Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000654 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 6.6e-173 610.5 292 100.0
CSS0034752 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D007254 2.7e-89 332.8 299 62.5
CSS0036610 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D007254 6.5e-88 328.2 312 59.0
CSS0022949 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.1e-82 310.8 308 55.8
Rhsim13G0004500 Rhododendron simsii HOM05D008183 ORTHO05D007254 4.3e-31 139.4 327 30.0
CSS0027326 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 7.4e-31 138.7 385 28.1
CSS0039886 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.4e-29 133.7 161 41.6
Rhsim04G0100600 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.6e-28 130.2 286 30.4
CSS0008839 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 8.4e-27 125.2 387 26.6
Rhsim11G0009800 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.2e-26 123.2 305 29.8
CSS0013917 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.6e-25 120.9 148 42.6
CSS0012014 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 3.5e-25 119.8 148 41.9
Rhsim01G0064200 Rhododendron simsii HOM05D008183 ORTHO05D007254 6.0e-25 119.0 279 30.8
Rhsim06G0103400 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.5e-23 114.4 421 24.2
CSS0007562 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 4.3e-23 112.8 147 43.5
CSS0001686 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.3e-22 111.3 306 29.1
Rhsim07G0138700 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.4e-21 107.8 158 36.1
Rhsim03G0084200 Rhododendron simsii HOM05D008183 ORTHO05D007254 2.4e-21 107.1 203 33.5
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 3.1e-21 106.7 235 31.5
CSS0000077 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 6.9e-21 105.5 148 39.9
RhsimUnG0047500 Rhododendron simsii HOM05D008183 ORTHO05D007254 6.9e-21 105.5 175 37.7
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 6.9e-21 105.5 176 35.8
Rhsim01G0155500 Rhododendron simsii HOM05D000003 ORTHO05D007254 1.2e-20 104.8 156 37.2
Rhsim03G0019700 Rhododendron simsii HOM05D008183 ORTHO05D007254 2.6e-20 103.6 159 37.7
Rhsim03G0019800 Rhododendron simsii HOM05D008183 ORTHO05D007254 2.6e-20 103.6 159 37.7
CSS0043494 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 7.6e-20 102.1 141 38.3
COL.COLO4_07023 Corchorus olitorius HOM05D000003 ORTHO05D000004 7.6e-20 102.1 355 25.9
Rhsim01G0039500 Rhododendron simsii HOM05D000003 ORTHO05D007254 7.6e-20 102.1 286 26.6
Rhsim08G0082000 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.0e-19 101.7 175 36.6
CSS0023048 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 4.9e-19 99.4 138 39.9
vmacro20413 Vaccinium macrocarpon HOM05D000009 ORTHO05D000008 4.9e-19 99.4 159 35.2
COL.COLO4_15583 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.9e-18 97.4 377 24.4
