Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000612 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D013255 5.2e-50 200.7 97 100.0
CSS0009184 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D013255 3.1e-34 148.3 96 79.2
CSS0000086 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D013255 5.3e-34 147.5 96 79.2
CSS0037480 Camellia sinensis var. sinensis HOM05D011226 ORTHO05D014017 2.8e-27 125.2 90 73.3
CSS0025386 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 9.0e-26 120.2 60 95.0
Nn2g13307 Nelumbo nucifera HOM05D002560 ORTHO05D003782 2.6e-17 92.0 64 70.3
CSS0041781 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 3.4e-17 91.7 63 66.7
TAR369G0139 Trochodendron aralioides HOM05D002560 ORTHO05D003782 3.4e-17 91.7 63 69.8
TAR623G1646 Trochodendron aralioides HOM05D002560 ORTHO05D003782 1.3e-16 89.7 63 68.3
Lj3C943G3 Lonicera japonica HOM05D002560 ORTHO05D003782 3.8e-16 88.2 63 63.5
Actinidia11535 Actinidia chinensis HOM05D002560 ORTHO05D003782 8.4e-16 87.0 66 66.7
CAN.G1189.1 Capsicum annuum HOM05D002560 ORTHO05D003782 1.4e-15 86.3 63 63.5
ECA247G0799 Erigeron canadensis HOM05D002560 ORTHO05D003782 1.4e-15 86.3 63 63.5
Nitab4.5_0000047g0010 Nicotiana tabacum HOM05D002560 ORTHO05D003782 1.4e-15 86.3 63 63.5
Nitab4.5_0004394g0020 Nicotiana tabacum HOM05D002560 ORTHO05D003782 1.4e-15 86.3 63 63.5
Dinv35441 Davidia involucrata HOM05D002560 ORTHO05D003782 1.9e-15 85.9 63 63.5
Manes.08G174400 Manihot esculenta HOM05D002560 ORTHO05D003782 2.5e-15 85.5 63 68.3
Solyc09g014780.3 Solanum lycopersicum HOM05D002560 ORTHO05D003782 2.5e-15 85.5 63 61.9
Sopen09g007660 Solanum pennellii HOM05D002560 ORTHO05D003782 2.5e-15 85.5 63 61.9
Nn2g11069 Nelumbo nucifera HOM05D002560 ORTHO05D003782 3.2e-15 85.1 63 66.7
MBI15_g10510_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D003782 4.2e-15 84.7 65 66.2
SGA_v2.0_scaffold85G26659 Striga asiatica HOM05D002560 ORTHO05D003782 5.5e-15 84.3 63 65.1
Nitab4.5_0000355g0160 Nicotiana tabacum HOM05D002560 ORTHO05D003782 7.1e-15 84.0 63 61.9
Nitab4.5_0002009g0040 Nicotiana tabacum HOM05D002560 ORTHO05D003782 7.1e-15 84.0 63 61.9
SGA_v2.0_scaffold373G50169 Striga asiatica HOM05D002560 ORTHO05D003782 7.1e-15 84.0 63 65.1
Dinv25295 Davidia involucrata HOM05D002560 ORTHO05D003782 9.3e-15 83.6 63 61.9
Pp3c17_3950 Physcomitrium patens HOM05D002560 ORTHO05D003782 9.3e-15 83.6 65 61.5
HPP92_015583 Vanilla planifolia HOM05D002560 ORTHO05D003782 9.3e-15 83.6 63 65.1
Actinidia29053 Actinidia chinensis HOM05D002560 ORTHO05D003782 1.2e-14 83.2 63 66.7
ATR0681G310 Amborella trichopoda HOM05D002560 ORTHO05D003782 1.6e-14 82.8 63 63.5
Aqoxy4G02161 Aquilegia oxysepala HOM05D002560 ORTHO05D003782 1.6e-14 82.8 49 77.6
Manes.09G114600 Manihot esculenta HOM05D002560 ORTHO05D003782 1.6e-14 82.8 63 65.1
Peaxi162Scf00595g00112 Petunia axillaris HOM05D002560 ORTHO05D003782 1.6e-14 82.8 65 56.9
Rhsim04G0123300 Rhododendron simsii HOM05D002560 ORTHO05D003782 1.6e-14 82.8 63 63.5
