-26 120.2 66 89.4
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 8.5e-26 119.8 66 90.9
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 1.4e-25 119.0 62 93.5
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 1.9e-25 118.6 62 93.5
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 3.2e-25 117.9 62 91.9
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 1.2e-24 115.9 62 90.3
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 1.2e-24 115.9 62 90.3
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 1.6e-24 115.5 61 91.8
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 2.1e-24 115.2 62 90.3
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 2.7e-24 114.8 61 90.2
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 2.7e-24 114.8 61 91.8
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 2.7e-24 114.8 61 91.8
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 4.7e-24 114.0 67 86.6
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 6.1e-24 113.6 61 88.5
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 6.1e-24 113.6 61 90.2
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 6.1e-24 113.6 61 90.2
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 6.1e-24 113.6 61 90.2
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 7.9e-24 113.2 62 87.1
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 7.9e-24 113.2 62 88.7
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 1.8e-23 112.1 61 88.5
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 2.3e-23 111.7 62 83.9
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 2.3e-23 111.7 62 87.1
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 2.3e-23 111.7 61 85.2
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 3.0e-23 111.3 62 87.1
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 3.9e-23 110.9 61 85.2
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 3.9e-23 110.9 62 83.9
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 5.1e-23 110.5 60 86.7
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 5.1e-23 110.5 67 79.1
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 5.1e-23 110.5 61 85.2
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 5.1e-23 110.5 61 83.6
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 6.7e-23 110.2 64 82.8
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 8.8e-23 109.8 61 83.6
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 8.8e-23 109.8 61 83.6
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 8.8e-23 109.8 61 83.6
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 1.1e-22 109.4 61 83.6
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 1.1e-22 109.4 61 82.0
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.1e-22 109.4 61 83.6
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 1.5e-22 109.0 60 85.0
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 1.5e-22 109.0 62 82.3
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 2.0e-22 108.6 61 83.6
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 2.0e-22 108.6 61 83.6
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 2.0e-22 108.6 61 82.0
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 2.0e-22 108.6 61 83.6
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 2.6e-22 108.2 63 77.8
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 2.6e-22 108.2 61 83.6
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 2.6e-22 108.2 62 82.3
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 3.3e-22 107.8 63 77.8
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 3.3e-22 107.8 63 77.8
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 4.4e-22 107.5 61 82.0
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 4.4e-22 107.5 61 83.6
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 4.4e-22 107.5 63 77.8
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 4.4e-22 107.5 63 77.8
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 5.7e-22 107.1 62 80.6
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 5.7e-22 107.1 61 80.3
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 7.4e-22 106.7 61 82.0
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 7.4e-22 106.7 61 80.3
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 7.4e-22 106.7 60 83.3
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 9.7e-22 106.3 61 78.7
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 9.7e-22 106.3 59 84.7
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 1.3e-21 105.9 63 77.8
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.3e-21 105.9 62 79.0
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 1.3e-21 105.9 61 80.3
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.3e-21 105.9 62 80.6
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 1.7e-21 105.5 60 81.7
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.7e-21 105.5 61 77.0
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 1.7e-21 105.5 61 78.7
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 2.2e-21 105.1 62 77.4
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 2.2e-21 105.1 60 81.7
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 2.2e-21 105.1 60 81.7
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 2.2e-21 105.1 61 78.7
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 2.2e-21 105.1 61 77.0
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 2.2e-21 105.1 61 78.7
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 2.8e-21 104.8 63 76.2
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 3.7e-21 104.4 61 77.0
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 3.7e-21 104.4 61 77.0
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 3.7e-21 104.4 61 75.4
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 4.8e-21 104.0 59 79.7
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 6.3e-21 103.6 61 75.4
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 6.3e-21 103.6 61 75.4
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 1.4e-20 102.4 59 78.0
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.4e-20 102.4 61 78.7
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.4e-20 102.4 61 77.0
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 1.8e-20 102.1 63 69.8
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 1.8e-20 102.1 61 77.0
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 2.4e-20 101.7 62 74.2
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 3.1e-20 101.3 55 87.3
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 4.1e-20 100.9 61 72.1
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 4.1e-20 100.9 61 75.4
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 4.1e-20 100.9 59 76.3
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 5.3e-20 100.5 60 76.7
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 6.9e-20 100.1 61 70.5
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 1.5e-19 99.0 61 73.8
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.5e-19 99.0 61 70.5
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 1.5e-19 99.0 60 76.7
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 2.6e-19 98.2 54 83.3
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 2.6e-19 98.2 57 77.2
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 3.4e-19 97.8 59 74.6
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 5.9e-19 97.1 60 73.3
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.0e-18 96.3 59 72.9
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 1.0e-18 96.3 61 72.1
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 1.0e-18 96.3 61 72.1
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 1.7e-18 95.5 61 68.9
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 1.7e-18 95.5 59 71.2
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 2.2e-18 95.1 63 66.7
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 2.2e-18 95.1 63 69.8
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 2.2e-18 95.1 59 71.2
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 2.9e-18 94.7 63 66.7
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 2.9e-18 94.7 59 74.6
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 2.9e-18 94.7 59 74.6
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 2.9e-18 94.7 59 74.6
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 2.9e-18 94.7 59 74.6
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 3.8e-18 94.4 61 70.5
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 6.5e-18 93.6 61 70.5
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 1.9e-17 92.0 61 67.2
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 1.9e-17 92.0 53 73.6
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 3.2e-17 91.3 61 65.6
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 5.5e-17 90.5 61 65.6
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 1.6e-16 89.0 61 63.9
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 2.7e-16 88.2 53 73.6
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 6.1e-16 87.0 60 65.0
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 6.1e-16 87.0 60 65.0
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 6.1e-16 87.0 59 62.7
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 1.8e-15 85.5 57 66.7
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 3.0e-15 84.7 60 60.0
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 3.0e-15 84.7 61 59.0
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 5.2e-15 84.0 60 58.3
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 6.7e-15 83.6 60 60.0
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 8.8e-15 83.2 60 60.0
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 8.8e-15 83.2 60 60.0
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 8.8e-15 83.2 60 60.0
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 8.8e-15 83.2 60 60.0
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 8.8e-15 83.2 60 60.0
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 4.4e-14 80.9 61 60.7
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.7e-13 79.0 60 56.7
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 2.2e-13 78.6 60 56.7
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 4.1e-12 74.3 50 64.0
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 9.1e-12 73.2 58 51.7
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 5.0e-10 67.4 56 58.9
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 2.7e-08 61.6 56 53.6
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 4.7e-08 60.8 64 51.6
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 1.2e-06 56.2 66 39.4
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 2.0e-06 55.5 35 68.6


User provided reference genes

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