Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 1.2e-129 466.5 236 100.0
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 3.5e-108 395.2 224 89.3
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 8.1e-105 384.0 249 81.5
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 9.9e-103 377.1 223 84.8
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 2.2e-102 375.9 223 85.7
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 4.9e-102 374.8 223 84.8
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 1.4e-101 373.2 223 83.4
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 2.4e-101 372.5 224 83.0
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 7.1e-101 370.9 226 81.4
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 9.3e-101 370.5 223 82.5
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 9.3e-101 370.5 223 81.2
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 3.5e-100 368.6 249 77.1
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 4.6e-100 368.2 223 81.2
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 6.0e-100 367.9 223 83.0
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 6.0e-100 367.9 226 80.5
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.0e-99 367.1 222 82.9
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 1.0e-99 367.1 223 81.2
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.8e-99 366.3 222 82.4
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 1.8e-99 366.3 224 82.1
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 2.3e-99 365.9 221 82.4
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 2.3e-99 365.9 223 80.7
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 2.3e-99 365.9 223 83.0
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 3.0e-99 365.5 226 81.0
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 3.0e-99 365.5 223 80.7
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 6.7e-99 364.4 223 82.1
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 8.7e-99 364.0 223 82.1
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 1.1e-98 363.6 223 82.5
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 1.1e-98 363.6 223 83.0
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 1.5e-98 363.2 224 80.4
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 1.9e-98 362.8 234 79.1
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 2.5e-98 362.5 223 81.2
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 2.5e-98 362.5 223 81.6
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 3.3e-98 362.1 223 80.3
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 4.3e-98 361.7 224 81.2
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 4.3e-98 361.7 226 80.5
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 4.3e-98 361.7 224 80.4
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 7.4e-98 360.9 223 79.8
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 9.6e-98 360.5 223 81.2
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 9.6e-98 360.5 223 81.2
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 9.6e-98 360.5 223 78.9
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 1.6e-97 359.8 224 81.7
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 2.1e-97 359.4 223 78.0
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 3.7e-97 358.6 226 81.0
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 4.8e-97 358.2 221 80.5
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 6.2e-97 357.8 225 77.8
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 6.2e-97 357.8 238 77.7
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 1.4e-96 356.7 222 81.5
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 3.1e-96 355.5 223 81.2
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 4.0e-96 355.1 230 77.8
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 5.3e-96 354.8 226 79.2
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 6.9e-96 354.4 223 80.7
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 6.9e-96 354.4 223 79.4
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 9.0e-96 354.0 223 81.6
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 1.2e-95 353.6 243 76.1
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 1.5e-95 353.2 226 78.3
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 2.0e-95 352.8 223 78.9
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 5.8e-95 351.3 223 78.5
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 7.6e-95 350.9 224 77.7
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 7.6e-95 350.9 223 79.4
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 1.0e-94 350.5 223 79.4
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 1.3e-94 350.1 223 77.6
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 1.3e-94 350.1 223 78.0
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 2.2e-94 349.4 224 77.7
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 2.2e-94 349.4 224 77.7
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 2.9e-94 349.0 224 76.8
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 2.9e-94 349.0 234 77.8
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 6.5e-94 347.8 251 72.1
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 1.9e-93 346.3 224 75.9
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 4.2e-93 345.1 218 78.4
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 4.2e-93 345.1 220 79.5
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 7.1e-93 344.4 224 76.3
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 7.1e-93 344.4 224 76.8
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 9.3e-93 344.0 224 78.1
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 2.1e-92 342.8 242 71.1
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 7.9e-92 340.9 218 77.5
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 7.9e-92 340.9 218 77.5
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 1.3e-91 340.1 226 76.1
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 2.3e-91 339.3 224 76.3
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 3.9e-91 338.6 223 77.6
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 6.7e-91 337.8 236 71.6
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 7.4e-90 334.3 221 74.7