Rhsim01G0063000 Rhododendron simsii HOM05D008183 ORTHO05D007254 2.5e-18 97.1 151 37.1
CSS0035533 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 4.6e-17 92.8 275 27.6
CSS0027596 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.0e-16 91.7 302 26.8
vmacro23070 Vaccinium macrocarpon HOM05D000626 ORTHO05D007254 1.3e-16 91.3 155 36.1
CSS0048899 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.3e-16 90.5 137 35.0
Rhsim02G0203700 Rhododendron simsii HOM05D000001 ORTHO05D009494 2.3e-16 90.5 131 38.9
Rhsim01G0167200 Rhododendron simsii HOM05D000003 ORTHO05D007254 8.7e-16 88.6 157 35.0
Lj1P1217T36 Lonicera japonica HOM05D008183 ORTHO05D007254 1.1e-15 88.2 138 35.5
Rhsim12G0010300 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.5e-15 87.8 276 27.5
FvH4_5g08801 Fragaria vesca HOM05D000003 ORTHO05D000004 1.9e-15 87.4 335 26.0
Rhsim01G0165600 Rhododendron simsii HOM05D000003 ORTHO05D007254 9.7e-15 85.1 159 34.0
CSS0035557 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D000004 1.6e-14 84.3 302 24.8
Rhsim03G0134300 Rhododendron simsii HOM05D008183 ORTHO05D007254 4.8e-14 82.8 155 32.9
CSS0016507 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 6.3e-14 82.4 148 36.5
CSS0006002 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.1e-13 81.6 224 28.1
COL.COLO4_28797 Corchorus olitorius HOM05D000003 ORTHO05D000004 4.1e-13 79.7 156 35.3
COL.COLO4_20252 Corchorus olitorius HOM05D000003 ORTHO05D007254 1.2e-12 78.2 249 26.1
Atru.chr4.2367 Acer truncatum HOM05D000003 ORTHO05D000167 2.6e-12 77.0 338 24.3
CANSAT35G0498 Cannabis sativa HOM05D000003 ORTHO05D000004 7.6e-12 75.5 300 24.3
Rhsim03G0017000 Rhododendron simsii HOM05D008183 ORTHO05D007254 7.6e-12 75.5 120 37.5
CSS0037115 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.0e-11 75.1 149 30.2
Rhsim07G0162700 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.0e-11 75.1 72 44.4
CANSAT25G3483 Cannabis sativa HOM05D000003 ORTHO05D000167 2.2e-11 73.9 316 25.6
CANSAT01G2388 Cannabis sativa HOM05D000003 ORTHO05D000004 3.8e-11 73.2 196 29.6
Rhsim02G0165900 Rhododendron simsii HOM05D000003 ORTHO05D000004 6.5e-11 72.4 134 31.3
RhsimUnG0236900 Rhododendron simsii HOM05D000003 ORTHO05D000004 8.5e-11 72.0 76 42.1
vmacro19083 Vaccinium macrocarpon HOM05D000458 ORTHO05D000951 1.1e-10 71.6 139 36.0
Lj3P1014T21 Lonicera japonica HOM05D008183 ORTHO05D007254 2.5e-10 70.5 126 33.3
Manes.06G094851 Manihot esculenta HOM05D000003 ORTHO05D000004 2.5e-10 70.5 299 24.7
Atru.chr2.2758 Acer truncatum HOM05D000003 ORTHO05D000167 3.2e-10 70.1 302 24.2
Rhsim02G0110700 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.2e-10 70.1 71 43.7
Lj4g0004660 Lotus japonicus HOM05D000003 ORTHO05D000004 9.3e-10 68.6 165 26.1
FvH4_2g06831 Fragaria vesca HOM05D011824 ORTHO05D035622 1.6e-09 67.8 161 31.1