Rhsim05G0228200 Rhododendron simsii HOM05D002560 ORTHO05D003782 1.6e-14 82.8 63 60.3
PGSC0003DMG400017035 Solanum tuberosum HOM05D002560 ORTHO05D003782 1.6e-14 82.8 63 61.9
MSTRG.18962 Avicennia marina HOM05D002560 ORTHO05D003782 2.1e-14 82.4 63 61.9
HanXRQChr15g0463501 Helianthus annuus HOM05D002560 ORTHO05D003782 2.1e-14 82.4 63 60.3
Sabra06G0083000 Salix brachista HOM05D002560 ORTHO05D003782 2.7e-14 82.0 58 67.2
Hma1.2p1_0174F.1_g077050 Hydrangea macrophylla HOM05D002560 ORTHO05D003782 3.5e-14 81.6 63 58.7
CAN.G84.41 Capsicum annuum HOM05D002560 ORTHO05D000293 4.6e-14 81.3 70 60.0
Thhalv10012449m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 4.6e-14 81.3 63 61.9
HanXRQChr10g0288601 Helianthus annuus HOM05D002560 ORTHO05D003782 4.6e-14 81.3 63 60.3
Potri.006G106600 Populus trichocarpa HOM05D002560 ORTHO05D003782 4.6e-14 81.3 63 63.5
GSVIVG01030232001 Vitis vinifera HOM05D002560 ORTHO05D003782 7.9e-14 80.5 63 63.5
Lalb_Chr19g0124111 Lupinus albus HOM05D002560 ORTHO05D003782 1.0e-13 80.1 63 63.5
FvH4_6g10400 Fragaria vesca HOM05D002560 ORTHO05D003782 1.3e-13 79.7 51 70.6
FAN14G2820 Fragaria x ananassa HOM05D002560 ORTHO05D003782 1.3e-13 79.7 51 70.6
Glyma.09G278500 Glycine max HOM05D002560 ORTHO05D003782 1.3e-13 79.7 63 63.5
Glyma.18G210300 Glycine max HOM05D002560 ORTHO05D003782 1.3e-13 79.7 63 63.5
Peaxi162Scf00744g00021 Petunia axillaris HOM05D002560 ORTHO05D003782 1.3e-13 79.7 62 61.3
Phvul.008G087800 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 1.3e-13 79.7 63 63.5
Solyc10g076260.2 Solanum lycopersicum HOM05D002560 ORTHO05D003782 1.3e-13 79.7 62 61.3
vmacro08922 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 1.3e-13 79.7 63 63.5
VMungo1383G2495 Vigna mungo HOM05D002560 ORTHO05D003782 1.3e-13 79.7 63 63.5
Actinidia20781 Actinidia chinensis HOM05D002560 ORTHO05D003782 1.8e-13 79.3 63 63.5
DCAR_023988 Daucus carota HOM05D002560 ORTHO05D003782 1.8e-13 79.3 49 73.5
Migut.J00073 Erythranthe guttata HOM05D002560 ORTHO05D003782 1.8e-13 79.3 54 70.4
Gohir.D02G005900 Gossypium hirsutum HOM05D002560 ORTHO05D003782 1.8e-13 79.3 63 60.3
Gorai.005G006600 Gossypium raimondii HOM05D002560 ORTHO05D003782 1.8e-13 79.3 63 60.3
Lsat_1_v5_gn_7_100020 Lactuca sativa HOM05D002560 ORTHO05D013255 1.8e-13 79.3 97 46.4
arahy.Tifrunner.gnm1.ann1.7K02KP Arachis hypogaea HOM05D002560 ORTHO05D003782 2.3e-13 79.0 63 61.9
arahy.Tifrunner.gnm1.ann1.IZK0HU Arachis hypogaea HOM05D002560 ORTHO05D003782 2.3e-13 79.0 63 63.5
arahy.Tifrunner.gnm1.ann1.PPI0JG Arachis hypogaea HOM05D002560 ORTHO05D003782 2.3e-13 79.0 63 61.9
Duzib268G0573 Durio zibethinus HOM05D002560 ORTHO05D003782 2.3e-13 79.0 63 60.3
PSO017G3901 Papaver somniferum HOM05D002560 ORTHO05D003782 2.3e-13 79.0 66 63.6
THA.LOC104816173 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 2.3e-13 79.0 62 66.1
arahy.Tifrunner.gnm1.ann1.TV2NT7 Arachis hypogaea HOM05D002560 ORTHO05D003782 3.0e-13 78.6 62 62.9
Duzib151G0314 Durio zibethinus HOM05D002560 ORTHO05D003782 3.0e-13 78.6 63 60.3