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 6.2e-89 331.3 227 73.6
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 8.2e-89 330.9 226 75.7
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 5.3e-88 328.2 224 74.1
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 6.5e-86 321.2 224 72.8
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 6.5e-86 321.2 219 77.2
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 2.5e-85 319.3 233 71.2
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 7.1e-85 317.8 226 70.8
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 3.5e-84 315.5 197 79.7
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 3.5e-84 315.5 227 72.7
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.3e-83 313.5 196 80.6
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 1.9e-82 309.7 223 73.1
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 3.3e-82 308.9 256 66.0
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 9.7e-82 307.4 192 80.7
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 9.0e-80 300.8 198 74.7
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 7.7e-79 297.7 234 67.9
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 2.9e-78 295.8 173 85.5
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 2.5e-77 292.7 222 68.5
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 2.7e-76 289.3 192 75.5
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 3.6e-76 288.9 257 61.9
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 1.7e-73 280.0 219 67.1
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 3.7e-73 278.9 194 70.6
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 1.5e-71 273.5 223 66.4
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.6e-71 272.7 176 77.8
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 7.2e-69 264.6 220 65.0
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 1.6e-60 236.9 223 57.4
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 7.5e-58 228.0 230 54.8
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 1.3e-54 217.2 202 52.5
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 2.2e-54 216.5 205 52.2
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 8.5e-54 214.5 203 51.2
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 8.0e-52 208.0 197 56.9
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 1.5e-50 203.8 222 52.3
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.7e-46 190.3 167 55.1
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 2.7e-39 166.4 167 56.3
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 7.5e-34 148.3 92 78.3
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 3.9e-30 136.0 75 92.0
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 6.4e-25 118.6 96 67.7
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 6.0e-23 112.1 108 63.0
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 3.0e-22 109.8 73 79.5
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 5.0e-22 109.0 78 65.4
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 4.7e-20 102.4 108 58.3
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 8.1e-20 101.7 166 36.7
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 4.0e-19 99.4 180 40.0
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 4.0e-19 99.4 79 57.0
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 2.0e-18 97.1 59 78.0
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 4.4e-18 95.9 76 65.8
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 1.9e-16 90.5 108 53.7
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 2.7e-15 86.7 203 36.0
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 3.5e-15 86.3 93 53.8
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 1.3e-14 84.3 75 60.0
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 1.3e-14 84.3 56 73.2
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 1.3e-14 84.3 56 73.2
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 3.9e-14 82.8 89 55.1
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 5.1e-14 82.4 50 78.0
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 5.1e-14 82.4 143 39.2
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 3.3e-13 79.7 102 46.1
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 3.3e-13 79.7 55 69.1
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 3.6e-12 76.3 219 29.7
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 6.2e-12 75.5 49 73.5
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 3.4e-10 69.7 93 45.2
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 4.4e-10 69.3 56 64.3
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.7e-09 67.4 59 47.5
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 5.4e-08 62.4 184 23.4
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 7.1e-08 62.0 202 24.8
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 1.2e-07 61.2 169 26.0
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 2.1e-07 60.5 203 26.1
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 2.1e-07 60.5 195 24.1
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 4.6e-07 59.3 169 27.2
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 4.6e-07 59.3 170 23.5
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 6.0e-07 58.9 169 27.2
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 6.0e-07 58.9 169 27.2
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 6.0e-07 58.9 170 25.9
SGA_v2.0_scaffold467G52044 Striga asiatica HOM05D000074 ORTHO05D006342 6.0e-07 58.9 43 67.4
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 7.8e-07 58.5 203 24.6
Actinidia40017 Actinidia chinensis HOM05D006384 ORTHO05D007917 2.3e-06 57.0 194 24.2
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 2.3e-06 57.0 183 26.2
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 3.0e-06 56.6 202 23.8
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 3.0e-06 56.6 180 23.9
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 3.9e-06 56.2 203 25.1
Ca_08852_v3 Cicer arietinum L. HOM05D006384 ORTHO05D007917 5.1e-06 55.8 168 24.4
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 8.6e-06 55.1 168 23.2


User provided reference genes

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