FvH4_3g28461 Fragaria vesca HOM05D000003 ORTHO05D014631 1.6e-09 67.8 304 24.3
CSS0041363 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D002318 4.6e-09 66.2 112 35.7
FAN01G1363 Fragaria x ananassa HOM05D011624 ORTHO05D014221 4.6e-09 66.2 270 22.6
Lj2C65T12 Lonicera japonica HOM05D008183 ORTHO05D007254 6.1e-09 65.9 140 28.6
QL06p005642 Quercus lobata HOM05D000003 ORTHO05D000004 6.1e-09 65.9 325 23.7
Rhsim10G0186800 Rhododendron simsii HOM05D000973 ORTHO05D000652 6.1e-09 65.9 71 42.3
Atru.chr9.146 Acer truncatum HOM05D000003 ORTHO05D000167 1.0e-08 65.1 168 30.4
Lj2C40G9 Lonicera japonica HOM05D008183 ORTHO05D007254 1.0e-08 65.1 141 30.5
Atru.chr13.1617 Acer truncatum HOM05D000003 ORTHO05D000004 3.0e-08 63.5 67 41.8
Atru.chr11.694 Acer truncatum HOM05D000003 ORTHO05D000004 3.9e-08 63.2 181 26.5
FvH4_5g35622 Fragaria vesca HOM05D000003 ORTHO05D014221 3.9e-08 63.2 197 24.9
Atru.chr3.1567 Acer truncatum HOM05D000003 ORTHO05D000004 5.1e-08 62.8 66 42.4
Atru.chr3.1587 Acer truncatum HOM05D000003 ORTHO05D000004 5.1e-08 62.8 66 42.4
Atru.chr9.1010 Acer truncatum HOM05D000003 ORTHO05D000167 8.7e-08 62.0 174 31.6
Rhsim03G0157700 Rhododendron simsii HOM05D000003 ORTHO05D000004 8.7e-08 62.0 74 33.8
CSS0049610 Camellia sinensis var. sinensis HOM05D021266 ORTHO05D007254 1.1e-07 61.6 76 39.5
RcHm_v2.0_Chr1g0367181 Rosa chinensis HOM05D017965 ORTHO05D009449 1.1e-07 61.6 164 31.1
Atru.chr9.494 Acer truncatum HOM05D000003 ORTHO05D000006 1.5e-07 61.2 55 47.3
Rhsim13G0172400 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.5e-07 61.2 71 40.8
Rhsim01G0148400 Rhododendron simsii HOM05D001793 ORTHO05D001938 2.5e-07 60.5 78 33.3
Atru.chr12.2439 Acer truncatum HOM05D000003 ORTHO05D000004 3.3e-07 60.1 67 40.3
Atru.chr12.998 Acer truncatum HOM05D000003 ORTHO05D000167 3.3e-07 60.1 165 30.9
CANSAT54G2688 Cannabis sativa HOM05D000003 ORTHO05D000004 3.3e-07 60.1 241 26.1
Atru.chr5.2472 Acer truncatum HOM05D000003 ORTHO05D000004 4.3e-07 59.7 137 31.4
Lj3P354T13 Lonicera japonica HOM05D008183 ORTHO05D007254 4.3e-07 59.7 73 38.4
Nn1g09365 Nelumbo nucifera HOM05D000003 ORTHO05D000004 4.3e-07 59.7 64 37.5
Rhsim04G0211900 Rhododendron simsii HOM05D000003 ORTHO05D000004 4.3e-07 59.7 71 39.4
Atru.chr4.50 Acer truncatum HOM05D000003 ORTHO05D000004 5.7e-07 59.3 65 40.0
Atru.chr8.899 Acer truncatum HOM05D000003 ORTHO05D000004 5.7e-07 59.3 302 23.2
BolC3t20332H Brassica oleracea HOM05D001350 ORTHO05D001091 5.7e-07 59.3 69 39.1
PSO017G4097 Papaver somniferum HOM05D000003 ORTHO05D000004 5.7e-07 59.3 314 22.3
Atru.chr5.2450 Acer truncatum HOM05D000003 ORTHO05D000004 7.4e-07 58.9 396 21.5
Atru.chr8.1381 Acer truncatum HOM05D000003 ORTHO05D000004 7.4e-07 58.9 142 28.2
CANSAT35G1604 Cannabis sativa HOM05D000003 ORTHO05D000004 9.7e-07 58.5 69 39.1
FvH4_5g04240 Fragaria vesca HOM05D000003 ORTHO05D000004 9.7e-07 58.5 61 37.7