Duzib212G0261 Durio zibethinus HOM05D002560 ORTHO05D003782 3.0e-13 78.6 63 60.3
MD12G1183600 Malus domestica HOM05D002560 ORTHO05D003782 3.0e-13 78.6 49 73.5
PSO170G0779 Papaver somniferum HOM05D002560 ORTHO05D003782 3.0e-13 78.6 66 62.1
THA.LOC104827066 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 3.0e-13 78.6 63 61.9
arahy.Tifrunner.gnm1.ann1.6VEX49 Arachis hypogaea HOM05D002560 ORTHO05D003782 3.9e-13 78.2 58 65.5
Lalb_Chr01g0023601 Lupinus albus HOM05D002560 ORTHO05D003782 3.9e-13 78.2 62 62.9
TWI77G0423 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 3.9e-13 78.2 63 60.3
Zm00001eb404940 Zea mays HOM05D002560 ORTHO05D003782 3.9e-13 78.2 65 60.0
Gohir.A02G005400 Gossypium hirsutum HOM05D002560 ORTHO05D003782 5.1e-13 77.8 63 57.1
Mapoly0002s0262 Marchantia polymorpha HOM05D002560 ORTHO05D003782 5.1e-13 77.8 53 69.8
Os11g0109933 Oryza sativa ssp. japonica HOM05D002560 ORTHO05D003782 5.1e-13 77.8 49 71.4
Os12g0110000 Oryza sativa ssp. japonica HOM05D002560 ORTHO05D003782 5.1e-13 77.8 49 71.4
THA.LOC104823313 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 5.1e-13 77.8 63 61.9
CDE12G0125 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 6.7e-13 77.4 50 74.0
DCAR_015351 Daucus carota HOM05D002560 ORTHO05D003782 6.7e-13 77.4 64 56.2
FAN02G0292 Fragaria x ananassa HOM05D002560 ORTHO05D003782 6.7e-13 77.4 51 68.6
FAN05G0561 Fragaria x ananassa HOM05D002560 ORTHO05D003782 6.7e-13 77.4 51 68.6
FAN05G5301 Fragaria x ananassa HOM05D002560 ORTHO05D003782 6.7e-13 77.4 51 68.6
FAN09G2734 Fragaria x ananassa HOM05D002560 ORTHO05D003782 6.7e-13 77.4 51 68.6
Potri.016G132000 Populus trichocarpa HOM05D002560 ORTHO05D003782 6.7e-13 77.4 63 60.3
AagrBONN_evm.TU.Sc2ySwM_228.3097 Anthoceros agrestis HOM05D002560 ORTHO05D003782 8.7e-13 77.0 50 68.0
Pp3c9_4770 Physcomitrium patens HOM05D002560 ORTHO05D003782 8.7e-13 77.0 51 68.6
Prupe.6G288100 Prunus persica HOM05D002560 ORTHO05D003782 8.7e-13 77.0 46 76.1
Sabra04G0150100 Salix brachista HOM05D002560 ORTHO05D003782 8.7e-13 77.0 63 60.3
Aa31LG1G23430 Aethionema arabicum HOM05D002560 ORTHO05D003782 1.1e-12 76.6 63 58.7
Psat3g122440 Pisum sativum HOM05D002560 ORTHO05D003782 1.1e-12 76.6 58 62.1
Thecc.04G156800 Theobroma cacao HOM05D002560 ORTHO05D003782 1.1e-12 76.6 58 62.1
vmacro20346 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 1.1e-12 76.6 60 61.7
AL3G19840 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 1.5e-12 76.3 63 58.7
MSTRG.5523 Avicennia marina HOM05D002560 ORTHO05D003782 1.5e-12 76.3 63 60.3
Cfa017080 Carpinus fangiana HOM05D002560 ORTHO05D003782 1.5e-12 76.3 46 73.9
Cc06_g00590 Coffea canephora HOM05D002560 ORTHO05D003782 1.5e-12 76.3 49 73.5
Haze_21118 Corylus avellana HOM05D002560 ORTHO05D003782 1.5e-12 76.3 46 73.9
Haze_21119 Corylus avellana HOM05D002560 ORTHO05D003782 1.5e-12 76.3 46 73.9
Gohir.A06G201901 Gossypium hirsutum HOM05D002560 ORTHO05D003782 1.5e-12 76.3 59 62.7
MD04G1169600 Malus domestica HOM05D002560 ORTHO05D003782 1.5e-12 76.3 52 71.2
Medtr7g072330 Medicago truncatula HOM05D002560 ORTHO05D003782 1.5e-12 76.3 58 62.1
RcHm_v2.0_Chr3g0461291 Rosa chinensis HOM05D002560 ORTHO05D003782 1.5e-12 76.3 49 69.4
SEGI_27011 Sequoiadendron giganteum HOM05D002560 ORTHO05D003782 1.5e-12 76.3 65 56.9
Aa31LG5G18820 Aethionema arabicum HOM05D002560 ORTHO05D003782 1.9e-12 75.9 63 58.7
AT3G08850 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 1.9e-12 75.9 63 58.7
Carub.0003s0796 Capsella rubella HOM05D002560 ORTHO05D003782 1.9e-12 75.9 63 58.7
CiPaw.09G217200 Carya illinoinensis HOM05D002560 ORTHO05D003782 1.9e-12 75.9 46 73.9
Thhalv10019904m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 1.9e-12 75.9 63 58.7
Gohir.A10G147600 Gossypium hirsutum HOM05D002560 ORTHO05D003782 1.9e-12 75.9 51 72.5
Gohir.D10G118500 Gossypium hirsutum HOM05D002560 ORTHO05D003782 1.9e-12 75.9 51 72.5
Gorai.011G130300 Gossypium raimondii HOM05D002560 ORTHO05D003782 1.9e-12 75.9 51 72.5
PGR004G0247 Punica granatum HOM05D002560 ORTHO05D003782 1.9e-12 75.9 49 69.4
Sp3g07250 Schrenkiella parvula HOM05D002560 ORTHO05D003782 1.9e-12 75.9 63 58.7
Sp6g41030 Schrenkiella parvula HOM05D002560 ORTHO05D003782 1.9e-12 75.9 62 61.3
TWI53G1929 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 1.9e-12 75.9 63 57.1
EL10Ac7g17038 Beta vulgaris HOM05D002560 ORTHO05D003782 2.5e-12 75.5 46 73.9
CANSAT35G0319 Cannabis sativa HOM05D002560 ORTHO05D003782 2.5e-12 75.5 46 73.9
AUR62026368 Chenopodium quinoa HOM05D002560 ORTHO05D003782 2.5e-12 75.5 46 73.9
Lsat_1_v5_gn_9_38100 Lactuca sativa HOM05D002560 ORTHO05D003782 2.5e-12 75.5 49 69.4
Lj2C63G9 Lonicera japonica HOM05D002560 ORTHO05D003782 2.5e-12 75.5 62 59.7
AT5G01770 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 3.3e-12 75.1 63 58.7
Ca_07738_v3 Cicer arietinum L. HOM05D002560 ORTHO05D003782 3.3e-12 75.1 63 57.1
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 3.3e-12 75.1 63 55.6
Lj1g0007869 Lotus japonicus HOM05D002560 ORTHO05D003782 3.3e-12 75.1 63 57.1
Sc20g0006790 Simmondsia chinensis HOM05D002560 ORTHO05D003782 3.3e-12 75.1 46 76.1
AL6G10260 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 4.3e-12 74.7 63 60.3
BcaB04g18570 Brassica carinata HOM05D002560 ORTHO05D003782 4.3e-12 74.7 63 57.1
BcaC01g04199 Brassica carinata HOM05D002560 ORTHO05D003782 4.3e-12 74.7 63 57.1
BcaC05g29622 Brassica carinata HOM05D002560 ORTHO05D003782 4.3e-12 74.7 63 57.1
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 4.3e-12 74.7 63 57.1
A05p39970 Brassica napus HOM05D002560 ORTHO05D003782 4.3e-12 74.7 63 57.1
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 4.3e-12 74.7 63 57.1
C05p59010 Brassica napus HOM05D002560 ORTHO05D003782 4.3e-12 74.7 63 57.1
BolC3t16666H Brassica oleracea HOM05D002560 ORTHO05D003782 4.3e-12 74.7 63 57.1
BolC5t34554H Brassica oleracea HOM05D002560 ORTHO05D003782 4.3e-12 74.7 63 57.1
BraA03t12804Z Brassica rapa HOM05D002560 ORTHO05D003782 4.3e-12 74.7 63 57.1
CiPaw.10G163200 Carya illinoinensis HOM05D002560 ORTHO05D003782 4.3e-12 74.7 46 71.7