Lj7C520T4 Lonicera japonica HOM05D000003 ORTHO05D000004 9.7e-07 58.5 74 39.2
Lj5g0008185 Lotus japonicus HOM05D000003 ORTHO05D007254 9.7e-07 58.5 157 28.7
Nn4g22089 Nelumbo nucifera HOM05D000003 ORTHO05D000004 9.7e-07 58.5 64 37.5
Atru.chr6.788 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-06 58.2 71 38.0
RcHm_v2.0_Chr7g0223051 Rosa chinensis HOM05D000003 ORTHO05D009449 1.3e-06 58.2 159 27.0
Atru.chr10.669 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-06 57.8 72 37.5
vmacro05982 Vaccinium macrocarpon HOM05D002315 ORTHO05D002416 1.6e-06 57.8 114 33.3
Atru.chr3.2934 Acer truncatum HOM05D000003 ORTHO05D000006 2.2e-06 57.4 67 40.3
FvH4_5g21911 Fragaria vesca HOM05D000003 ORTHO05D000022 2.2e-06 57.4 288 23.6
vmacro00928 Vaccinium macrocarpon HOM05D000042 ORTHO05D008481 2.2e-06 57.4 71 40.8
Lj2g0023892 Lotus japonicus HOM05D000003 ORTHO05D007254 2.8e-06 57.0 158 24.7
RcHm_v2.0_Chr5g0038961 Rosa chinensis HOM05D008833 ORTHO05D000167 2.8e-06 57.0 161 27.3
Atru.chr10.527 Acer truncatum HOM05D000003 ORTHO05D000004 3.7e-06 56.6 68 35.3
Atru.ctg24.6 Acer truncatum HOM05D000003 ORTHO05D000004 3.7e-06 56.6 69 37.7
TAR256G0001 Trochodendron aralioides HOM05D000003 ORTHO05D000004 3.7e-06 56.6 66 36.4
Atru.chr2.2049 Acer truncatum HOM05D000003 ORTHO05D000004 4.8e-06 56.2 157 29.3
Atru.chr8.838 Acer truncatum HOM05D000003 ORTHO05D000167 4.8e-06 56.2 157 27.4
Actinidia37616 Actinidia chinensis HOM05D000001 ORTHO05D006025 4.8e-06 56.2 89 27.0
CSS0040440 Camellia sinensis var. sinensis HOM05D021266 ORTHO05D007254 4.8e-06 56.2 92 37.0
CANSAT78G0208 Cannabis sativa HOM05D000003 ORTHO05D000004 4.8e-06 56.2 61 37.7
Cpa.g.sc902.1 Carica papaya HOM05D015597 ORTHO05D020338 4.8e-06 56.2 62 37.1
Rhsim05G0174000 Rhododendron simsii HOM05D000003 ORTHO05D000004 4.8e-06 56.2 72 33.3
Rhsim13G0061700 Rhododendron simsii HOM05D000003 ORTHO05D000004 4.8e-06 56.2 71 36.6
RhsimUnG0169300 Rhododendron simsii HOM05D000003 ORTHO05D000004 4.8e-06 56.2 62 40.3
Atru.chr13.1582 Acer truncatum HOM05D000003 ORTHO05D000004 6.3e-06 55.8 64 39.1
Actinidia31222 Actinidia chinensis HOM05D000003 ORTHO05D000006 6.3e-06 55.8 214 27.1
PSO170G2843 Papaver somniferum HOM05D000003 ORTHO05D001026 6.3e-06 55.8 149 28.2
Rhsim03G0007600 Rhododendron simsii HOM05D033359 ORTHO05D007254 6.3e-06 55.8 150 28.0
Atru.chr4.1218 Acer truncatum HOM05D000003 ORTHO05D000167 8.2e-06 55.5 167 30.5
COL.COLO4_05866 Corchorus olitorius HOM05D012148 ORTHO05D000004 8.2e-06 55.5 65 38.5
FvH4_5g27367 Fragaria vesca HOM05D000003 ORTHO05D000004 8.2e-06 55.5 209 24.9
Lj3P854T34 Lonicera japonica HOM05D008183 ORTHO05D007254 8.2e-06 55.5 116 33.6
Potri.004G015067 Populus trichocarpa HOM05D000003 ORTHO05D000004 8.2e-06 55.5 65 35.4


User provided reference genes

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