Phvul.008G088100 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 4.3e-12 74.7 62 61.3
QL07p033277 Quercus lobata HOM05D002560 ORTHO05D003782 4.3e-12 74.7 46 71.7
SMO116G0458 Selaginella moellendorffii HOM05D002560 ORTHO05D003782 4.3e-12 74.7 48 70.8
Hund19809 Selenicereus undatus HOM05D002560 ORTHO05D003782 4.3e-12 74.7 45 73.3
Sc02g0000740 Simmondsia chinensis HOM05D002560 ORTHO05D003782 4.3e-12 74.7 46 71.7
TPR.G35288 Trifolium pratense HOM05D002560 ORTHO05D003782 4.3e-12 74.7 58 62.1
TPR.G35291 Trifolium pratense HOM05D002560 ORTHO05D003782 4.3e-12 74.7 58 60.3
Ah.08g209810 Amaranthus hybridus HOM05D002560 ORTHO05D003782 5.7e-12 74.3 45 75.6
CDE04G1751 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 5.7e-12 74.3 50 70.0
Gohir.A05G397550 Gossypium hirsutum HOM05D002560 ORTHO05D003782 5.7e-12 74.3 73 50.7
Ah.15g090290 Amaranthus hybridus HOM05D002560 ORTHO05D003782 7.4e-12 73.9 45 73.3
ClCG04G006550 Citrullus lanatus HOM05D002560 ORTHO05D003782 7.4e-12 73.9 45 73.3
CsaV3_4G026950 Cucumis sativus L. HOM05D002560 ORTHO05D003782 7.4e-12 73.9 45 73.3
Pp3c15_3360 Physcomitrium patens HOM05D002560 ORTHO05D003782 7.4e-12 73.9 69 56.5
Pp3c25_7220 Physcomitrium patens HOM05D002560 ORTHO05D003782 7.4e-12 73.9 65 55.4
Hund03758 Selenicereus undatus HOM05D002560 ORTHO05D003782 7.4e-12 73.9 46 71.7
Atru.chr8.2364 Acer truncatum HOM05D002560 ORTHO05D003782 9.7e-12 73.6 63 57.1
AUR62006388 Chenopodium quinoa HOM05D002560 ORTHO05D003782 9.7e-12 73.6 45 73.3
Sed0022812 Sechium edule HOM05D002560 ORTHO05D003782 9.7e-12 73.6 50 70.0
CBR_g54867 Chara braunii HOM05D002560 ORTHO05D003782 1.3e-11 73.2 50 68.0
Zm00001eb093980 Zea mays HOM05D002560 ORTHO05D003782 1.3e-11 73.2 49 69.4
Ciclev10010918m.g Citrus clementina HOM05D002560 ORTHO05D003782 1.6e-11 72.8 63 57.1
CARHR083160 Cardamine hirsuta HOM05D002560 ORTHO05D003782 2.8e-11 72.0 46 69.6
Lsat_1_v5_gn_2_30201 Lactuca sativa HOM05D002560 ORTHO05D013255 2.8e-11 72.0 81 48.1
Eucgr.K01257 Eucalyptus grandis HOM05D002560 ORTHO05D003782 3.7e-11 71.6 46 67.4
unitig_27.g24878 Utricularia gibba HOM05D002560 ORTHO05D003782 4.8e-11 71.2 46 71.7
AUR62029728 Chenopodium quinoa HOM05D002560 ORTHO05D003782 2.4e-10 68.9 43 72.1
SMO334G0080 Selaginella moellendorffii HOM05D002560 ORTHO05D003782 7.6e-09 63.9 47 61.7
PRCOL_00002325 Prasinoderma coloniale HOM05D002560 ORTHO05D003782 1.3e-08 63.2 63 52.4
MCO07G246 Micromonas commoda HOM05D002560 ORTHO05D003782 5.0e-08 61.2 65 55.4
CSS0020454 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 8.5e-08 60.5 55 54.5
Cre08.g371957 Chlamydomonas reinhardtii HOM05D002560 ORTHO05D003782 3.2e-07 58.5 48 58.3
Lsat_1_v5_gn_7_54181 Lactuca sativa HOM05D002560 ORTHO05D003085 5.5e-07 57.8 51 58.8
Haze_26280 Corylus avellana HOM05D002560 ORTHO05D003782 9.3e-07 57.0 43 53.5
Cfa024140 Carpinus fangiana HOM05D002560 ORTHO05D003782 2.7e-06 55.5 49 49.0


User provided reference genes

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